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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376700 |
| Transcript ID | LotjaGi3g1v0376700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COP9 signalosome complex subunit 1; TAIR: AT3G61140.1 COP9 signalosome complex subunit 1; Swiss-Prot: sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1; TrEMBL-Plants: tr|I1JKE3|I1JKE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0376700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76926989..76931373) extracted from Lotus japonicus Gifu genome v1.2.
GAGTACTAGTTTTAAGTGTTAACACACTAATTTTGGATAGCACCGAAATTTTTCAAAGAGTGAAGTGAGTCTCGGTGCAC AGTCACACTAGAAGCAAACCCTGTTCGCTCAGAAAACACAAAACCCTAATCCCAAATTCTCGTCGACATGGACGGTGACG ACGAGACATCGGGCCCGATGATCGACGAGATCTACGCCAACGGCGGCGACGACAGCGACAACCGGAGCCGGCGAGCGATC ATGAGCGGCGACCAGCTCGACATCGAGGCGTACGCAGGGCTTTACTCGGGGCGCACGAAGATCATGCGGCTTCTCTTCAT CGCCGATGCCAACAAGAACCCCACGGTGCAGCTTGAGGCGCTTCGCATGGCCTATGATGAGATTAAGAAGGGTGAGAACA CCCATCTCTTCAGGGAAGTCGTGAAGAAGATCGATGGCAAGTTGGGACCTAACTACAACATGGATTCGGCTTGGTGCGAT GCGTTTGATCGTAGGGCTGAGCAGAAGAGGGAGAAGCTTGAAAACGAACTCAATGCATATAGGGTATTGTTCTCCTATCA CTTTTTTTTTGTTAATTTTTGTTTTTGGTATAATCAAGGGAAAAGAACACTTTGAAATAGTAATTGTATGATATGATAAT GGTAGTTTGGTAGCTAATAGAGTCACTCACTGTAATTAGATGATAGTTAACTGATTAGGTTTTTATCTTGTGATTAGTTA CACTTAGTTTCGAAGTTTAGGGTTCAGTTGTGATATCCAGTTAGTGGTTAGCTGCTGAGTAAGCATGTCAGTTGTAGGTG ATACATGAACAAAACTTGTATAAATTGTTTTGAGTAAAGTTTCATTTACACTTGTTATAAAGTGGAAATTAAGTAGAGAG AAGAGAGAGATAGAAAATGAGAGATGTGATAGGTGATATGATTGTAAAAGAAGAGAGATAGATAGAAAGTGAAGTGGAGG TGTGAATGAATCATAGCTCAATTGTTTTACTGATTGTTAGTAGCTATGTTGAACATGAATTTGAGTCAAAATATACAATT AAATACAATGATTCATTTTAATTTATAATCTTTAATATTAATTATACACTATTTTTCTGTCATGTGTCATTTTGGATCTG TATTTTCTGAAAATTTCCTTTTTGCTATTCGTGCAATGCTTTCTTATTTAGTTTAGACTTTGATTATAAGTCAAACCGAT TTTTGATGAGTCATGATATGGGTAATGTTTGTGAAGAGTCACTTTTTCTTTCCTTTTCTTTTTTATTGTGGGGGTTGATA CTTGTTTATTTATTCGACCTCTTGGGTGGGTTCAGAGCATTTCATGCTTGTATTGCTATTGGATAGATTTTGTTATCTGT CTGTAATTTTTTTTCTGTTGTTGCTTCTGCTTTCTAATATTGTATTTTATTGAATTGTGTACTTACCAGCAACCTTGTGA GCTTTGCTGTATGTTTAAGTTGTATTTTGTATGTAAGCATCAGTGCTTCACTTTAGCGTTGCTTTTTTATGCAAAATGGC GGTTAGTAATGGGTCATGTATGTAGCTTGAAAGATAAAGAGTTGGTTTTGTGTTGGTGCAATGAAAAAGTTCTGCAGATA GTTATGTTTACCGTGTTATGTGAAGTGTGAATTTATGAGGGTAGATGGTAGTTGCTTGCAATTGTGTTCTGTCAGACTGG AAATTATGCATCATCTTATAATTTTCATTGTGTTGGTGCTCGGATGAAATGTATCAATCATGCGAGATTGAATTTTCATG TTGTTTCCATTTGACATGGTTGAGAATTAGAGAGTAGTGTCCTGTCCGAGACTCCCTGTGGAGCTTTACCTTATATCTAG GTGTTAGTCACACCAAGTGCTTCTTTCCATAATTGGCATGGTGAAGAAGCTAGATGGATAGGTTTTGTGAATTGCCCTAA CAAAAATAAGAATAAAAATATGAAGTTACGTGGATAGGTTTTGTGATTTGTTTCTGTTTACTGGGACTGCTTCCTCGTTT ACGATATTTTAGTACGGCTGGTTTTTCCTTTTTTAACCAGCTTACTTTAATCACTATTTGCTGTTTTCTCTCATCTCTCA TTCAGATTCCTCTTACCTTTTACAGACGAACCTGATTAAAGAAAGCATAAGAATGGGATACAATGATTTAGGAGACTTTT ACTATGCCCATGGTCAATTAGGGGATGCTTTTAAAAGTTATGTCCGTACCCGGGATTATTGCACTACATCAAAGCACATC ATCCATATGTGTATGAGTGCAATTTTGGTCAGCATTGAGATGGGTCAATTTTCTCATGTCTCAAGCTATGTTAGCAAGGC AGAACAGACACCTGAGGGCCTTGACCCAATAACAGTTTCCAAGCTACGATGTGCTGCAGGCTTAGCAAATCTGGAGGCCA AAAAGTATAAGCTTGCTGCTCGAAAGGTTTGCTCCTTTTCTCTCTCTTTCACTCCAACTCTGCTCAGAATAAGGTTAAGA CCAGTTCACTCTAAGATAACTCCATGATCTATCAAATCCCTGATTTTTAGTATAGGATTCAATATTCATTTATCATTGTT TGATGTATGATAACCTATTCACTTGATTGCTTTTAACTTTGGCAACCTCATTTTCAATATTTAATGCAGTTTCTAGAAAC AGGCCCAGAACTGGTTAATCACTACAATGAAGTAATTGCACCTCAAGATGTTGCAACATATGGGGGACTTTGTGCACTTG CAACATTTGATCGGGCAGAGTTGAAGGCAAGTTCTCCATTATATTATTATGATGATTTTTTGTCTAAATGAATATTCATT TATACATTGTCTTCATTGTTTTATTTTTTATATTTGGCAGGCGAAAGTTATTGACAATTCCAACTTTCGGAATTTCTTAG AGTTAGTACCTGAAGTAAGGGAACTGGTAAATGATTTTTACTCGAGGTAAGTTGGTGCAAATAAGCTCTTTTGTTCACTT ATGCACCATATTAGAAAGAATGTAAATAAGGTAATTGTATATTATCAGAATTTAAAAGAATTGGATTGGAATGTTTGCAG TCATGGATTCATGAGACAGTTAAACTTGATTGATTTTTATGGGGTTGGTTATTCGTTGGCCTTTTGGTTTGTGCTCTGCA AATTAAAACATTTTTAATAGAATTTTCAATTTTATTGAATTGGCATAAGGCGACTTTTTAAGTCTTTAAATATTTATCTA ACTCAAACTGTTTAGTATCTTGGGCACCTTCTGCTTCTCTTTGTGCATGGCATGTTAACCAATCTCTTTCACTCATTTTT GCAGCCACTATGCTTCATGTCTGGAATACCTTGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCAT GTTGAGACACTTTATGATCAAATTCGTCACAAAGCTCTTATCCAGTATACACTCCCATTTGTGTCTGTTGATTTGAACAT GATGGCTGACGCATTCAAAACAACTGTTGTTGGACTTCAGAAAGAACTTGAAGCATTGATTACTGATAATCAGATACAGG TCTGTTTGGAGTTACTCTCTGTCTTGTTTTCCCTGTGCATATCTAATTTGGGCTGTATTCTCATTTTTCATTTACCTGTG GCCAAATAACTTCTGAATGTGATTTTAAAATTTTCAATGCTTCTTTTACGGTAAAAAGTTGCCTTTCTGGGACTTTAACA TGTTGTGGTTTATGGAACCTATTGGACATATGCAGGCTCGAATTGATTCACACAACAAAATTTTGTATGCACGGCATGCT GATCAGAGGAATGCTACCTTCCAAAGGGTTCTAGATACCGGAAGGGAATTTGATCGTGATGTTCGTTCCATGTTACTGAG AGCAAATCTTATCAAGCATGATCACAACCTTAGGGCATTAAGGAAACTTTGATTCTGTATTGAGATGATAATGGGACCAA GGTTGTTATTTTACTTTTTCACAGGCATTGGTCAACTATAAGGAAGAGAAAGTTAGAAGATTACCTTACCTTTGGTGGTT TGAAACAAGGCTGCAAACATTCATTTGTGCAAACATTTAACGACATATTATGGTAGCTTTTGTATATACTCTTTCATAGT TTCAGTTAATTCGTCTCCAGATCTTCATTTCCTTCGTTTGTGTTTGTTACTGTTATTCTATTAGATAAGACACCTTGTGC AACTTCATCGTGTAAAACATAGTTGAGTCTTTCTTAACTAGTATGACCTAACACTCTTGACCACCCTCTAAGCTGAATTG GTCCATGATGCAAAAAATTCACGGTCAATTCGCCTCAGTCCATAACCACCTTCCTCTAAGAAAAGCTTGATGACCACTCC GAGTGGATTAGTACTGTCTTTTATTTTGACCATGAATTTCTTCATTTTTAAGACTTGTCACTGTG
CDS sequence (LotjaGi3g1v0376700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGTGACGACGAGACATCGGGCCCGATGATCGACGAGATCTACGCCAACGGCGGCGACGACAGCGACAACCGGAG CCGGCGAGCGATCATGAGCGGCGACCAGCTCGACATCGAGGCGTACGCAGGGCTTTACTCGGGGCGCACGAAGATCATGC GGCTTCTCTTCATCGCCGATGCCAACAAGAACCCCACGGTGCAGCTTGAGGCGCTTCGCATGGCCTATGATGAGATTAAG AAGGGTGAGAACACCCATCTCTTCAGGGAAGTCGTGAAGAAGATCGATGGCAAGTTGGGACCTAACTACAACATGGATTC GGCTTGGTGCGATGCGTTTGATCGTAGGGCTGAGCAGAAGAGGGAGAAGCTTGAAAACGAACTCAATGCATATAGGACGA ACCTGATTAAAGAAAGCATAAGAATGGGATACAATGATTTAGGAGACTTTTACTATGCCCATGGTCAATTAGGGGATGCT TTTAAAAGTTATGTCCGTACCCGGGATTATTGCACTACATCAAAGCACATCATCCATATGTGTATGAGTGCAATTTTGGT CAGCATTGAGATGGGTCAATTTTCTCATGTCTCAAGCTATGTTAGCAAGGCAGAACAGACACCTGAGGGCCTTGACCCAA TAACAGTTTCCAAGCTACGATGTGCTGCAGGCTTAGCAAATCTGGAGGCCAAAAAGTATAAGCTTGCTGCTCGAAAGTTT CTAGAAACAGGCCCAGAACTGGTTAATCACTACAATGAAGTAATTGCACCTCAAGATGTTGCAACATATGGGGGACTTTG TGCACTTGCAACATTTGATCGGGCAGAGTTGAAGGCGAAAGTTATTGACAATTCCAACTTTCGGAATTTCTTAGAGTTAG TACCTGAAGTAAGGGAACTGGTAAATGATTTTTACTCGAGCCACTATGCTTCATGTCTGGAATACCTTGGGAACCTCAAA GCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATTCGTCACAAAGCTCTTATCCA GTATACACTCCCATTTGTGTCTGTTGATTTGAACATGATGGCTGACGCATTCAAAACAACTGTTGTTGGACTTCAGAAAG AACTTGAAGCATTGATTACTGATAATCAGATACAGGCTCGAATTGATTCACACAACAAAATTTTGTATGCACGGCATGCT GATCAGAGGAATGCTACCTTCCAAAGGGTTCTAGATACCGGAAGGGAATTTGATCGTGATGTTCGTTCCATGTTACTGAG AGCAAATCTTATCAAGCATGATCACAACCTTAGGGCATTAAGGAAACTTTGA
Protein sequence (LotjaGi3g1v0376700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGDDETSGPMIDEIYANGGDDSDNRSRRAIMSGDQLDIEAYAGLYSGRTKIMRLLFIADANKNPTVQLEALRMAYDEIK KGENTHLFREVVKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDFYYAHGQLGDA FKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPEGLDPITVSKLRCAAGLANLEAKKYKLAARKF LETGPELVNHYNEVIAPQDVATYGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLK ANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDSHNKILYARHA DQRNATFQRVLDTGREFDRDVRSMLLRANLIKHDHNLRALRKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 17 | 440 | 424 | 2.3E-214 | – | |
| PANTHER | 17 | 440 | 424 | 2.3E-214 | – | |
| Gene3D | 35 | 351 | 317 | 4.4E-140 | – | |
| Pfam | 106 | 280 | 175 | 3.4E-53 | ||
| Coils | 110 | 141 | 32 | - | – | |
| ProSiteProfiles | 229 | 402 | 174 | 18.703 | ||
| Pfam | 296 | 397 | 102 | 4.0E-16 | ||
| SUPERFAMILY | 326 | 406 | 81 | 2.58E-11 | ||
| SMART | 331 | 414 | 84 | 1.0E-17 | – | |
| SMART | 331 | 414 | 84 | 1.0E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0376700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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