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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0389900 |
| Transcript ID | LotjaGi3g1v0389900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|V7ANN0|V7ANN0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0389900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78771109..78774779) extracted from Lotus japonicus Gifu genome v1.2.
CCTATATTGAAAGTGAAATGCTATCTCAAACTCCTATTCAAGTCCTATTTTCTCGGGCTTGTACAAGTTAATGTTCATTC AGAATGACATGGTAATGGTATGTATATGAACATCCATAAGCACTACATGAACTTACTATTTGTATTTATGTTGTTTAGTT TTTCTTTTCAACTACCTTATTTTGGAATTCTTTTAAAAAATATATATCATTAAAAAACACAATTTATGATTAGTGAAGTT AGGTTAGAAATGAAAAAAACAAAGAAAACCTCTTCCCAACACAGAAAAGCAGCATCCTCCATCCCAACGCAAAACCGCAC TTGAGTTTCTGTCGTTTGTGCTCTTGATGTCTCTCTATTAGTACTATTTAGTGTGTGTGTTGCTTCGCCTTGTTTATCAA CCAAATCTACACCACCCCATTTCAACCAAAATCACCTAGCACCCTTTTCTACAGTGACACTGGCAGAGCCCTTCATCCAA GGTATCTCTTCTTCCTAATGGGTTTTGCCTTACAATCCTTAAAGGGTAGCTGTTTTTAATTTTGTGATTGCTCTGTTGTG TTCATTGATCTGTTTGTTTTTTTGTATTTGATATGTTCTGCAAATTGCTTTTTTGTTCTGATTAGTCATCTCATGATCTA TGAGGTTGGTGTTTGCTTCATGGGTATTTAACCATTTGATTCCACTTTTTTGTTTTTCCTAGTTATAGTCACTACAACCC TCTTATGATGAATTCTTGTTCTGCCTCTAAATGTTGCTTCTTTGTGCAGAAAAGGGAATTCCCATTTGTTTTTTGGAACT TTTTAAATTTTTTGAATGTTGGCTTTAGCACCATTTTAAATGCTTGTAAGTAAGGAATCAGCAACTTGCAGTGTTCTCTA CTTCTCTCTATTTATGAGACATTGTTTTCTTAAAGTTATTCTTACATCTAAATTTTGTTACTTTCTTCTGTTTGATTAAA ATCTCCCCTTTGGTTTGGCGTGGTTTTCACTCATGCCTTATTTTGAGTTTTACTTTCTAAGCATGTGGGTTTAAGTGTGC TTGCGGCATTGTTTTTAGTATGGTGAGCTGAGCTTCAGATTCTATGTATCTGGATTGATGACAAATATCTTCTGTTTGAT AATTTTTTCCATTTCATATTGTGTGTTTTACCTGGCTATCTGCATCAACTGATACTAATCTGCTATTAAATTAATTAGCA ATGTTGGTTCAAAATACCAGACCTTTTATAGGATGTTTTCCTTCTGTGGGGCTTGGCTTTGATTGCTAATACCAAATCAT TTCATGATCTTAAACATATGGAACTGAGACCATGTTTTCTGATTTCATATGCGCAATACAGTTTCTGTTGCCATTTGGAC TTCTAAATACCTCAAAGGAGGATAGGTGATGTCTATACGTCCCCTTTGGATCTCTTGAGGTTCATATTTTGTATAGTTTT CTTCATAAAAGCTGATGAATTTTTTTATTTGAGTCTACTTATCTTGTTAAGTTCTGATGGGTGTTCCCTTCTAGTATTTT ATCTAATTGATCATTTGATAATTTACCATGTGCAAGGGAGTTTTAAGTTTTTAGTTCTTCTTGTTGTGTGTTATGTCTTA CTTTCCTCCACTGCTATTTATAAGGTCCTCTACAGACAGTTATGCTTATTAGTAAACATGTAATGATGTGAATTTATGTA TTGGTTTTAAAAAATTTATACTATCTTTGACATTTAGCCTTATTTAATGTATTGACTAGCGTGGAAGAGAATTAATTATT GGGGGTAATTGAATTTTGAAATTAAAAAAAGTCTAATAAGTTCAAATGGTATATATGGAAAAAGATAATAAATGTGTATG AAATTTATTAGAGGGTCTTACATAAATGGAGACCAAATATGTCTCTATGGGATCTTATATATAGGACCTGAGGGAGTATG TTTTTTCTATTGTGATATTAGTTGTGTGATTTAAGTTTGCTTTTTCCTTCTTGTGGTACTTTGCCTTATATAAGTGTGAA TTTTCATGATCAAGTGTATCATCAGGTCAGAAAACGTATGATTTTCTTTCTTATCTGGTGTTAGTATGTTTAATAGTTAC CTGAGTCTTTTTTAAATATTTTCATCAGGCCTTTCCTTCCACCTTTATTATGGAGGAAGAAACATCATGGATTAGCCACT ATGATGATGACACACAAAGGGAGACCAGAGACTCTGATTTGTTTTTGGAACGCAGTGAGGAAGTTGATATAGAAGGAACT GCTGTTTCAATGGATGTAATTTTGCCTAATGATCTGTTGGAGCGTATCCTAGCCTATCTCTCTGTTGCAAGCATTTTCAG AGCAGGTTGTGTGTGTAAAAGATGGTATGAGATTGTTACTTCAGAAAGGTTTCTATGGAACCTTTCCCATATGCTACCAC AGAAACCTTGGTACTTTATGTTTACATACTCTGATGAACCAACTGGTTATGCTTATGATCCCATCCTCCGGAAATGGTAT GGAATTGAACTTCCTTTCATTGAAACCTCTAATTGGTTCATTGCTTCATCATATGGCTTAGTTTGCTTCATGGACAACGA CAGAAGAAGTGTGTTATGCGTGTGCAACCCAATTGCCAAAATCTGCAGGAAGCTTGAAGAGCCTCCTGGTTTGAAATTTT CTGATTACAGCGCATTAGCAATCTCAGTGGACAGGAAATCCCACAGCTATACTGTGGCAATTGTAAAATCAAAGCAAGTC CCTGGAAACTTTTTCGAGTGGGATATCTCAATTCATATATACAATTCAGAGAAGGAAAACTGGGTGACGAATAAGACAGA GGTTTTGCTGGGGTGGAGAGGTGGTGATGAGAGTGTGATATGCAATGGTGTTCTATATTTCTTAGTGTACTCAACCGGTG GTGGTCATCCAGAGATCCGCCATGCACTTGTTGCATATAATATCTCTAATCGCTCATCCCAAGCTCGCTTGAGAAGGAGC TTTATTCCTGTACCTTGTTCTCTAACATGTGGCCGTTTGATGAATATGAAGGAGAAGCTCGTGATGGTGGGAGGCATTGG TAAACCTGACCGGCCTGATATAATCAAAGGTATTGGTATCTGGGTTCTTCATGATACGAAGTGGGAAGAGATTGTACGAA TGCCACATAAGTACTTCCAAGGCTTTGGAGAGCTTGATGATGTTTTTGCTAGCAGTGGCATAGGTGATCTAATATACATT CAGAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAGCATTAAACAATGGAAATGGTCACAGAAGTGCCCAGTATC AAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGGCTTGAAATTGCTCCATAGTTTATTTTACATA GAATCAAGGGTTTCTATTGGCACTTGTGTGCAACTCTGCCATTTACTCCATTGTTCTTGAGTTAAAATTTGATATGATTT CTGTGTTTTAACAGTTCATACAAAGTGTACTTGCTAATAGAGTTGGTTATTCATGGATACTGGAATATTATCAAAGCATT TTAAATACAACAGAGCAATATATATTTGTAGACTTGTTTATATATTCTATTTATAATTGTATTTGTTATCATGAGATACA TATCTAGCCCTACATATCTGCTGCATGCTGCATGGTTTGCTGATATTGTAAATCAGAGCAGAACAACATTT
CDS sequence (LotjaGi3g1v0389900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGAAACATCATGGATTAGCCACTATGATGATGACACACAAAGGGAGACCAGAGACTCTGATTTGTTTTTGGA ACGCAGTGAGGAAGTTGATATAGAAGGAACTGCTGTTTCAATGGATGTAATTTTGCCTAATGATCTGTTGGAGCGTATCC TAGCCTATCTCTCTGTTGCAAGCATTTTCAGAGCAGGTTGTGTGTGTAAAAGATGGTATGAGATTGTTACTTCAGAAAGG TTTCTATGGAACCTTTCCCATATGCTACCACAGAAACCTTGGTACTTTATGTTTACATACTCTGATGAACCAACTGGTTA TGCTTATGATCCCATCCTCCGGAAATGGTATGGAATTGAACTTCCTTTCATTGAAACCTCTAATTGGTTCATTGCTTCAT CATATGGCTTAGTTTGCTTCATGGACAACGACAGAAGAAGTGTGTTATGCGTGTGCAACCCAATTGCCAAAATCTGCAGG AAGCTTGAAGAGCCTCCTGGTTTGAAATTTTCTGATTACAGCGCATTAGCAATCTCAGTGGACAGGAAATCCCACAGCTA TACTGTGGCAATTGTAAAATCAAAGCAAGTCCCTGGAAACTTTTTCGAGTGGGATATCTCAATTCATATATACAATTCAG AGAAGGAAAACTGGGTGACGAATAAGACAGAGGTTTTGCTGGGGTGGAGAGGTGGTGATGAGAGTGTGATATGCAATGGT GTTCTATATTTCTTAGTGTACTCAACCGGTGGTGGTCATCCAGAGATCCGCCATGCACTTGTTGCATATAATATCTCTAA TCGCTCATCCCAAGCTCGCTTGAGAAGGAGCTTTATTCCTGTACCTTGTTCTCTAACATGTGGCCGTTTGATGAATATGA AGGAGAAGCTCGTGATGGTGGGAGGCATTGGTAAACCTGACCGGCCTGATATAATCAAAGGTATTGGTATCTGGGTTCTT CATGATACGAAGTGGGAAGAGATTGTACGAATGCCACATAAGTACTTCCAAGGCTTTGGAGAGCTTGATGATGTTTTTGC TAGCAGTGGCATAGGTGATCTAATATACATTCAGAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAGCATTAAAC AATGGAAATGGTCACAGAAGTGCCCAGTATCAAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGG CTTGAAATTGCTCCATAG
Protein sequence (LotjaGi3g1v0389900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEETSWISHYDDDTQRETRDSDLFLERSEEVDIEGTAVSMDVILPNDLLERILAYLSVASIFRAGCVCKRWYEIVTSER FLWNLSHMLPQKPWYFMFTYSDEPTGYAYDPILRKWYGIELPFIETSNWFIASSYGLVCFMDNDRRSVLCVCNPIAKICR KLEEPPGLKFSDYSALAISVDRKSHSYTVAIVKSKQVPGNFFEWDISIHIYNSEKENWVTNKTEVLLGWRGGDESVICNG VLYFLVYSTGGGHPEIRHALVAYNISNRSSQARLRRSFIPVPCSLTCGRLMNMKEKLVMVGGIGKPDRPDIIKGIGIWVL HDTKWEEIVRMPHKYFQGFGELDDVFASSGIGDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVSKRFPLQLFTGFCFEPR LEIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 404 | 399 | 7.6E-186 | – | |
| PANTHER | 6 | 404 | 399 | 7.6E-186 | – | |
| SUPERFAMILY | 41 | 145 | 105 | 2.34E-16 | ||
| Gene3D | 43 | 84 | 42 | 2.4E-10 | – | |
| ProSiteProfiles | 45 | 85 | 41 | 11.405 | ||
| Pfam | 45 | 84 | 40 | 1.2E-10 | ||
| SMART | 45 | 85 | 41 | 3.5E-9 | ||
| SUPERFAMILY | 109 | 383 | 275 | 7.72E-6 | ||
| TIGRFAM | 136 | 339 | 204 | 4.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0389900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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