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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0386800 |
| Transcript ID | LotjaGi3g1v0386800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q6BUT3|NST1_DEBHA Stress response protein NST1; TrEMBL-Plants: tr|A0A151RE46|A0A151RE46_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi3g1v0386800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78248266..78250391) extracted from Lotus japonicus Gifu genome v1.2.
TTAGGAGATAAATTAGGAGGCAAATCAGGAGATGAATTAGGAGACAAATCAGGAAATAATGCTGGGGATACATGCATTTT ACCGTTATGATTTGACTTAGTGAGATAGCAAAGGATGTACGTACTGTGCTTGTACTACATCTGTACTACTAACATATTGT TAGCTTAGTAGTATAAAAAGGCTACACCTTCCCCTGTATTCTAATCAACATATTTTATCCCATTCAATTATATTCCAGAT ATATATTTTTCCTAGAATCTCTTTATGGTATCAAGAGCAAGAACAAAGTAATTTTTTTTTTCCGCTGCTGCTCCTACCTT CACCATGGCTACAGATGGAGATGCTGATCAGGGTGCTAAGAAGATTGATAGATCCAAGGAGGACCAGTCTCTAAATCCTA CAAGCCCCTATTATCTCCACCCAGGTGAGAATCCAGGAACAATTATTTCTGATCCACAACTTGTTGATACAAATTATCAT GCTTGGTCTACTAATGTCAAGAGAGCACTGGTGTCCAAAAACAAGTACAAATTTGTTGATGGTTCGATCACCGAGCCCAA GAATGATGATCCTCTACACGATGCATGGGAGAGGTGCAATAACATGGTGGTTGCCTGGATCATGAAGACAATCTCTAAAC CCATTGCTCAAAGTGTTGTCTACATTGATGATGCCAAGGAACTTTGGGAAGATTTGAAAGATCGATTCTCCAAAGGTGAT CATTTTCGAGTCTCTGATCTCTTACAGGACATTCATTCTATTCGCCAAGCAGATCGAAGCATGTCTTCTTACTATACTGA ACTCAAGACTCTTTGGGAGGAATTGGAAGCCCTTCGCCCCATTCCGTCTTGCAAGTGCTCGACAAAATGCTCATGTGAGT TAATGGCCGTTACCAAGAAATATAGGGACCAAGAGCATGTTATTTGTTTTCTCAAAGGATTAAACGAGCAATACATTCAT GTGAGGAGCCAAATCTTGATGATGGATGAATTGCCTTCTATCAAGAAAGCTTTCGCAATGATCCTCCAACAAGAAAGGCA ACAAGTTAATTCTGGTTCCACGGAATCTAGAATTCTGGCAGCAGAGGCCAACACTGCTAATGCTAGCAACAATTCTTGGA AAAATCCTGGGGGTAGAGGAAACAACTCATATGGGAATAATCATGGTGGTAGAGGAAGAGGCAGGTCCAATTGGAAAGGA GCTACAGCCATCAACAAGGCTTGTTGTTGCAGCTACTGTGGCAGAGAGGGACACACCATAGATAACTGCTACTTCAAGCA TGGTTTTCCTCCAAACTTCAAATTCAAAAACAAAACCACAAATTCGATTAACGCTGTTGTTGCTGATCAGGATTCACAAA ATCTGGATCATGTTACAAGTCAAAATCAGACACCAGATCCCATTCACAACTTGACACCCCAACAACAAGCTCAAGTTATA GAGTTGATCAACAAAAGTAGCAGTCGTGACTACAATCATTCAGTTCACCAGGTTTCACAAACACAGTCTCTATCTCATCA ACAAAAACCTGGTAATATTCCTAACCTTGGTCTTTGGATTATTGACAGTGGGGCTACTGACCATGTTACCAATTCTATCC ATCATTTTGTTTCCTATAGGTCTATAAAACCTATACAGGTTAAGCTCCCAAATGGTGCTGTTACCTTCTCATATTTTGCA GGGATTATCTCTTTTACAGATGATCTTTATCTGCAAAATGTCTTGTTTATTCCTGAATTTCAGTATAATATCATGTCTAT TAAAAAGATTACTAATGACTTGGATTGCACTATTACTTTCACTAAGAACTCTTGTATTATACAGGATACGATTTCCTCCA AGATGATTGGACAAGCTAAAGTTTCTCAGAGTCTCTACTTTCTTGAGGAACCTAAAAGAATCTGTGTTGCGGTCACTGAT TGGAATATCCAGAATAAGTTTGTTAACATTGCTGAAACAGTTCCTGGTAAAAATGGTAGTCACCCACAATTTGATATGTG GCATTTTAGACTCGAACACCCCTCCAGTAAGGTTTTACAACACATTAGTAAGGTTTTTCCTTATGTAAAACTTCATTCTA ATATCATTTGTGATTTTTGTCATATGGCAAAACAAACTAAGCTTCC
CDS sequence (LotjaGi3g1v0386800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACAGATGGAGATGCTGATCAGGGTGCTAAGAAGATTGATAGATCCAAGGAGGACCAGTCTCTAAATCCTACAAG CCCCTATTATCTCCACCCAGGTGAGAATCCAGGAACAATTATTTCTGATCCACAACTTGTTGATACAAATTATCATGCTT GGTCTACTAATGTCAAGAGAGCACTGGTGTCCAAAAACAAGTACAAATTTGTTGATGGTTCGATCACCGAGCCCAAGAAT GATGATCCTCTACACGATGCATGGGAGAGGTGCAATAACATGGTGGTTGCCTGGATCATGAAGACAATCTCTAAACCCAT TGCTCAAAGTGTTGTCTACATTGATGATGCCAAGGAACTTTGGGAAGATTTGAAAGATCGATTCTCCAAAGGTGATCATT TTCGAGTCTCTGATCTCTTACAGGACATTCATTCTATTCGCCAAGCAGATCGAAGCATGTCTTCTTACTATACTGAACTC AAGACTCTTTGGGAGGAATTGGAAGCCCTTCGCCCCATTCCGTCTTGCAAGTGCTCGACAAAATGCTCATGTGAGTTAAT GGCCGTTACCAAGAAATATAGGGACCAAGAGCATGTTATTTGTTTTCTCAAAGGATTAAACGAGCAATACATTCATGTGA GGAGCCAAATCTTGATGATGGATGAATTGCCTTCTATCAAGAAAGCTTTCGCAATGATCCTCCAACAAGAAAGGCAACAA GTTAATTCTGGTTCCACGGAATCTAGAATTCTGGCAGCAGAGGCCAACACTGCTAATGCTAGCAACAATTCTTGGAAAAA TCCTGGGGGTAGAGGAAACAACTCATATGGGAATAATCATGGTGGTAGAGGAAGAGGCAGGTCCAATTGGAAAGGAGCTA CAGCCATCAACAAGGCTTGTTGTTGCAGCTACTGTGGCAGAGAGGGACACACCATAGATAACTGCTACTTCAAGCATGGT TTTCCTCCAAACTTCAAATTCAAAAACAAAACCACAAATTCGATTAACGCTGTTGTTGCTGATCAGGATTCACAAAATCT GGATCATGTTACAAGTCAAAATCAGACACCAGATCCCATTCACAACTTGACACCCCAACAACAAGCTCAAGTTATAGAGT TGATCAACAAAAGTAGCAGTCGTGACTACAATCATTCAGTTCACCAGGTTTCACAAACACAGTCTCTATCTCATCAACAA AAACCTGGATACGATTTCCTCCAAGATGATTGGACAAGCTAA
Protein sequence (LotjaGi3g1v0386800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATDGDADQGAKKIDRSKEDQSLNPTSPYYLHPGENPGTIISDPQLVDTNYHAWSTNVKRALVSKNKYKFVDGSITEPKN DDPLHDAWERCNNMVVAWIMKTISKPIAQSVVYIDDAKELWEDLKDRFSKGDHFRVSDLLQDIHSIRQADRSMSSYYTEL KTLWEELEALRPIPSCKCSTKCSCELMAVTKKYRDQEHVICFLKGLNEQYIHVRSQILMMDELPSIKKAFAMILQQERQQ VNSGSTESRILAAEANTANASNNSWKNPGGRGNNSYGNNHGGRGRGRSNWKGATAINKACCCSYCGREGHTIDNCYFKHG FPPNFKFKNKTTNSINAVVADQDSQNLDHVTSQNQTPDPIHNLTPQQQAQVIELINKSSSRDYNHSVHQVSQTQSLSHQQ KPGYDFLQDDWTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| Pfam | 32 | 79 | 48 | 1.3E-12 | ||
| PANTHER | 62 | 369 | 308 | 2.9E-75 | – | |
| PANTHER | 62 | 369 | 308 | 2.9E-75 | – | |
| Pfam | 88 | 241 | 154 | 1.6E-13 | – | |
| MobiDBLite | 260 | 287 | 28 | - | – | |
| MobiDBLite | 260 | 282 | 23 | - | – | |
| MobiDBLite | 391 | 413 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0386800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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