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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0399000 |
| Transcript ID | LotjaGi3g1v0399000.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31; TrEMBL-Plants: tr|G7LAU9|G7LAU9_MEDTR RNA-binding (RRM/RBD/RNP motif) family protein; Found in the gene: LotjaGi3g1v0399000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:80084803..80087215) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGCCGATTTTCGCTGGGAACTTGGAGTATGATACCCGTCAGTCTGAGCTTGAACGCTTGTTCTCCAAGTATGGCAG GATTGAACGCTTGGACATGAAATCTGGTAAATTTCTTGCTTTTTTGTGTCTTGTAATGTACAGAAATTTGGATTTAACTG TTGTAGTTTCCCCTGTCTTGATGAAAAGTTCAAACCTTTTTGCTCAGCATGATTTTGGGTATCTTAAAAATGAGGTCATT CTTTTTATCAGTGTTGTCAAATAGGGGCTATAGTGTAGCGGGTATTTGGCTAATTGTGATGCCGAATTGCCCATTATAGC GCGCTATTCCCGCTAGTTGCTGCTAAATAGCCGCTGAAATAGCGGATGTTTGGCTCACCGCGATGGTCCGCGATCTTGAT TTGACAACACTGCTTTTGATTAGTTTATATCTTATTATTTTCTCTTTCTCGAGTATAAAGAGTTATACTTTTTCTTTATT GTTTTCTTTTAATCCCATATTGAATGTATTGAATGACCAATTGTCAAACCAAAATCACAGTCCTATAGGCTCTGTCATTT AGGGATTGTAAATAATGGCTTTTCTTAATATTACTGGATGTAATAGATTGTGTGAAGTAAGGCTGTCAGTTATAGGTTAA CAGTGTATTGTAGTTGAATAAGGTATGAGGATGATTTTCAGTTAATCATCAAACAGGTGCTGAGAACTAGGATAGTGCGA CGGCCATTTGGAACTGGGATATGGAGTTATGGACATGTAGCTGCTTTTTTGTGGCTTAAATGTCTAGTACTCTAGTTCCT GTATCCTTATGGGAAAAAAATGGAAGCCACAAAAGAACAATGTCTTTGCGAAAATCCTCTGGTATTTAAGTTTTTCTTTT GACGCAGGAACTTCTACCATGGGAAAGTGTTCTGAGCTTCACTATCTTGGCTTGCCAACCTCTCTGAAAAATATTTTTTT GGAAGGAAACCTTCCTGCTTGTCATCTGCATTTACTCATCTGATCATTCGTCACACTCACTCACCTTCTGACCCAACATT GACATTTCCACCAGAATGTTCTTAGGGGATCATCAATCAATTTATTAAGCCATGCCTAGCTTCACTTAAAATAGGGGATC AATGAAATTCTATCAAGTCTCATGCCATTCTATTTCTGAATTCACTTGTGCTGTCTGAATGGAGAAGCATGCTTGGCAAT GACAATCTCAGATCTGAATTTTGGATTTAAACCTTTAAATGCAATCATGATTTTTGTTCATCATTCAACGCCCCTACAGC TTCATGTGTATCAGCCCTCACTTATATTCAGGTGTTGTATTACTCTGCTTTTGATAGGGAAAAGGATTTCGTAATTTGGC TGGTGTGCTTCTGGTGAGGGATAACATGCTGATGTCTTTCATCATCATCTGTGTCTCTAATACTAGTAATGGTGCAGGTT TTGCTTTTGTCTATTTTGAGGATGAGCGTGATGGTGAAGAAGCAATTCGCGCACTTGACAATATTCCATTTGGTTATGAC AAGCGACGTCTGTCTGTGGAGTGGGCTAGGGTATGGTAGTATTTTCATGATTATGTTTTACTTTTATGTTCTTATATTGA TGAGATCATCAGAGTAACACAATGTCCTGTCTATGTTCAATAAGAACATTCTGATCTGTTTTTTTTTTGTTTCTGCAGGG TGAACGTGGGCGTAATCGTGATCCCCCAAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAA TTCGTACTAGAGTTCGTGATATAGAAAAGCACTTTGAACCTTATGGCAAGCTTCATCATGTTCGAATTCGTAGGAACTTC GCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTCTAGAGTGTACAAATATGAGGTCAGTGATGAGATTATA ATATTTTGCATAGAAATTCCTGAGTTTTTTTTTTTACTATGTTCAAGTGATGAATTTCTGATCTTGTTGCACTTGCAGTA AGATACTGGACAGGGTGGTGACTGTAGAGTATGCTCTGAGGGATGATAGTGAGAGGGGTGACCATTATGACAGCCCTAGA AGAGGAGGGGGTTATGCAAGGTCGCCTAGTCCAGCTTATCGAAGGCGACCAAGTCCTGATTATGGTCGTCCTCGCAGTCC TGTATATGATAGGTATAATGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGA CCAGGAGTCCTGATTATGGCAGGCCCAGGAGCCCTGTAAATGCTAGATTTCGCAGGTATTGAATTTGAAGCCAGTTAACT ATCTCCTTGAGTTGTGTTCTCTCTATTCTCAGAGCTAATCTACTCTGTTATCTTGTCTGCAGCCGTTCACCTGTAAGGAG GTCAAGAACTTAG
CDS sequence (LotjaGi3g1v0399000.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCGATTTTCGCTGGGAACTTGGAGTATGATACCCGTCAGTCTGAGCTTGAACGCTTGTTCTCCAAGTATGGCAG GATTGAACGCTTGGACATGAAATCTGGTTTTGCTTTTGTCTATTTTGAGGATGAGCGTGATGGTGAAGAAGCAATTCGCG CACTTGACAATATTCCATTTGGTTATGACAAGCGACGTCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTAATCGT GATCCCCCAAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGA TATAGAAAAGCACTTTGAACCTTATGGCAAGCTTCATCATGTTCGAATTCGTAGGAACTTCGCATTTGTGCAGTTTGAAA CACAAGAAGATGCTACCAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGACTGTAGAGTATGCT CTGAGGGATGATAGTGAGAGGGGTGACCATTATGACAGCCCTAGAAGAGGAGGGGGTTATGCAAGGTCGCCTAGTCCAGC TTATCGAAGGCGACCAAGTCCTGATTATGGTCGTCCTCGCAGTCCTGTATATGATAGGTATAATGGACCAGACAGGCGGA GGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGACCAGGAGTCCTGATTATGGCAGGCCCAGGACCGTT CACCTGTAA
Protein sequence (LotjaGi3g1v0399000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPIFAGNLEYDTRQSELERLFSKYGRIERLDMKSGFAFVYFEDERDGEEAIRALDNIPFGYDKRRLSVEWARGERGRNR DPPKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKLHHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVTVEYA LRDDSERGDHYDSPRRGGGYARSPSPAYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRPRSPDYGRTRSPDYGRPRTV HL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 232 | 232 | 2.2E-111 | ||
| PANTHER | 1 | 232 | 232 | 2.2E-111 | – | |
| Gene3D | 1 | 82 | 82 | 3.3E-19 | ||
| ProSiteProfiles | 2 | 74 | 73 | 16.978 | ||
| SUPERFAMILY | 3 | 165 | 163 | 4.12E-34 | ||
| SMART | 3 | 70 | 68 | 7.6E-14 | ||
| Pfam | 4 | 61 | 58 | 3.5E-14 | ||
| Gene3D | 83 | 173 | 91 | 1.4E-19 | ||
| ProSiteProfiles | 91 | 162 | 72 | 14.982 | ||
| SMART | 92 | 158 | 67 | 1.7E-16 | ||
| Pfam | 93 | 155 | 63 | 7.3E-12 | ||
| MobiDBLite | 165 | 242 | 78 | - | – | |
| MobiDBLite | 205 | 242 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of LotjaGi3g1v0399000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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