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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0392000 |
| Transcript ID | LotjaGi3g1v0392000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine acetyltransferase; TAIR: AT5G56760.1 serine acetyltransferase 1;1; Swiss-Prot: sp|Q42538|SAT5_ARATH Serine acetyltransferase 5; TrEMBL-Plants: tr|A0A072TYU4|A0A072TYU4_MEDTR Serine acetyltransferase; Found in the gene: LotjaGi3g1v0392000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79057446..79058622) extracted from Lotus japonicus Gifu genome v1.2.
CAACTTCAGTTTATGCTGGTTTCTTGGAAATTCCACACCACCCTATCAACCGCGCCACCGTGTCACTGCCGCAGTAACCG TCTCGCCGCCGTCTCTCTAAACCACACTCTCATCATCGCCACCCATCGACTAATGCCAACCGGCGAACTCCGCTACGCAC CGCCGCCGACGGCGATGTCTAACTCCTCCTCCGGCGGCGGGTTCGAAGAAGAGGGGTGGCTGTGGGCGCAGATCAAGGCG GAGGCACGCCGTGACGCTGAGTCTGAACCAGCGCTCGCGAGTTACCTCTACTCCACGATTCTCTCACACTCGTCTCTAGA ACGGTCACTGTCGTTCCACCTCGGGAACAAGCTCTGCTCCTCCACTCTTCTCTCCACGCTCCTCTACGACCTCTTCCTCA ACGCGTTCTCCTCCGACCCTTCTCTCAGCTCCGCCGCCGTCGCTGACCTCCGCGCCGCCCGGGAGCGCGACCCCGCTTGT GTGTCGTACTCCCACTGCCTACTCAATTACAAGGGTTTCCTCGCCTGTCAGGTTCCCTCAATTCTTCACTTTACCAAACC CTAATTCTTCAATTTTGCTGATTTTTCCATGCTTAATCTTTGATTTTAGGGGTGTATATATGTTTTCGATCCTAATTGTT TGATTTCTCGAGCTGCTTGTGATTTTGTGTGTTTGATTGTTGCAGGCTCACCGCGTGGCGCACCTGCTGTGGGGGCAGTC GCGGCGGCCGTTGGCTCTGGCGTTGCATTCTCGAATTGCTGATGTTTTCGCGGTGGACATTCACCCGGCGGCGACGATTG GGAAGGGGATTCTGTTCGACCATGCTACTGGAGTGGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCGATCCTG CACCACGTCACACTGGGTGGGACTGGGAAGATTGGTGGGGATCGCCACCCGAAGATTGGTGATGGGGTGCTAATTGGTGC TGGTGCTACCATTCTGGGGAATGTTAAGATTGGGGAAGGTGCCAAGATTGGTGCTGGCTCGGTGGTTTTGATCGATGTGC CGCCGCGGACGACTGCTGTTGGGAACCCGGCGAGGTTGGTTGGTGGCAAGGAGAAGCCGTCTAAGCATGAAGATGTGCCT GGGGAGTCCATGGATCATACTTCCTTCATGTCTGAATGGTCAGATTATATCATTTGA
CDS sequence (LotjaGi3g1v0392000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTTTCTTGGAAATTCCACACCACCCTATCAACCGCGCCACCGTGTCACTGCCGCAGTAACCGTCTCGCCGCCGT CTCTCTAAACCACACTCTCATCATCGCCACCCATCGACTAATGCCAACCGGCGAACTCCGCTACGCACCGCCGCCGACGG CGATGTCTAACTCCTCCTCCGGCGGCGGGTTCGAAGAAGAGGGGTGGCTGTGGGCGCAGATCAAGGCGGAGGCACGCCGT GACGCTGAGTCTGAACCAGCGCTCGCGAGTTACCTCTACTCCACGATTCTCTCACACTCGTCTCTAGAACGGTCACTGTC GTTCCACCTCGGGAACAAGCTCTGCTCCTCCACTCTTCTCTCCACGCTCCTCTACGACCTCTTCCTCAACGCGTTCTCCT CCGACCCTTCTCTCAGCTCCGCCGCCGTCGCTGACCTCCGCGCCGCCCGGGAGCGCGACCCCGCTTGTGTGTCGTACTCC CACTGCCTACTCAATTACAAGGGTTTCCTCGCCTGTCAGGCTCACCGCGTGGCGCACCTGCTGTGGGGGCAGTCGCGGCG GCCGTTGGCTCTGGCGTTGCATTCTCGAATTGCTGATGTTTTCGCGGTGGACATTCACCCGGCGGCGACGATTGGGAAGG GGATTCTGTTCGACCATGCTACTGGAGTGGTGGTGGGGGAGACGGCGGTGATTGGGAACAATGTGTCGATCCTGCACCAC GTCACACTGGGTGGGACTGGGAAGATTGGTGGGGATCGCCACCCGAAGATTGGTGATGGGGTGCTAATTGGTGCTGGTGC TACCATTCTGGGGAATGTTAAGATTGGGGAAGGTGCCAAGATTGGTGCTGGCTCGGTGGTTTTGATCGATGTGCCGCCGC GGACGACTGCTGTTGGGAACCCGGCGAGGTTGGTTGGTGGCAAGGAGAAGCCGTCTAAGCATGAAGATGTGCCTGGGGAG TCCATGGATCATACTTCCTTCATGTCTGAATGGTCAGATTATATCATTTGA
Protein sequence (LotjaGi3g1v0392000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVSWKFHTTLSTAPPCHCRSNRLAAVSLNHTLIIATHRLMPTGELRYAPPPTAMSNSSSGGGFEEEGWLWAQIKAEARR DAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLSSAAVADLRAARERDPACVSYS HCLLNYKGFLACQAHRVAHLLWGQSRRPLALALHSRIADVFAVDIHPAATIGKGILFDHATGVVVGETAVIGNNVSILHH VTLGGTGKIGGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGKEKPSKHEDVPGE SMDHTSFMSEWSDYII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 52 | 203 | 152 | 1.5E-62 | ||
| PANTHER | 64 | 336 | 273 | 1.4E-157 | – | |
| PANTHER | 64 | 336 | 273 | 1.4E-157 | – | |
| SUPERFAMILY | 69 | 306 | 238 | 2.08E-65 | ||
| SMART | 70 | 174 | 105 | 9.7E-54 | ||
| Pfam | 70 | 174 | 105 | 3.9E-38 | ||
| TIGRFAM | 144 | 303 | 160 | 4.8E-65 | ||
| CDD | 201 | 301 | 101 | 2.41256E-55 | – | |
| Gene3D | 204 | 324 | 121 | 3.7E-39 | – | |
| Pfam | 254 | 287 | 34 | 5.2E-12 | ||
| ProSitePatterns | 263 | 291 | 29 | - | ||
| MobiDBLite | 299 | 324 | 26 | - | – | |
| MobiDBLite | 307 | 321 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Cysteine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. | ||
| Molecular function | Serine O-acetyltransferase activity | Catalysis of the reaction: L-serine + acetyl-CoA = O-acetyl-L-serine + CoA. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. |
Expression pattern of LotjaGi3g1v0392000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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