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LotjaGi3g1v0392400.1

Overview

Field Value
Gene ID LotjaGi3g1v0392400
Transcript ID LotjaGi3g1v0392400.1
Lotus japonicus genome version Gifu v1.2
Description Formin-like protein; TAIR: AT3G25500.1 formin homology 1; Swiss-Prot: sp|Q9SE97|FH1_ARATH Formin-like protein 1; TrEMBL-Plants: tr|A0A0L9TFX6|A0A0L9TFX6_PHAAN Formin-like protein; Found in the gene: LotjaGi3g1v0392400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:79118426..79123968) extracted from Lotus japonicus Gifu genome v1.2.

TAGCTTATAATTAGGGACGGAGGGAGTATAAAAGAAAAAAATTGCTATGATTCCAAGTCGATTTTATTGTGTTATTCTTC AAGTGTTTCAGTTTTGTTTCAATGAATTTGAATAACAAATTTCAATTTGAAAAAAATGGGAGGATATAATTTTGCAAGAA TTTTACTCAAACTTGAAGATAAATCCATAGGAAAATATTGGTGAAATAAATTAGTAACAAAATTTGCAGGTAATAAATAG TGGGTAGGGTGGAGACGTGGAGTGCAAAATTTGAGTAAGTTTGGTGTTTAGTGTCATGTAGGCAAACCTCAATGTAGTTG AGTGTAATTTACTCAAAATGAAAAGAAAATGAGAATAATGTTTACATAATTATTATATTACCCTTTTTATATAATTTTTT TTAAATTACAACTACTCCTAAGTAGAAGCGCCACATGATGTTTGTGAGGAGAGTTACAAACTAACTATGATTTTAGTGGA TAGGAAGAGATTTAAACTCAACCTATGAAAATACGAGAGTTAAATTCAAAACTTGTGTTTAGTTATGCTGACTCAAGTTG GCATTTTGATTCGTGTTTTCGTTGGCACGAATTATTTTTGAAGCATATACTAGTATGGAGAATAAAGGAAAGTAGTGTTT ACACATCTTTTCACCTTTAGAGAGATATAGAAATAGAAGAAAGTAGTGTTTATAATTTATACACCTCTCCACCTTTAGTG ATATGATAAATGATGTGATAAAATATATGAAAGAGATAAAAAGAAAAATAGGTGGAAATGATATGGAAAAAAAAATAGAA ATGTAAGAATATGAAAGCTCCATAATAAAACCATATTAAGACCCTCAACGACTCAATATAATGAAAACATGCAATAATTG GGAGTAAAGTATTTTCATACTGCACTAGTGCACATAGTGTGAGTTGAGGGAGTATTGTAGCAAAACACAAGGAAAAGTAG AATCTTAGCTGGATCCACCACTACCCAAAATTTCCCCTTTTTTTTTTGTCCATTTTCTCTCCCCACATCTTATTCAACCT TTTCACACTATTCTTCATCTTTTCTCTCACTCCAACAAAACAATCTCCCACAAATCTTCTTCCTCTCCAATTCCCTCACT TCCCTCATTCTCTCTCTCAAGTCTCAACCCTTCCCTCACTCACACTCTCACTCTCACTCCCATTTTAGAAACAAGAGAGA GAAACAAAAGTACCACAATGTCCATGTCCACCTTCACCTTGTTTTGCATCTTTCTCATCTTTGCACCTCTTCAGCTACTC TCATCAGAACCCATCATCAACAGGAGGATCCTCCACCAACCCTTCACACAAGGCTCCCTTCCACCCTCTCAACCCCCAAA CCCACCACCACCATCACCATCTCCCTCACCTCCAAACCCAAAATACCCATTTTCCTCCACCCCCACAACCACCACCACCC AAAATGCCTCCACACCTTTCTTCCCCACATACCCATCTCCACCACCACCTCCTTCTCCCTCCTCCTTCGCCTCCTTCCCC GCCAACATCTCCTCCCTCATCCTCCCTCAAACCTCCAAACCCAAATCCTCCCACAAGCTCCTCGGCGTCGCCATTGCCGC CGTCGCCTGCGCCATCGCCGTCGTCTCTGTCTCCGCCTTCGTCTACTGCCGACGCCGCCGCAAAAACTACTCCGCCGACG AGAAGACTCTCAGATCCGACAGCAGCATCCGCCTCTTCCCCCGTGAAGCTCCCGGAACCGCCGGCAGCCGCAAGACGAGA AACGTCTCTTCCACCAGCTCAGATTTTCTCTACCTCGGCACCATTGTTAACTCCCGCGGCGATGAACTCCCAGATCCTCG CTCCGGCGGTGGCGGAGCTAGCTTGAATCCCAGGAAAATGGACTCGCCGGACCTTCAGCCTCTCCCGCCGCTAGCGCGGC AAGCTTCCAGACTCCGCGATGAAACGGCGTCGGCGGACGATGAAGAAGAGTTCTACTCGCCGAAGGGGTCTCTGGGTGGT CGTGAAAGCTCCAACGGAGCTGGATCGGGTTCTCGGAGAATGTTCAACGCCATTGCCGCTGAGAACTTCGTCGGTCGCAG CAGCACTGAGTCGTCTTCTTCTACCTACTCCTCTTCCAACTCTGCTTCACCCGATCGCTCTCACTCCATTAGCCTCTCTC CGCCGGTGAGCATAAGCCCCAGAAGATCACTACCCAAGTCGCCGGAAACCGAACTGACCCACCATTCTTCTCCTCGTATT ACTCCGCTGCCGACGCCGCCACTCGCCAGAAGCGACGGTAGGAGCTCGCTGTCATCATCCACGCTCTCATCGCCGGAAGC TTTGTCAAACCCGCACGTGCAGTCTTCAATGTCTTCAACGCCGGAGCGAGCCGTCACCGGGAAGTGTCAGTCTCCGTCGC TGTCACCGCTCTGCCGGTCGCCGGAGAGTAACCCAGATGGGTCTAGTGTTGTCCTCGGAAAGTCTCAGTCCTATCACTCA TCGCCGGAGAAAAACAAAGACGCTTCACCCAGGTTGTCCAATGCTTCTTCCGGTGGCAAGTCTGTCTCTTCGTCTTCGGC GTTTTCTCTACCGTCGCCGGAGAAAATGATGGCGATGCATCACCGTCATGGGTTGGATCAGTCTCCGACTATATCAGATG TATCAGATCGGTATAGGCATTCCCCACTTTCCTCACTTCCGTTGTCACCGACACTGCTTTCATCGCCGGAGAGAGAGGTG AACCATCAATCAGCACCTTCTCGGAAGCATTGGGAGATTCCAGACCTCTTAACACCACCCATTGTTGAATCACCAGCTGT TCCAACGGTTTTGATTCAACCAGGGGTGTCTCAGAGGAAACAGTGGGAAATACCAGTTCTTTCAACACCCAATATTGCTC CTTCTGTTATAGTTTCAGCCCCTCCTCCTGCTCCGCCACCACCGCCACCGCCACCACTGTCTAGGCAGCGTAAACAGTGG GAAGTACCTGTTCCTTCAACCCCTGTGGGACAAACCATTTCGAGGCCGCCGCAACTGTCGCCTCCTTCTAGGCCTTTTGT GTTGCAAACCCCAACTACAAAGCTTTCTCCGGTTGAGTTGCCACCGAGTTCTCAGAATCTGGGCGTGGTTGAGGAGTGTT CAGAGGAGGCATCAAAACCCAAGTTGAAGCCCTTGCATTGGGACAAAGTGAGGGCCAGCTCTGATCGTGAAATGGTTTGG GATCAGTTGAGGTCCAGCTCTTTTAAGTAAGATCTTCAATACTCATCGCCATGCTACTGTCTTGTTCTGTTGTTGTAGTT TTTTGCTTTCTTTAGATAGATAACTTTGATTGTTACTTACTACTTTTGGAGATGGCAGTTTTGATTATTCATATTTGTAT GTTGCAATCTGTGTTTTTAAACTTAGGTGCTTTTGATTGTGTTGGCTGCAGGTTGAATGAGGAAATGATCGAAACGTTGT TTATAGTGAACACGCCAAACTCAAAACCCAAGGATTCTACCCCACGTTCATCTCTTGCCCCGCAAAATCTGGAGGATAGG GTATTGGATCCTAAGAAGTCTCAGAATATTGCTATCTTGCTCAGAGCACTTAATGTGACTATAGATGAAGTGTGTGATGC ACTGTTGGAAGGTAATTTCCTTGGTTTATAGGCTTGAAGTTATGACTTAGATTTCATAGGTTTTGTGATGAACTGATGAT GATTATTGACTGGAACCATCATTGGACAACTTTTCGTTTAAGTGTTGTGGTCATGCTGTTTAAATTCTTGCTCGAGGTTT TTCTGGTCTCTGGTTATTCAAAGCATGGGTTTGCATCTTAAATCTAGCCCTCGTGCATAATCTGTATTACTTGAATGGTG ATTATGTAACTAAATCAATTCACCTGTTAACAGGTGTTACTGATACACTTGGAACTGAACTACTTGAAAACTTGTTAAAA ATGGCACCAAGCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGACTCTCCAACCAAGCTTGGTCCTGCTGAGAA ATTTCTGAAGGCGGTGCTTGGTGTACCTTTCGCATTTAAAAGGGTTGAAGCAATGCTTTACATAGCCAATTTTGAGTCAG AAGTGGAATATCTTAGGAAATCCTTTCAAACTCTAGAGGTAATGGAGTATATATTTATCTTCTTTCTCTTGCTTTCTGTC TCTTCTTTCCATTCTTCCCACATACTCTATTGTGGTAGAGGTCTAGCAGAATCGGTTAATGATGGCTGCATGTAGTTCTC AACATGTACAAGTCATGAGCTCTAGTTTTTTTGCCTTTTCTGATTGATGCATTTGCAGGTTGCCTGTGAAGAGTTGCGAA ACAGTAGAATGTTTTTGAAGCTTCTAGAAGCTGTGCTTAAAACCGGGAACCGCATGAATGTGGGGACAAACCGTGGTGAT GCTCACGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGATGTCAAAGGCGCGGATGGGAAAACCACTCTACTGCACTT TGTTGTGCAAGAAATCATTAGAACTGAAGGCGCTCGTCCCTCCAGCACCAATACTAATCAAACCCCAACCACGAATGATG ATGTCAAGTGTAGGAGGCTTGGCTTGCAGGTTGTGTCAAGTCTAAGTTCCGATCTAGCAAATGTTAAGAAGTCGGCTGCT ATGGATTCTGAAGTTCTCAGCAGTGAAGTCTCTAAACTTTCCCAAGGAATTGCGCGAATCGCGGAGGTCGTGAAGCTGAA TGAAACGGCGGGGTCAGGCGAAAGCAGGCAGAAATTTTCAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAAGAGA TTCTGAGAATTCAAGCCCAGGAAAGCGTTGCATTGTCCCTTGTGAAGGAGATTACAGAGTATTTCCATGGGAACTTGTCC AAGGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTGAGAGACTTCTTAACAGTTCTCGATCGGGTTTGCAAAGAAGT CGGCATGATAAACGAGCGAACCATGGTGAGTTCTGCACACAGATTCCCTGTTCCAGTGAACCCTATGCTTCCACAACCAC TTCCTGGACTAGTCCAATTAAAGCGACCTCACAGCTCCTCAGATGACGATAGTTCATCTCCTTAGCTGTGTTGTGACATC TTGGCTGCATCTTCTGTTAGGAACAACCTGAAACCAACCTCAGGTGATTTTGATGGGTCATCATAGGTGCATTATGGTCT GGCCCTTATGATTTTTTACCTTTTCTAGCTAAATTGTAAAAATCCTTGTAAAAGATTCGAGCTATAATGTTATAGATTAT ATATATAGAGTAGAAGATTTTCTTTTGGAAAAATAAGCTTTGTCTTACATGTATGAGTAGGACATGTATTATAACTTTAT GTACAAAGCTATTCAATTGGAGACACTTGGTTGCAAACTTTTTTAGGTGATACATTTAAGTCCAGATTTAAATATGATTT ACTATGATTTAATTGAAACCCATATATTGAAGGTATCTTATGTGGGTAGTGAGGGGTCAAATTTGGGAAGAGCAAAGCAC TATATTTTATACAAGGGAAAAGA 

CDS sequence (LotjaGi3g1v0392400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCATGTCCACCTTCACCTTGTTTTGCATCTTTCTCATCTTTGCACCTCTTCAGCTACTCTCATCAGAACCCATCAT CAACAGGAGGATCCTCCACCAACCCTTCACACAAGGCTCCCTTCCACCCTCTCAACCCCCAAACCCACCACCACCATCAC CATCTCCCTCACCTCCAAACCCAAAATACCCATTTTCCTCCACCCCCACAACCACCACCACCCAAAATGCCTCCACACCT TTCTTCCCCACATACCCATCTCCACCACCACCTCCTTCTCCCTCCTCCTTCGCCTCCTTCCCCGCCAACATCTCCTCCCT CATCCTCCCTCAAACCTCCAAACCCAAATCCTCCCACAAGCTCCTCGGCGTCGCCATTGCCGCCGTCGCCTGCGCCATCG CCGTCGTCTCTGTCTCCGCCTTCGTCTACTGCCGACGCCGCCGCAAAAACTACTCCGCCGACGAGAAGACTCTCAGATCC GACAGCAGCATCCGCCTCTTCCCCCGTGAAGCTCCCGGAACCGCCGGCAGCCGCAAGACGAGAAACGTCTCTTCCACCAG CTCAGATTTTCTCTACCTCGGCACCATTGTTAACTCCCGCGGCGATGAACTCCCAGATCCTCGCTCCGGCGGTGGCGGAG CTAGCTTGAATCCCAGGAAAATGGACTCGCCGGACCTTCAGCCTCTCCCGCCGCTAGCGCGGCAAGCTTCCAGACTCCGC GATGAAACGGCGTCGGCGGACGATGAAGAAGAGTTCTACTCGCCGAAGGGGTCTCTGGGTGGTCGTGAAAGCTCCAACGG AGCTGGATCGGGTTCTCGGAGAATGTTCAACGCCATTGCCGCTGAGAACTTCGTCGGTCGCAGCAGCACTGAGTCGTCTT CTTCTACCTACTCCTCTTCCAACTCTGCTTCACCCGATCGCTCTCACTCCATTAGCCTCTCTCCGCCGGTGAGCATAAGC CCCAGAAGATCACTACCCAAGTCGCCGGAAACCGAACTGACCCACCATTCTTCTCCTCGTATTACTCCGCTGCCGACGCC GCCACTCGCCAGAAGCGACGGTAGGAGCTCGCTGTCATCATCCACGCTCTCATCGCCGGAAGCTTTGTCAAACCCGCACG TGCAGTCTTCAATGTCTTCAACGCCGGAGCGAGCCGTCACCGGGAAGTGTCAGTCTCCGTCGCTGTCACCGCTCTGCCGG TCGCCGGAGAGTAACCCAGATGGGTCTAGTGTTGTCCTCGGAAAGTCTCAGTCCTATCACTCATCGCCGGAGAAAAACAA AGACGCTTCACCCAGGTTGTCCAATGCTTCTTCCGGTGGCAAGTCTGTCTCTTCGTCTTCGGCGTTTTCTCTACCGTCGC CGGAGAAAATGATGGCGATGCATCACCGTCATGGGTTGGATCAGTCTCCGACTATATCAGATGTATCAGATCGGTATAGG CATTCCCCACTTTCCTCACTTCCGTTGTCACCGACACTGCTTTCATCGCCGGAGAGAGAGGTGAACCATCAATCAGCACC TTCTCGGAAGCATTGGGAGATTCCAGACCTCTTAACACCACCCATTGTTGAATCACCAGCTGTTCCAACGGTTTTGATTC AACCAGGGGTGTCTCAGAGGAAACAGTGGGAAATACCAGTTCTTTCAACACCCAATATTGCTCCTTCTGTTATAGTTTCA GCCCCTCCTCCTGCTCCGCCACCACCGCCACCGCCACCACTGTCTAGGCAGCGTAAACAGTGGGAAGTACCTGTTCCTTC AACCCCTGTGGGACAAACCATTTCGAGGCCGCCGCAACTGTCGCCTCCTTCTAGGCCTTTTGTGTTGCAAACCCCAACTA CAAAGCTTTCTCCGGTTGAGTTGCCACCGAGTTCTCAGAATCTGGGCGTGGTTGAGGAGTGTTCAGAGGAGGCATCAAAA CCCAAGTTGAAGCCCTTGCATTGGGACAAAGTGAGGGCCAGCTCTGATCGTGAAATGGTTTGGGATCAGTTGAGGTCCAG CTCTTTTAAGTTGAATGAGGAAATGATCGAAACGTTGTTTATAGTGAACACGCCAAACTCAAAACCCAAGGATTCTACCC CACGTTCATCTCTTGCCCCGCAAAATCTGGAGGATAGGGTATTGGATCCTAAGAAGTCTCAGAATATTGCTATCTTGCTC AGAGCACTTAATGTGACTATAGATGAAGTGTGTGATGCACTGTTGGAAGGTGTTACTGATACACTTGGAACTGAACTACT TGAAAACTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAACGTAAATTGAAGGAACATAAAGATGACTCTCCAACCAAGC TTGGTCCTGCTGAGAAATTTCTGAAGGCGGTGCTTGGTGTACCTTTCGCATTTAAAAGGGTTGAAGCAATGCTTTACATA GCCAATTTTGAGTCAGAAGTGGAATATCTTAGGAAATCCTTTCAAACTCTAGAGGTTGCCTGTGAAGAGTTGCGAAACAG TAGAATGTTTTTGAAGCTTCTAGAAGCTGTGCTTAAAACCGGGAACCGCATGAATGTGGGGACAAACCGTGGTGATGCTC ACGCATTCAAGCTCGATACACTTCTCAAGCTGGTTGATGTCAAAGGCGCGGATGGGAAAACCACTCTACTGCACTTTGTT GTGCAAGAAATCATTAGAACTGAAGGCGCTCGTCCCTCCAGCACCAATACTAATCAAACCCCAACCACGAATGATGATGT CAAGTGTAGGAGGCTTGGCTTGCAGGTTGTGTCAAGTCTAAGTTCCGATCTAGCAAATGTTAAGAAGTCGGCTGCTATGG ATTCTGAAGTTCTCAGCAGTGAAGTCTCTAAACTTTCCCAAGGAATTGCGCGAATCGCGGAGGTCGTGAAGCTGAATGAA ACGGCGGGGTCAGGCGAAAGCAGGCAGAAATTTTCAGAATCAATGAACAAGTTCATGAGAATGGCTGAGGAAGAGATTCT GAGAATTCAAGCCCAGGAAAGCGTTGCATTGTCCCTTGTGAAGGAGATTACAGAGTATTTCCATGGGAACTTGTCCAAGG AAGAAGCTCATCCATTTAGAATCTTCATGGTAGTGAGAGACTTCTTAACAGTTCTCGATCGGGTTTGCAAAGAAGTCGGC ATGATAAACGAGCGAACCATGGTGAGTTCTGCACACAGATTCCCTGTTCCAGTGAACCCTATGCTTCCACAACCACTTCC TGGACTAGTCCAATTAAAGCGACCTCACAGCTCCTCAGATGACGATAGTTCATCTCCTTAG 

Protein sequence (LotjaGi3g1v0392400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSMSTFTLFCIFLIFAPLQLLSSEPIINRRILHQPFTQGSLPPSQPPNPPPPSPSPSPPNPKYPFSSTPTTTTTQNASTP FFPTYPSPPPPPSPSSFASFPANISSLILPQTSKPKSSHKLLGVAIAAVACAIAVVSVSAFVYCRRRRKNYSADEKTLRS DSSIRLFPREAPGTAGSRKTRNVSSTSSDFLYLGTIVNSRGDELPDPRSGGGGASLNPRKMDSPDLQPLPPLARQASRLR DETASADDEEEFYSPKGSLGGRESSNGAGSGSRRMFNAIAAENFVGRSSTESSSSTYSSSNSASPDRSHSISLSPPVSIS PRRSLPKSPETELTHHSSPRITPLPTPPLARSDGRSSLSSSTLSSPEALSNPHVQSSMSSTPERAVTGKCQSPSLSPLCR SPESNPDGSSVVLGKSQSYHSSPEKNKDASPRLSNASSGGKSVSSSSAFSLPSPEKMMAMHHRHGLDQSPTISDVSDRYR HSPLSSLPLSPTLLSSPEREVNHQSAPSRKHWEIPDLLTPPIVESPAVPTVLIQPGVSQRKQWEIPVLSTPNIAPSVIVS APPPAPPPPPPPPLSRQRKQWEVPVPSTPVGQTISRPPQLSPPSRPFVLQTPTTKLSPVELPPSSQNLGVVEECSEEASK PKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMIETLFIVNTPNSKPKDSTPRSSLAPQNLEDRVLDPKKSQNIAILL RALNVTIDEVCDALLEGVTDTLGTELLENLLKMAPSKEEERKLKEHKDDSPTKLGPAEKFLKAVLGVPFAFKRVEAMLYI ANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFV VQEIIRTEGARPSSTNTNQTPTTNDDVKCRRLGLQVVSSLSSDLANVKKSAAMDSEVLSSEVSKLSQGIARIAEVVKLNE TAGSGESRQKFSESMNKFMRMAEEEILRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVG MINERTMVSSAHRFPVPVNPMLPQPLPGLVQLKRPHSSSDDDSSSP 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 6 6 -
Phobius 1 23 23 -
SignalP_EUK 1 23 23 -
TMHMM 5 27 23 -
Phobius 7 18 12 -
PANTHER 16 1083 1068 0.0
PANTHER 16 1083 1068 0.0
Phobius 19 23 5 -
Phobius 24 120 97 -
MobiDBLite 36 96 61 -
MobiDBLite 40 65 26 -
MobiDBLite 66 81 16 -
MobiDBLite 82 96 15 -
Phobius 121 143 23 -
TMHMM 121 143 23 -
Phobius 144 1086 943 -
MobiDBLite 201 513 313 -
MobiDBLite 240 256 17 -
MobiDBLite 283 327 45 -
MobiDBLite 352 420 69 -
MobiDBLite 428 452 25 -
MobiDBLite 469 502 34 -
MobiDBLite 558 580 23 -
MobiDBLite 558 577 20 -
SUPERFAMILY 562 1044 483 2.35E-100
ProSiteProfiles 633 1058 426 56.728
SMART 633 1047 415 2.2E-142
Pfam 637 1032 396 1.3E-120
MobiDBLite 682 700 19 -
MobiDBLite 682 704 23 -
Gene3D 700 1052 353 9.8E-90
MobiDBLite 1065 1086 22 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0392400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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