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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0387800 |
| Transcript ID | LotjaGi3g1v0387800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G01270.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q09463|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr|K7MEZ9|K7MEZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0387800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78437951..78442823) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTCTCTATTTTTTTCTCGGGAAAGTGTGGTCAGAAAATCACACACAGCGAAATAGAGAGAGAAAGACACCGCAAGAA ATGGTAGATGGCGGCGAATTCGCCGGCACCATTTGCTCGATCTGCTACGAAGGTCTCAAACCCGTCACCGAAGATCTCCA ATCCATCTCCATCTGCGGCCATGTCTTCCACGAGCTCTGGTAAATCCCCTCCCACCCTCTTGCATTTTCAAGCGTCGATT GAAGAAAACGCCGCTACAGTTTCCTTCTCTGACCTTGTTTCTATCTGGGTGTGTGCAGCTTGCAGCAATGGTTCGAGTAC TGTTCGAAATCGAAGAAGCAAACCTGCCCTGTGTGCAAGCAGAGTTGCAAGGGCAACGACGCGTGCCGGCTTTATTTTCA GTCCGTTGGAGACGCGAGCGACGCTGTTCCCACTCAGAAGTGTGTTGATTTTGAGGAAGATGCTGGTGTTCTGCGAAGGG AAGTGAAGAGGTTCGAGGCCAAAGTTTCGGGGCTTAGTTCGGTTGTGGAACGCCAAAAAAAGGAGTTACAAGAACTTAAC GAAGAGGTATTTTCTACTTTTTTATGGTTTTTGGCTTTAGTTTTTGGGTCTTTTAGGTTAATTTGTTGGGTGAATGAAAT GATTCTTAGGTAGGGGGTGTGTAACAATCAGTTTAGTTAGAATTTGTACTGGAATGCTGTGCTGGTATTGATTTGTTGAT TGCTGAATATTTTGTTGATTGTTTGATTGAAATTTTATTTGGAAAGGGACTTGTTCTTTCTATTGTGTAATTCTCTTGGG TACTGCATGCTTTTCCTGAGTTGTTAAGCTTAAGAACAAATTAAAGAAACCTATGTATTTGTTGATTCCTGGGCATTTGG ATTAACAGAGGAAAGAGATAGGAAAGTGAAAGAAGCCAAACCTTGTTCCATGTGATTTTTTAAAACAAGATATATATATA TATATATATATATATATATATATATATCTTTACAATCAGATTATGTATGAGGTGTTACATCAATTTTCATATTTTAAATC CGAGTTAGGTAGTTACATGGTGTAAAATATATCTTGACAACAAACAGCCATGCTTTCAAATAATAGTGATCCGAATATGA AATTTGCTTTTATAGTTACTTATATATATTTTCATTTTTTCAATAATGCTGTTGATTTCTTATGGCTCTTAAATGGGTCT GTCTTCAGTTGTGTGTTTGCAAGGAGAAGGCAAAGATAGAATCAGCATTTAAGAATGAGGCTATAAGGCAAAAATCATCT ATACATTCCCAGCTTAATATCAAACTAGAGGTGAATTACTCTGTAACCTACTGTTGTATTTGTGATCAATTAAATATCTA CAACCTGAATTTGATGGTGCAATGGTGATGTAGGAGCTTAGCAAGTCAACTTCAGAATGCTCTAAATTACGGGACATAAA TATGGCTTTGGCTAAAGAAGTTGCAGCATTAAAATTGTGAGTTGAGCTGCATTTTTGATTTAGTATCCATATTTTGTTTA TGATATACCATTAATTGAATTTTTACTGCTTGCTAAGTTGGTTTATGGTCTGATCTGTACCTCAGAGTGGCTGATGTGGA CCTTGATGAAGATGAGATTTTGAAGCTTGCCACCTTAGGTAATGGGGCTAACAGTAAAGACACGATAGACACATTGAAAA GATCTCTTGTCCTGCGGAACAGGTTTATCCATTAAATCTTGATTTGTTCAATAAAAGCTAGGTTGAAGAGTTGTATTCAA CTTTCTAGAATTTCTGTATGGACTTGAAATCAGTAAATGTTATGTTTTCGGGCTTTAGCTTGTGGTACTCTTCTATGTAT GTGACTATACCGTTGGCACAAAATTCATGTTTAGCCCTTGTAATTGTGCCTGGCTGACTAAAACTTTTATGCCTATTTTG TCAGGAGTTACAAAGAATTAATGGCCAAGTGCAATGTTCTAGGAAGAGGTGAGGCTCGATATAGTAAAAAGCATGAGAAG GCTAAAGAGAAGATCATTAAATTGAAGGTAAGCACATGGTGTACTGTACTTGCTAGATGGTAATCTCATTAGAAGCAGTT TTTTATGGAGCGTTAAATATCAGTCTTTTGGACATTGCTAGGCTAGGGTACACGAACTGGAGAGAGCAGCTGAAGTAAAA GAGAATGAATATTTGATGTCTCTGAAAGTTTCAAAGAAAACCAAGTCTTCAAAGAAGGGTTATGAGAATAGCACCAATTC TGATTCTGATGTATTCACAGCTGGCAAATTTTCTTTAGATGAGCAGAGCAAACAAATTTCGACGCCCAAATCTGGAATTG ATCTGACTGCGAAGAGTGGCAGTAATTATTTACAATCTTTGAAGATACAGAACTCCAATTCTACTAAAAATGAAGCTGTG AATATTAGTAATGGAAGTAAAACTACCTTGTCAATGGATGAAGACATAGATTGTATCCTTATTGATGATGATGCTACTGA ATGTACTTTTAGCAAGCCGCTTGCGAAGCCAGAAGCAGCACCTGGCATAGTGACTGAAACATCATTGCAACGAAAATGCA ACTTGGTTGAGTCTTCAAGGGTTGATATTGGACTGGATGACATTTCTACTGGCAATATGGATGAAGATGTTACGTTACAA GCTAATGTTAAACAAGCTCAACCTGTGGTTAACATTAGAAAGGAGTCAACATTAACACCTTCAAGTTCAGGTATTCTGCT GGTTGAGCTTAAAATTGTGCTTCTTTCTTTCTTTTAAGAGTAGTAGATCATGTTGTAGATTTTTGCAAATAATTAAGAAA ACTTAAAGCTGGTATATCCTTCCTTGTCTTTAAGCCTCAGGGGACATCTGCTTTTCTGGTGGGTTGATTGGTCCTGATGG TACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATAGTGAATCAACATCTGCAAAAGGATCAAGTAATGGGG ATTTAATATCGGTTGGAGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCAAGGCCAAAGCTTCCCGGTGAGT TCTGTACTTATAAGAGTTTAATTTTAATGCAAAGTCAGTGTAAAGCTATTTTGGCCTATGAATGTTCTCAATCATATCCA TGCTTGATTCGTTTGAACGTAGTGGCATTACCTTATGCATATGCTTTTTATCTTTTGTAAGTTGTAATTAACCAACATAT AATTTTGTTTAAAGATGTCTATCCTTCAGAGCTTTTTACCTTTCTCTTCAGTTGTGTATCTACCTTTGGGAGTATCATTT TTGTCATGATATGCTGTCACAAAAAGTTTAAAAAATGGTTGTTGACTTGATCCTTTTCTTAATCCTTCATGTATAATAAG GGCAGAACAGTTGCTCGGTAACCATATTTGTCGTAGTTGGATCTTCTGCAGCAGAGTTTCTCTACAACATCCATCCTACA CGATTATAGCTGTTGATTCTTGTAATCAATGATTAAGATTAATCTAAATAAAAACACCTTATCAAATTAAAGAATTTATG CTGATCTCTTGGCTGCAGAGGCTGGAGAGAATCTGAATACACATTTATCTTCTAATTACCAGTATCCTGAAGATTTGTGA AACACCCATCGACTCTTGACTAAATTTGATGATATCCAAATCTTTGTTGTCAGTAAATATTTGACAACATTTTAATGGTA TTATAGCAACCTCATTATATTTGCTGATGTTGCTTTGAAGCTGTAAACTGACTTCAGAAGTTTTTTATTGGCAGGATGGA ATGGAAAATTCTACAAGTTCAAAAAGGTTGAAGTTAGGACCTAAAACAACTAGTTTGCAGTCCAGGGGGTGCCTGCAGAT AGAACACTTCTTTGGGAGGGTAAGTCAGTGATTAATTGGCCAATGTCTTGGTCTGGTTGTGATGTCCTTGTTGCAAAGAG CCAAGGAATGCATCCAATGTCAAGAACCAAAGCTATGAAAGATTAAAGGAATACAATTTTTGGAAAGTTCTCATCACTTT GAAATTTGAATGCAATGCTTTGGAGGATTTTTGGCCAAAAGTGTACCAAAATCGTGTAATTGATTCTTCGCTTCAGGATC TAACCAAATAGCAAAGTGGTCCTTTCCTTTCAGTTTACTTCAAATCAGGTTCTATATCTAACCAAGTTTTGCTTACTTGT AAATCAGCACCATTTAAAGTAGCTTAGATCTGGTTAGACAAACACAAAGTTCTTGACCATTTTCTATTGTGAAGCTAGGC TGACCTCAAAAGATTCTTAATGGACTGCTTTTTTGAATTTATTTTTGAAGTCGCCTTGTTGAAATATCACAATCTTTCTA GGCTGATGATATTTGCAGACTGTCCTCACGGATCCCTTAAAGCTATTAAGTTGAGATGCATATGGATCCTTCAAACATGT TAAGTAGTTGGAAATTCTGCAAAGTGTTTTGTAAAGATGAAGTTTGTGCGAGCATCATTGTTGATTTAATAACTGCAATA AAAATGTAGCAGTTGCATTTAGTGTATGTTTGGATTTTCATTAAACTCAAAGTCTAGTCACGTTTGAGTTAACATAGCAA AATCTTTCATCTCTGCTGATCTGCTGAGATGTGTAAGTGTGTTTTCTTATTTGTGTCAACTTTATTATTGATTAGATGTG ATTTAATTTTTTGAATGGATATAGCCATTTGGAAGAAACAATATGCATATTTGCATTAGTTGGTTGTAAGCCTTGAAATA CAGTAGTGTTCATAGTGATCTTAAATTCGAGAATTATTTGAAGGATTGGGGACTTGAAATAAATTCTTGTTATTCTTGAA GTAGTTTATAATGTTAAACTTAAGATTAATTGTAGGGACAATCACTTACTGTAAAGAGAAGAAATGAAGAACC
CDS sequence (LotjaGi3g1v0387800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGATGGCGGCGAATTCGCCGGCACCATTTGCTCGATCTGCTACGAAGGTCTCAAACCCGTCACCGAAGATCTCCA ATCCATCTCCATCTGCGGCCATGTCTTCCACGAGCTCTGCTTGCAGCAATGGTTCGAGTACTGTTCGAAATCGAAGAAGC AAACCTGCCCTGTGTGCAAGCAGAGTTGCAAGGGCAACGACGCGTGCCGGCTTTATTTTCAGTCCGTTGGAGACGCGAGC GACGCTGTTCCCACTCAGAAGTGTGTTGATTTTGAGGAAGATGCTGGTGTTCTGCGAAGGGAAGTGAAGAGGTTCGAGGC CAAAGTTTCGGGGCTTAGTTCGGTTGTGGAACGCCAAAAAAAGGAGTTACAAGAACTTAACGAAGAGTTGTGTGTTTGCA AGGAGAAGGCAAAGATAGAATCAGCATTTAAGAATGAGGCTATAAGGCAAAAATCATCTATACATTCCCAGCTTAATATC AAACTAGAGGAGCTTAGCAAGTCAACTTCAGAATGCTCTAAATTACGGGACATAAATATGGCTTTGGCTAAAGAAGTTGC AGCATTAAAATTAGTGGCTGATGTGGACCTTGATGAAGATGAGATTTTGAAGCTTGCCACCTTAGGTAATGGGGCTAACA GTAAAGACACGATAGACACATTGAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAATTAATGGCCAAGTGCAAT GTTCTAGGAAGAGGTGAGGCTCGATATAGTAAAAAGCATGAGAAGGCTAAAGAGAAGATCATTAAATTGAAGGCTAGGGT ACACGAACTGGAGAGAGCAGCTGAAGTAAAAGAGAATGAATATTTGATGTCTCTGAAAGTTTCAAAGAAAACCAAGTCTT CAAAGAAGGGTTATGAGAATAGCACCAATTCTGATTCTGATGTATTCACAGCTGGCAAATTTTCTTTAGATGAGCAGAGC AAACAAATTTCGACGCCCAAATCTGGAATTGATCTGACTGCGAAGAGTGGCAGTAATTATTTACAATCTTTGAAGATACA GAACTCCAATTCTACTAAAAATGAAGCTGTGAATATTAGTAATGGAAGTAAAACTACCTTGTCAATGGATGAAGACATAG ATTGTATCCTTATTGATGATGATGCTACTGAATGTACTTTTAGCAAGCCGCTTGCGAAGCCAGAAGCAGCACCTGGCATA GTGACTGAAACATCATTGCAACGAAAATGCAACTTGGTTGAGTCTTCAAGGGTTGATATTGGACTGGATGACATTTCTAC TGGCAATATGGATGAAGATGTTACGTTACAAGCTAATGTTAAACAAGCTCAACCTGTGGTTAACATTAGAAAGGAGTCAA CATTAACACCTTCAAGTTCAGCCTCAGGGGACATCTGCTTTTCTGGTGGGTTGATTGGTCCTGATGGTACTCATCGATAC TTGGGTAAATGGTGCAAGCGTGGACAAAATAGTGAATCAACATCTGCAAAAGGATCAAGTAATGGGGATTTAATATCGGT TGGAGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCAAGGCCAAAGCTTCCCGGATGGAATGGAAAATTCTA CAAGTTCAAAAAGGTTGAAGTTAGGACCTAAAACAACTAGTTTGCAGTCCAGGGGGTGCCTGCAGATAGAACACTTCTTT GGGAGGGTAAGTCAGTGA
Protein sequence (LotjaGi3g1v0387800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDGGEFAGTICSICYEGLKPVTEDLQSISICGHVFHELCLQQWFEYCSKSKKQTCPVCKQSCKGNDACRLYFQSVGDAS DAVPTQKCVDFEEDAGVLRREVKRFEAKVSGLSSVVERQKKELQELNEELCVCKEKAKIESAFKNEAIRQKSSIHSQLNI KLEELSKSTSECSKLRDINMALAKEVAALKLVADVDLDEDEILKLATLGNGANSKDTIDTLKRSLVLRNRSYKELMAKCN VLGRGEARYSKKHEKAKEKIIKLKARVHELERAAEVKENEYLMSLKVSKKTKSSKKGYENSTNSDSDVFTAGKFSLDEQS KQISTPKSGIDLTAKSGSNYLQSLKIQNSNSTKNEAVNISNGSKTTLSMDEDIDCILIDDDATECTFSKPLAKPEAAPGI VTETSLQRKCNLVESSRVDIGLDDISTGNMDEDVTLQANVKQAQPVVNIRKESTLTPSSSASGDICFSGGLIGPDGTHRY LGKWCKRGQNSESTSAKGSSNGDLISVGADGRGGRIKVLRTQGQSFPDGMENSTSSKRLKLGPKTTSLQSRGCLQIEHFF GRVSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 68 | 64 | 7.0E-11 | ||
| PANTHER | 5 | 563 | 559 | 1.2E-221 | – | |
| SUPERFAMILY | 10 | 63 | 54 | 1.77E-12 | – | |
| SMART | 11 | 60 | 50 | 0.0055 | ||
| Pfam | 11 | 60 | 50 | 9.0E-8 | ||
| CDD | 12 | 60 | 49 | 3.88134E-11 | – | |
| SMART | 12 | 59 | 48 | 2.6E-5 | ||
| ProSiteProfiles | 12 | 60 | 49 | 12.711 | ||
| Coils | 109 | 129 | 21 | - | – | |
| Coils | 246 | 280 | 35 | - | – | |
| MobiDBLite | 524 | 544 | 21 | - | – | |
| MobiDBLite | 525 | 544 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0387800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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