Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0390000 |
| Transcript ID | LotjaGi3g1v0390000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G61590.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590; TrEMBL-Plants: tr|A0A0L9VLT9|A0A0L9VLT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0390000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78785706..78789215) extracted from Lotus japonicus Gifu genome v1.2.
CGGCTACACAGAAAGCACCATCAATACCAACGCCAAAACCGCACTACAATTTCATGTCTTTTGTTTGTGTCGAATTAAAA AAATCAAAACTTTATTTTCTTTTTCTCTCTCTTTCCCTCTTTTATGTCTCTCTATTCATTCTTCTCAGTGTGTTGCTTGC TTCGCCTTGTTTATCAACCAAATCTAGATCAACCCATTTGCTTCTTCTTCCATTTCAAGCAAATTTCAAGCGTGCCCATT ATGTTTTCACCAAAAAGTTAAATGCTTTTGTATTTGCTTTTGATTCCCCTTCAGTAATAATTTCATCAATCCCAAGTTTC TTTCTTCTTCTTTGGCTGAATCAGCTCACACCCTTTTCCACAGTGACACTGCCAGAGCCTTTCAACCAAGGTATTCATCT CTTTGTGATGGGCTTTGTCTTACAATCCTCAAAATATTTTCTTTTAGCCCCTTTTCAATGCTTTTGTGGTTGTTTTTCTA TTCTGTGTTCATGGATCTTGATGTGTTTTTTGAATTTGATATCTGCTTGAAATTGCTTCTTTAGTCATCTGAGGATTGAT GAGGTTGGTTTTTGCTTCATGGGTATTAGGGTATATAACCATTTGATTCCTCTTCCCCCACCATCTTTTTTGTTTTTGTT TCATAGCTTAAATCATGTCAACCCTCTTATGGAGAATTGTTGTTCTGCCTCTAAATGTTGCTTCTTTGTGCAGAAAAGGC AATTTGATTTTTGGATGAACAGTTTTTTGGATTTTTTTATTGTTTTAAAATTTGGCTTTAGCACCATTTCAAATGCTTGT AAGGACTCATCAACTTGCAGTGTTTTCTCTATTTATTAGGCATTTGTTTTTTGTTAAACTATTCTTATATGTGAATCTTG ACATCTTTTTGCTTTCGTCTGTTTGATAAAAATCTTCCCTTGGGTTATACGTGGTTTTCATTCACTTATGCCTTATATTT TGATGCCAAATTCCAGAGCTAACAAGAATATGGTTGTCTTTTAGTATGGTGAGCTGAGGTTCATATTGTATGTATCTGGA TTTGTGAGAAATATCTTATGTTTGATAGTTCTTTCATATTATTAGAAATAGATTGTAATTTTTTGTTTCTCCATTTCATA TTGAATATGTTTTACCTGGCTATCTGATACTAATGTGGTATTAAATCCATTAGCAACATTGGTTTCAAATACCAAATCCT TTTGTGGATATTTTCCTTCTGTAGGGGTTTAGCTTTAATTGCTATACCAAATCATTTCATGATCTTACTAATAGTAAGGG GACTAGACTGGGTTTTCTAATTGAGTAAGCGCCGTACTCCTTTCCGTTACCATTTAGACTTCTAAATACCTAATAGGACG ATAGGTGATTGCTATAAGTCCCCTTTGGATATTTTCAGGTTCAGAATTTGTATAGGTTTCTTCTTAAAAGGTGATGAATC TTTTCTATGAGCCTTCTTATCTTGTTAAGTTCAGATGGTTGTTCCGTTCCTGTATTTTATCTTATTCATCATTTGATTAT TTGCTATGCACTAGATGTTTTTTGTTGTGTGTGTGATGTTTTAGTTGTCTCTTTCTTTCTTGTGGCACTTCACCGTGTAT TGATGTGAATTTCCATGATCTAGTATATGTCAGCTTGAACTATGATTTTCTTTCATATTGGTGTTGGTATGTTTTAGTAA TTACCTGAGTCTGTTCTCAATATTTTCATCAGGCCTTTCCTTTCCGCCTCTATTATGGCGGGAGAAACATCATGGATCAG CGACTATGATGATGACACACAAAGTGAGACTAGAGACTTGGATTTATTTTTGGAACAAGGTGAGGAAGTTGATAATGAAG GAACTGCTGTTTCAATGGATATAATTTTGCCTGATGATCTGTTGGAGCGTATTCTAGCGTATCTCCCCATTGCAAGCATT TTCAGAGCAGGTTTTGTGTCTAAAAGATGGTATGAGATTGTTACTTCAGAAAGGTTTCTATGGAACCTTTCACGTATGCT ACCACAGAAACCGTGGTACTTTATGTTCACTAACTCTGATGAACCAACTGGTTATGCTTATGATCCCCTCCTTCGGAAAT GGTATGGAATTGAGCTTCCCTTCATTGAAACCTCTAATTGGTTCATTGCTTCATCATTTGGCTTAGTTTGCTTCATGGAC AATGAAAGAAGAAATGTGTTATGCGTGTGCAACCCAATTACCAAATTCTGCAGGAAGCTTGAGGAGCCTCCAGGTTTGAA ATTTCCTGATTACAGCTCATTAGCAATCTCAGTGAACAGGGAATCCCTCAGTTATACTGTGGCAATTGTAAAATCAAAGG AAGTCCCTGAAAACTTTTTCCAGTGGGATGTCTCAATTCATATATACAATTCAGCAAGGGAGACATGGGTGACTACTCGG AGAGAGGTTTTGATGGGGTGGAGAGGAGGTGATGAGAGTGTGATTTGCAATGGCGTTCTATACTTCTTAGTCTACTCAAC TGGTGGTGGTCATCCGGAGATTCGCCATGCACTTGTTGCATATAATATCTCTGATCATTCATCCCAAGCTAGCTTGAGAA GGAGCTTTATTCCTGTACCGTGTTCTCTTACATGTGGCCGTCTGATGAATCTGAAGGAGAAGCTCGTGATGGTGGGAGGA ATTGGTAAACATGACCGCCCTGACATAATTAAAGGAATTGGCATCTGGGTTCTTCATGATACGAAATGGGAAGAGATAGT AAGAATGCCAAATAAGTACTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCGGTGGCATAGATGATCTAATAT ATATTCAGAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAGCATTAAACAATGGAAATGGTCACAGAAGTGCCCA GTAACTAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGGCTTGAAATTGCTCCATAGTTTATTCT CCATAGGATCAAGGGTTTCTATTGGCACGTGTGTGCAAGTTTCTGCCATTTACTCCATTGTTCTTGAGTTGAAATTTGAT ATGATTTCTGTGTTTCAACAGTTCAAACAAAGTGTACTTGCTGATAAAGTTGGTTATTCATGAATATTGGAATATTATCA CAGAATTTAAAATACAACTGAGCTATTCTTAAAGGCTTTTTTATTCTCTCTATTTTGATTTGTTAGTTGTTTACCCTGAG ATATATATATATCTGCATATCTCCTGCATGGTTTGCTGTTTTTGTTAATCAAAGCAGAACAACATTTCACACATCTGTTG TTTAGCTATAGAGTTCTCATTTACTCTGAAAAATGGAGGTTGTGGTGCATCTAAACTTCTTCGTTTGATTTTATAAAAAA ACTGCCTTTGTAAAATTTGATATGAAGCTAGTTTACTAATTAGTGGAGGGTTTTTATTCTACTTTCTTTATCCCTTCTTA ATTTAGCCGGTATGTAATTCAAGTTACATATAGGTTCAACAGCTTCAAGAACTTGTATTAGATTCAGAAA
CDS sequence (LotjaGi3g1v0390000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGAGAAACATCATGGATCAGCGACTATGATGATGACACACAAAGTGAGACTAGAGACTTGGATTTATTTTTGGA ACAAGGTGAGGAAGTTGATAATGAAGGAACTGCTGTTTCAATGGATATAATTTTGCCTGATGATCTGTTGGAGCGTATTC TAGCGTATCTCCCCATTGCAAGCATTTTCAGAGCAGGTTTTGTGTCTAAAAGATGGTATGAGATTGTTACTTCAGAAAGG TTTCTATGGAACCTTTCACGTATGCTACCACAGAAACCGTGGTACTTTATGTTCACTAACTCTGATGAACCAACTGGTTA TGCTTATGATCCCCTCCTTCGGAAATGGTATGGAATTGAGCTTCCCTTCATTGAAACCTCTAATTGGTTCATTGCTTCAT CATTTGGCTTAGTTTGCTTCATGGACAATGAAAGAAGAAATGTGTTATGCGTGTGCAACCCAATTACCAAATTCTGCAGG AAGCTTGAGGAGCCTCCAGGTTTGAAATTTCCTGATTACAGCTCATTAGCAATCTCAGTGAACAGGGAATCCCTCAGTTA TACTGTGGCAATTGTAAAATCAAAGGAAGTCCCTGAAAACTTTTTCCAGTGGGATGTCTCAATTCATATATACAATTCAG CAAGGGAGACATGGGTGACTACTCGGAGAGAGGTTTTGATGGGGTGGAGAGGAGGTGATGAGAGTGTGATTTGCAATGGC GTTCTATACTTCTTAGTCTACTCAACTGGTGGTGGTCATCCGGAGATTCGCCATGCACTTGTTGCATATAATATCTCTGA TCATTCATCCCAAGCTAGCTTGAGAAGGAGCTTTATTCCTGTACCGTGTTCTCTTACATGTGGCCGTCTGATGAATCTGA AGGAGAAGCTCGTGATGGTGGGAGGAATTGGTAAACATGACCGCCCTGACATAATTAAAGGAATTGGCATCTGGGTTCTT CATGATACGAAATGGGAAGAGATAGTAAGAATGCCAAATAAGTACTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGC TAGCGGTGGCATAGATGATCTAATATATATTCAGAGTTACGGATCTCCTGCACTTCTCACATTTGACATGAGCATTAAAC AATGGAAATGGTCACAGAAGTGCCCAGTAACTAAGAGGTTTCCTCTACAGCTTTTCACTGGTTTTTGCTTTGAGCCGAGG CTTGAAATTGCTCCATAG
Protein sequence (LotjaGi3g1v0390000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGETSWISDYDDDTQSETRDLDLFLEQGEEVDNEGTAVSMDIILPDDLLERILAYLPIASIFRAGFVSKRWYEIVTSER FLWNLSRMLPQKPWYFMFTNSDEPTGYAYDPLLRKWYGIELPFIETSNWFIASSFGLVCFMDNERRNVLCVCNPITKFCR KLEEPPGLKFPDYSSLAISVNRESLSYTVAIVKSKEVPENFFQWDVSIHIYNSARETWVTTRREVLMGWRGGDESVICNG VLYFLVYSTGGGHPEIRHALVAYNISDHSSQASLRRSFIPVPCSLTCGRLMNLKEKLVMVGGIGKHDRPDIIKGIGIWVL HDTKWEEIVRMPNKYFQGFGEFDDVFASGGIDDLIYIQSYGSPALLTFDMSIKQWKWSQKCPVTKRFPLQLFTGFCFEPR LEIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 404 | 401 | 4.0E-185 | – | |
| PANTHER | 4 | 404 | 401 | 4.0E-185 | – | |
| SUPERFAMILY | 42 | 144 | 103 | 9.81E-15 | ||
| Gene3D | 43 | 84 | 42 | 8.0E-9 | – | |
| SMART | 45 | 85 | 41 | 4.4E-9 | ||
| ProSiteProfiles | 45 | 85 | 41 | 11.538 | ||
| Pfam | 45 | 84 | 40 | 2.4E-9 | ||
| SUPERFAMILY | 109 | 383 | 275 | 3.53E-8 | ||
| TIGRFAM | 136 | 338 | 203 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0390000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…