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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0399000 |
| Transcript ID | LotjaGi3g1v0399000.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|I1KHT0|I1KHT0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0399000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80080559..80087605) extracted from Lotus japonicus Gifu genome v1.2.
CACAAATGTTTTGAAATTAAAAAAAAAATTAGAAACACAATTTTGTTTATTCTCATAGAAAAATGGGCCACATTACTGGA CTCATTGATTGGGCCCAACAATGACTCTCTACTCTTAAAATCACCCCCCTGAAACCAATAATGTGAAAACGAGAAAATTT TCAGGTACGTTTTCTCTCTTCTTCTTTCTCTTCAATTTTCATCAACCATCGCTTTTCTAGGGTTTCTGGGTTTCGGAAAT TCATGCGATTCTCCTTTTCGAATCTGTTGAAATTCCAAAGGGGTTAGGGCATTGTGGGTTTTGTATCTTTTTCTTCTCTA TTATTTGCTTGATTTTTGGTTCGGTGTGTGAAATTAGGGTTTGATTCTGGAGACGAATTGAGAGCTGAAGATGAGGCCGA TTTTCGCTGGGAACTTGGAGTATGATACCCGTCAGTCTGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGAACGC TTGGACATGAAATCTGGTAAATTTCTTGCTTTTTTGTGTCTTGTAATGTACAGAAATTTGGATTTAACTGTTGTAGTTTC CCCTGTCTTGATGAAAAGTTCAAACCTTTTTGCTCAGCATGATTTTGGGTATCTTAAAAATGAGGTCATTCTTTTTATCA GTGTTGTCAAATAGGGGCTATAGTGTAGCGGGTATTTGGCTAATTGTGATGCCGAATTGCCCATTATAGCGCGCTATTCC CGCTAGTTGCTGCTAAATAGCCGCTGAAATAGCGGATGTTTGGCTCACCGCGATGGTCCGCGATCTTGATTTGACAACAC TGCTTTTGATTAGTTTATATCTTATTATTTTCTCTTTCTCGAGTATAAAGAGTTATACTTTTTCTTTATTGTTTTCTTTT AATCCCATATTGAATGTATTGAATGACCAATTGTCAAACCAAAATCACAGTCCTATAGGCTCTGTCATTTAGGGATTGTA AATAATGGCTTTTCTTAATATTACTGGATGTAATAGATTGTGTGAAGTAAGGCTGTCAGTTATAGGTTAACAGTGTATTG TAGTTGAATAAGGTATGAGGATGATTTTCAGTTAATCATCAAACAGGTGCTGAGAACTAGGATAGTGCGACGGCCATTTG GAACTGGGATATGGAGTTATGGACATGTAGCTGCTTTTTTGTGGCTTAAATGTCTAGTACTCTAGTTCCTGTATCCTTAT GGGAAAAAAATGGAAGCCACAAAAGAACAATGTCTTTGCGAAAATCCTCTGGTATTTAAGTTTTTCTTTTGACGCAGGAA CTTCTACCATGGGAAAGTGTTCTGAGCTTCACTATCTTGGCTTGCCAACCTCTCTGAAAAATATTTTTTTGGAAGGAAAC CTTCCTGCTTGTCATCTGCATTTACTCATCTGATCATTCGTCACACTCACTCACCTTCTGACCCAACATTGACATTTCCA CCAGAATGTTCTTAGGGGATCATCAATCAATTTATTAAGCCATGCCTAGCTTCACTTAAAATAGGGGATCAATGAAATTC TATCAAGTCTCATGCCATTCTATTTCTGAATTCACTTGTGCTGTCTGAATGGAGAAGCATGCTTGGCAATGACAATCTCA GATCTGAATTTTGGATTTAAACCTTTAAATGCAATCATGATTTTTGTTCATCATTCAACGCCCCTACAGCTTCATGTGTA TCAGCCCTCACTTATATTCAGGTGTTGTATTACTCTGCTTTTGATAGGGAAAAGGATTTCGTAATTTGGCTGGTGTGCTT CTGGTGAGGGATAACATGCTGATGTCTTTCATCATCATCTGTGTCTCTAATACTAGTAATGGTGCAGGTTTTGCTTTTGT CTATTTTGAGGATGAGCGTGATGGTGAAGAAGCAATTCGCGCACTTGACAATATTCCATTTGGTTATGACAAGCGACGTC TGTCTGTGGAGTGGGCTAGGGTATGGTAGTATTTTCATGATTATGTTTTACTTTTATGTTCTTATATTGATGAGATCATC AGAGTAACACAATGTCCTGTCTATGTTCAATAAGAACATTCTGATCTGTTTTTTTTTTGTTTCTGCAGGGTGAACGTGGG CGTAATCGTGATCCCCCAAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAG AGTTCGTGATATAGAAAAGCACTTTGAACCTTATGGCAAGCTTCATCATGTTCGAATTCGTAGGAACTTCGCATTTGTGC AGTTTGAAACACAAGAAGATGCTACCAAAGCTCTAGAGTGTACAAATATGAGGTCAGTGATGAGATTATAATATTTTGCA TAGAAATTCCTGAGTTTTTTTTTTTACTATGTTCAAGTGATGAATTTCTGATCTTGTTGCACTTGCAGTAAGATACTGGA CAGGGTGGTGACTGTAGAGTATGCTCTGAGGGATGATAGTGAGAGGGGTGACCATTATGACAGCCCTAGAAGAGGAGGGG GTTATGCAAGGTCGCCTAGTCCAGCTTATCGAAGGCGACCAAGTCCTGATTATGGTCGTCCTCGCAGTCCTGTATATGAT AGGTATAATGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGACCAGGAGTCC TGATTATGGCAGGCCCAGGAGCCCTGTAAATGCTAGATTTCGCAGGTATTGAATTTGAAGCCAGTTAACTATCTCCTTGA GTTGTGTTCTCTCTATTCTCAGAGCTAATCTACTCTGTTATCTTGTCTGCAGCCGTTCACCTGTAAGGAGGTCAAGAACT TAGGTGATATCTGATTCCAGTGGCACTGTCGCTTTCTGGATATTGAAATTGTGAATGGGACATTATGTAGGAAATGTACT TCTCACAACTTTTATGCATTTTATTTGGTTTGGGTCTTTAGTGTTTAGAAGTATGACCTGAATATCAATGTTTGGAGGCG GAATTATTGATGCATGTTTTTGCAGGGATATGTTGTGTTTAAAGTTGATGTTTTTGGACCCTAGTTCTGTAACTACTGTG ATTGAATGTCCTTTTACTAGTGTTGATTGAAACACCTTAATATCAGAAATGGTTACATGACAATGGTCACGAATGCTGAT TTTGGGGAAATGATATCTGTGTGAGAAGGCAAGATAGAATAGTTCTTAGGGTTTAGTTTCGATAATCCAAACTATACCGA AAAAATATATTTAGAACTAGTGCCATCTCACACAGATATCATTTCCCCAAAATCAGCACTAGGTGGAAATTTTGGTTTAG TTTTGATAATCCAAACTAAACCTAAAAAAAATATTTTTCAGAATCACTAGTTCTTTTCTGTAAAATGACTAAAATTAGTT TTTGCTATAATTATTTTTCCCTTCCATCTTGTTAACCTATTGCCTTTTCAACCACATTTTTTTTGCAAAGCAACTGGTTG AATCATGTTCCCACTAGGGTGGGGAACTTTTATTTTGGTCCACCCATAGACCATTATTAATAACCGTTGGATCTTGGAAT ATAAGAATATTCTTTAGATCAACGATCAAGATTGATTTTCTATTAAAAGGGCATAATTGTCCCCTAAAATCTCCAAACCC AATCTCCTTCCTCCTCATTGTGATTTTTTTCAGGAACCAAACATGCTATTCACGTAGCAGAGCTTAGAAATGTGCCAAAT CAATTAAGATTTCAATTGCAAGATACCAAATCAGTACTCAACCCAAATAACATTGAAATTAAAGTTCACACACGCCCACA CACAGTAAGACAGACGGAAGAGATCTTTCTTCCACTTGATAAACAAGAAGCAAGTGAAGAGAACATGTAAAAAAAAAAAA AAAACACAGTGAAAACAGGAGGAAGGTGAAGAGTTTTGATTTTTTTTCCAGATTTGGTTGGAGTTTGATGGTTCAGCCAT ATCTCTCTCAAGCTGCTTCAAGGTCCCTTCTAAAGTTCTAACCTTTTTCATCTCTTTTCAATTTTTGTGTTCTGATGCCT TCTTATTATGATGATAGAGGCAAGAAAAATTGGGGCTTTCTTGCAACTTCAACAAAAAAAAAAAACGGGAGGAAGGTGAA GAATCATATTGGTTTGTGAGGCTGGGAAGTAAGGAGAGAGAAACTTCAACCCAGATCTGAAACTTCGAGGTCAGTTTGCC GATTTCAAGATGTATTTTGGGGTTAAGAGGAGCTCAGATCTGGGGTTTGTTTGCGGAGGTGGTGAAGACGGTGCAGAGGA GCGGTGGTCGTTGGTTGCTTGTGACTACAGGCGCCTCTCTTCCCACAGCCGGCGATGTCTGTTATACCCTTGGTCTATGG GTGGACCAAAATAAAAGTTACCCACCCTAGTGGGAACCTTGAATCATAGCCTCAATTGATTCTATTATTTACTTTTCGAT TGCTATATCACTTTATTTAAACACAGTTTCGGCCTCAAAACAAAAAAATTTAAACCCAGGTTCTGTATTATAAAATTTTA ATGGTTGGTATGCTTTGTTCTGTTGAGATCATTTTTGCAGCGGTTTGGTGTTAAACTCAATGCTAATGTAATTTCATGTA TCTTAATGCCTCATTAAAGAGTTAGAATTTGTCAAGTTTTACGGGGATTGAAGAAGTAAGACTTTAATACGTTTGGCTTC AAAATATCTCAGTGTACACAACTGCAACAATGTTATAACGTGTTTTGTGTGCAAATTTTTCTTTATGAAAAGTCCATAAT AAAATGAAAAGTCCCTCCTAATACTATTATCCTAAAATGTCAAGGTTCTTTATTTGCTCAACGTGGGGCCTTACAAAGTT CAAGTGGAAATCATGAATGGTGATGGAAGTTTTAACAAATTGTCAAGTGTTAAAAATGTGAGTAATTTTACACGGCCTAA AATATTTAACAAAAGTAAACCAAAAATCGTGAAAAATCGTGATGGAAGTGTTAACATAAACCAGGAGTAATACTGGCAAA AGAATCTAGGTTGTTTAGTACACCATCCGTTCCAGAAAGTTTGTTGTTTTGCACCATTTTTCAATATCCCAAAATGTTTG TTGTTTTAGAAAACCAATGCATTTTTTGCTAATTTTTTCCACCTCTACCCTCATTTAATACATTTTCTCTCACTTATCAC CTTTCATATTAACTAACCACAACTCTTCACTATTAATTACATTCTTCTTTATCTAAGTATAATTTAATAGTTGCACATCA TACTAGTAAAATCAAATAAGGGCAATTTAGTCAAATTATGCTATTAATAATTGTTTTCTTACTCTTTGTGCCACAACCTT AAACTACAAACTTTCTGGAACAGAGGGAGTAGTATTTTCTTAATTAAATATATTAATCTTTAAGATAATAATTTTAGTAA TTTGTTTCTGGTAAGAACAAAAATATTCATTTTTCCTCTGATCCTTTGATACTTAACCACTGAATAATGAACCTGATCTT GGTATTTGGTCATTTCAAGCACTGAATTTTGTAGCTGAAAGTTAACGCAACTACACGTACATCTCTTTGACATTGATGTG CCTTGCTTCCACACAAAGTTATCAAGGAAAATTCAAGCAACACTCACTTTAACAGTTGAACGTGCTCTTATTAATTCATT GAAATCCATGTACGTCCCACTAGTGAAACTAAAATGAATTCTAACCAATCAATAAGAGAGAGCGGTCCTCAAGTCATCAA TGTTAGATGGTCTTTGTTTTTGTCTGTTGTTCTAACACTTGACTTTAGGAAAAGGGTGACTTTGAGTTAGTTTGGACAAA CATGTCGACAAGTATTAACGGAAGAAGAAAATAAAATAAATCAAGAAGATAAACTGAATCCAAATTTTTTCTAAGGTTAA AATTAGTTTATGCACCTCAACTTTTTCAGAAACTCTGAATCTAATTTCTCCATAAACACCTAGAGTTGTAAGAATCTTTT TCAAATAGTTTCCTTTAGTAATAACATCTTTGGATCAACATTTCTTTCATCGTACTCAATTCTGACATTCAAAAACTATT TCCAGAAGTTTTTTAGCTTCAAAATCAAATAATCAATTGCACTAGAATTGGAAACAAACCTTAGAGAAAGCTACTAGACC TTGTAAAATGAAACTATGAACTGATGTTAGTATTTACTAGTGAGATTTAAGAAAAACACCTTGGCTTCACTGAAGAGATT CATTTCATTAATGATGGAATACCCTTTAGGACACAGATGAGCTTCATCAAATTTTGCAACTAATAAATACATATATGTAG TAACTTACAATTGATCATCTATAATAGCATGATTGGACAAGTTTCTTTTTCATCGGAATGAATTCTAAAACTCAGAAACT ACTCACATAAGCTTCATTCCAAATTGATTCTTGCTCCGGAATCAACGGCACTAAGTTGATGATTTTCTGAACTCTTCTTC AAGTGCCTTCTCCAACCACGACTCAGCATCCTCCATCATTCCAGGGCTAAGCCTCACCATGAGGATGCAAAATTCAGTCT CATTCAGGCTTCCATCTCCATCAAGATCACCCTGTTTAACCATCTCCTCTGCATCCTCCTTGGTCATCCCATCCATGCCA AGTAGAGCTGAATTTCTCATCAGACTCTCGCTTGAGATCAAACCTGTTTCAGGATCTGATAGAAGCTTGAAGCCCCCACA TAGTTCAGACACGAAGGTTTCCACATCAAGCTTCTCTGCCATCACTGGTAGCAAGTCCTCAAACTCTTCTGCTTCCATGG TGGTTTTCTTCATGTCCTTGTTGCTTTCCATTGTAAAGGTCAAGGAATTAACTTTCCTTTTTTTCCTTCTAGTTTATGAA CATTGAAAGAAAGGTTGAGGAAGAAAGCGACTTTGGAAGATTTGTATATTATATTATAATGAGAAATGAATGAGGATTTG TTAGGACTATATGGCCTTTTATAGAGATCTATAGAAGTTCTTGGCCTTTTGGAGTAACTCTAATGGTAGCATAGAATTAA TTTGGTAAAATTAATTATAGTTAAAATGAGTTGAAATAAATTGATAGTGGAATAGTTTCTATGTACATGAATTAAAATCT TTTTTAG
CDS sequence (LotjaGi3g1v0399000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCGATTTTCGCTGGGAACTTGGAGTATGATACCCGTCAGTCTGAGCTTGAACGCTTGTTCTCCAAGTATGGCAG GATTGAACGCTTGGACATGAAATCTGGTTTTGCTTTTGTCTATTTTGAGGATGAGCGTGATGGTGAAGAAGCAATTCGCG CACTTGACAATATTCCATTTGGTTATGACAAGCGACGTCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTAATCGT GATCCCCCAAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGA TATAGAAAAGCACTTTGAACCTTATGGCAAGCTTCATCATGTTCGAATTCGTAGGAACTTCGCATTTGTGCAGTTTGAAA CACAAGAAGATGCTACCAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGACTGTAGAGTATGCT CTGAGGGATGATAGTGAGAGGGGTGACCATTATGACAGCCCTAGAAGAGGAGGGGGTTATGCAAGGTCGCCTAGTCCAGC TTATCGAAGGCGACCAAGTCCTGATTATGGTCGTCCTCGCAGTCCTGTATATGATAGGTATAATGGACCAGACAGGCGGA GGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGACCAGGAGTCCTGATTATGGCAGGCCCAGGAGCCCT GTAAATGCTAGATTTCGCAGCCGTTCACCTGTAAGGAGGTCAAGAACTTAG
Protein sequence (LotjaGi3g1v0399000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPIFAGNLEYDTRQSELERLFSKYGRIERLDMKSGFAFVYFEDERDGEEAIRALDNIPFGYDKRRLSVEWARGERGRNR DPPKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKLHHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVTVEYA LRDDSERGDHYDSPRRGGGYARSPSPAYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRPRSPDYGRTRSPDYGRPRSP VNARFRSRSPVRRSRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 228 | 228 | 6.8E-112 | – | |
| PANTHER | 1 | 228 | 228 | 6.8E-112 | ||
| Gene3D | 1 | 82 | 82 | 3.7E-19 | ||
| ProSiteProfiles | 2 | 74 | 73 | 16.978 | ||
| SMART | 3 | 70 | 68 | 7.6E-14 | ||
| SUPERFAMILY | 3 | 165 | 163 | 3.53E-34 | ||
| Pfam | 4 | 61 | 58 | 3.8E-14 | ||
| Gene3D | 83 | 173 | 91 | 1.5E-19 | ||
| ProSiteProfiles | 91 | 162 | 72 | 14.982 | ||
| SMART | 92 | 158 | 67 | 1.7E-16 | ||
| Pfam | 93 | 155 | 63 | 8.1E-12 | ||
| MobiDBLite | 165 | 256 | 92 | - | – | |
| MobiDBLite | 205 | 232 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi3g1v0399000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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