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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0388500 |
| Transcript ID | LotjaGi3g1v0388500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G61550.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68; TrEMBL-Plants: tr|K7MEZ0|K7MEZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0388500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78528231..78530707) extracted from Lotus japonicus Gifu genome v1.2.
CACAGCCTTTGTTTATTTGTTGCCCGCAGGCACGACCATGCACGATCAACCAAAAATTCCAAGCACTTTCTTCCCAGCAC ACTCCAACCTCCTCCCAATCTTCACCACCACCATTGTCCCATAACAAACATCAAAATCAAACCATAAAATAAAAAAACAC AACAACCAAATCAACACCCAATAATTTACACTTGTTTATAACTAGTGTTCCCAATTCCCTGCACTTCCAAGTTCCAAAAG TCCATGATCATCACCAAATCAACACACAACAAAACAATTTAATGCCATTTGTGTTGAGCTGAGCTGAGCTGGTCACATCA CACTAACATTAGTAGTATTAAATGCAGCAACTAATGCCCCCACCCACCCTTTTCCCCTAAGAAAAACCCTCCATTCTCCT TCCACAAATGGGTTATTCCCCTTTTCATCCCTCTCCTTCTTCTCCTCCATGTCCTCTCCTCCTTACCCTTACAGTTACTC TTCACCACCACCACCACCACCCACTTCCCCTTACCTCACCAACCTCGGCTTCGGCTACTCAATCGCCATCGCCCTCGGCT TCCTCTTCCTCCTCTCAACCCTCATCCTCTCTTCCTACCTCTGCTGCCGTGCTCTCCGCCACAACCGCCGCCGCGCCCCC GACGGCGTTGTTCTGCCGCGCATCATCTTCGTCGCCGAGGACGGCGACGAGGAGGAGGGGCCGCGCGTGTCGGGTCTGGA CCCGAACGTGATCAACTCGTACCCGAGGTTCCAGTACGCGGCGGCGGAACGCGGCCACGGCGAAACCACGTGCTCGATCT GCCTCTGCGAGTTTAAGGAAGCGGAGATGCTGAGGATGATGCCGGAGTGCCGCCACCATTTTCACCTCTGTTGCCTTGAC TCGTGGCTGAAGCTTAATGGGTCTTGCCCTGTTTGCCGGAACTCGCCGATGCCGACGCCGTTGTCGACGCCGCTGCAGGA AGTGGTGCCGCTCTCTCAGTACGCCCGCTGATAGGAGGACAATTAGGTGATTTTCTGTTTCTTGAGTTGGGAAACAATGT GGGGGTGGGGGAAGTGTAAGTAGATGTGAGAAAAAATGGTGAGATTTCAATTTTTTTTCTTTTAATTTTTTATTTTCTTT GAAGATCAAGAAAATGATTAGATGGTGGATTGGTGAGATGCCAATGCAGGACTCTTATATTTGTTGCGCTTGCATGCGGC AATGTGAACTTGTTGTTAGTGTTTGTTTGTCTCTAGGATGGAAAATCTTTGTTTTGTTGTCTGTGTTTTGGTTGATTTGA CATTGGATATCTTGATTCTTGAACTCTTGTTCTCATGTCTCAACTTATGTTGACCCACAAGCCACGACAATATCAGTGGA GGATTTCTTTGCCTTTTTTATTTTCTTTTTTCCTCTTTCTCCTTCTCTGGTTTGGAACAAGAAATCAGTACAGTTTTGTT TCCTTTTTTTAATTCATGGACTCATTTAGTTGTAAACAACTTGTATTGGTAGTAGTTCATTCTTAATTCATGCTCAACCT GCCCTTGTTTTGGCCCCATATTCTGATAATATCATCCTGAATTACAGGAACTAGATGCAATGTTTATAATGTCAATGCAC TCTCTATTTTAAGATAACCTGGTCAAGTTGTAGATTATATTATTGTCTTGCTTAAGCTGCACACTTCATAATTCATAATT CTCTAATTTTTGTAGCATGTAGTGGTGCCAGCTCGTTCTTAAAACAGTGGCATGGTTCTTTCAATCTTGCACTCACTGAT TATTGCAAAACATGAACACTATGTGCAAGCCTTGTTGGACCCGGTCTTTAGAGCCTTATGTTAGTCAATTCCTCTCTATC CTCAGTTGCATTCTATAGCTTCCTGCTATATTCTATTCCCAGTTGCTCATTATTGCCCTTATGGCTTAATAACTCAACAG GATACCACGGTACCACCTTTCATACTTTCATTGTCAAAGTAATCAGCTTCAAGGTATTATCCCACGGTTTATTTTGCTGT TCTGATTTCATGCTGTATGGATTATCTTCACTTTGAGCTTAGTATATTTGTTTACTCATACTTGATCTAAGATCTTAATT CAATGTATTGACTCTTGGAATTTTGTCTTGAGTCCGGAACATACAGGAATCACAAAACACAGATTTTGAAAATGGGGAGG ACAAGGTGATTCTATGTTTGGTTTCCAGTTAAAATCCACATTCAGTGCAGTAGAATTCGAAAACTCGCGCTACAAGGCAC CAAAATGTGAAAGCAACCTAAAATCTCCATTGACTTTTAGTTGGGTTCAATTGAAAAGTGAAAACCATTATCTTTCTACT GGGTGCTCTTACTTCTCTTTGGTTTTCCAATGTCCAAGTTCTTTTCCTTCAAGCAATTTAATCTACTGATATTTGTGTAC TAAACTTCTACCACTCCATGACTTCCTCATTCAGATGGAATGTAAGAGAGTTAAATTTAACACCCATCCATATAATT
CDS sequence (LotjaGi3g1v0388500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCTCCTCCTTACCCTTACAGTTACTCTTCACCACCACCACCACCACCCACTTCCCCTTACCTCACCAACCTCGG CTTCGGCTACTCAATCGCCATCGCCCTCGGCTTCCTCTTCCTCCTCTCAACCCTCATCCTCTCTTCCTACCTCTGCTGCC GTGCTCTCCGCCACAACCGCCGCCGCGCCCCCGACGGCGTTGTTCTGCCGCGCATCATCTTCGTCGCCGAGGACGGCGAC GAGGAGGAGGGGCCGCGCGTGTCGGGTCTGGACCCGAACGTGATCAACTCGTACCCGAGGTTCCAGTACGCGGCGGCGGA ACGCGGCCACGGCGAAACCACGTGCTCGATCTGCCTCTGCGAGTTTAAGGAAGCGGAGATGCTGAGGATGATGCCGGAGT GCCGCCACCATTTTCACCTCTGTTGCCTTGACTCGTGGCTGAAGCTTAATGGGTCTTGCCCTGTTTGCCGGAACTCGCCG ATGCCGACGCCGTTGTCGACGCCGCTGCAGGAAGTGGTGCCGCTCTCTCAGTACGCCCGCTGA
Protein sequence (LotjaGi3g1v0388500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPPYPYSYSSPPPPPPTSPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRALRHNRRRAPDGVVLPRIIFVAEDGD EEEGPRVSGLDPNVINSYPRFQYAAAERGHGETTCSICLCEFKEAEMLRMMPECRHHFHLCCLDSWLKLNGSCPVCRNSP MPTPLSTPLQEVVPLSQYAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 10 | 179 | 170 | 4.7E-90 | – | |
| PANTHER | 10 | 179 | 170 | 4.7E-90 | – | |
| Phobius | 28 | 52 | 25 | - | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 53 | 180 | 128 | - | – | |
| Gene3D | 90 | 161 | 72 | 4.2E-20 | ||
| SUPERFAMILY | 106 | 161 | 56 | 3.79E-19 | – | |
| Pfam | 114 | 157 | 44 | 1.9E-11 | ||
| SMART | 115 | 156 | 42 | 1.3E-4 | ||
| ProSiteProfiles | 115 | 157 | 43 | 12.135 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0388500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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