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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0408800 |
| Transcript ID | LotjaGi3g1v0408800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain-containing protein 4; TAIR: AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein; Swiss-Prot: sp|Q6NQ79|ARID4_ARATH AT-rich interactive domain-containing protein 4; TrEMBL-Plants: tr|I1MK64|I1MK64_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0408800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81227732..81231223) extracted from Lotus japonicus Gifu genome v1.2.
ATATGTTCAAGCATGTTTGCTTGATATTCAAATTAGTAATTAGATGTGTTTTTACTCCTTTCAGATTTTGAGACAGCTAG CACCTGATGTTTCATATCGAAGTTTCGTTGCACTTGGCATCGCCAGTATTCAAGGGTTGCCAATCGCTTCTTTTGAGAAA GAAGATGCTGAGCGCTTACTTTTCTTCTATGAAAGCTGTGAGAAAGATAGCTGTGTAAACAAAAACGATGTTGTTTTCAG CAGTCCACCAGTTTGGTTGAAACCACCCCCTCCTACGAGAAAGAGGTGTGCACCAAGCCAGGGGGCTAGTCCTGGCCTTC ATGATGGCGCCTTTGCTGGGCAGGGTGCTTTTCAAAAAGTAGATGAAGAGGAAAAAGGTAAAAAAATGGTTAATGGGATG AGCACACCCTTAAATCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGCGGCCAATTCCTCATGTTGGTCGCCAAAGAAT GACACCTTTCTGTCGACCTATTGAGACAAATGGTTTTGATGGTGCCCAAGTTGAGCCTATTTTGCCACTTGTTGCCCATA CAAAGCGTAGTGTTGGATCAACATCTGCAACACATAAAAAATCATTTTCTAGCTCAGCTCAGTCTAAGCAAGTTATTTCA TTGAACCCATTACCTTTGAAGAAACATGGCTGTGACAGAGGCCCAGTACAGACCTGCCCTGAGGTGAGTTTTCCTTTATC CATTGTTTTAAATATGGTTTTCAGTGTCATTTCTATGCTTAGGTTGATACTGTAATCTCAAAAGTTCTGCTTGTGCTGAA AATTTGAGTGGTAGTACACTAATGTAATTATCTAAGCTTACATGTGAAATTATTTTTTGGATTAAGTATAACTCTTATGA TTACTTTTTTTTGATAGATATAATTGTGTTCTTAACTTGATTTTTGCATTGTACTCTTAAAGTAGAATCCTCTAAATGCT ACATGAGTTGATGAAAATAGCAACTGTCATTTCTCATTAGAGTAATTTGACTTGATTAACAAATTAAAGACCAAACGGTT ATAGTAGTTTTTTCCAATGTAACTGCACAAAAAAAACGATTATAGTAGTCATGCAATTGCACATGTAAGTGTAACTTAAA TCAATTATATTATTTTGGAAAATGGAAGATCTATGTGGAATCCAAGCAAGGTGGGTGAAATGGAGGATTTCTTCAGGTGT GATTTGGGATAGCAATGACCATTCAGGCTGAAAGGAAAATTTTACCGTACAAGTTTACAACCATAAGATTTGCAATGTTG CATGAGAATGAATATTGGGTACTAAAAGGCAGCAAGAAAGTTAAATCAGTGTCACAGAAATGAGAATGTTACAATGGATG ATTGGATACACAAGAAAATGTAGGATACAAAATACAATTGTTAGAGAGAAAACTGGAATAGCCCTCGTTATAGAAAAAAT GGTAGATTCTCAGGTTAGGTGGTCTAGACATGTAATGAGAAGACCTACAAATGCACCAGTTGAGAGGGTTGACTAGATGG AGGATTGTCCAATAGCTAGAGGTAGAGAGAGACCAAGAAATAATATAAGAGATATTTAGAGGTAAACAGCTTGTCTTTAA ATTTAATATATGACTGAGTTTTATGGTGGGAAAAGGCTCGGATGTTGTTGGAAGAACATCTCTGTAATATATTTGTTTTG ATTCAATGGATTATTATGAAGAGATGAACTCGATCAATTTTATATGTAAATATTCCACCACATTTAACTTAACTCAAAAT TGATATGATAATTTTTAATCTCTATTCTTGAATGATGATAGTTTTTTTCCTTCACATTCTCATTATTCTATTAATAGTTT ATTTAAAGTCATTTTTATAACAAGCTGTCCTAAATATTACTAAATTGACTGGGTTAATCAATATCTCAATGATACTTAAA TTCAATGGGAATCCATATTCCATAAATTGGTAATATCTTTTTTTTTTAACTTAATATTTCCCTATTAATAATGTTTTAGT TCACATTTCAGGATGTTATCCTAAATATTACTAAATCATTCTCATTATGATGCAAATATTCAATGATAAAATATATTTTT AAAAATTCAAATAAAATTTCAATTTTCTGTACAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGAC ACAGTCGACTTATTCCTCAAGGAGGGCTTACTGAGTTCCCTGAGGCCATACTCAATGGAAAACGCCTTGATCTCTACAAC TTGTATAAAGAGGTGAACCAGTGAAACTGTTTTCTTTGAGAATTATTATGGCTGGGGTTTTCTTTGTCATATATTTTATG TCTAAATTTGCTGGCCTTCATAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATC TTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACCGTATGTTTACTCAGATTCATTTATGAGGATTATAGATG AATCTGTTTACTCATTTTGTATGGGCTAAATAAAATACGGGTACCATGTAGCTATATCTATGTTCGTGTTATTATTTGGT CCCCAAGGTTGACCATTACTTGCACCTTCTATAGAAAACCTTCAGCAGAAGCTTAGATGGACACTTTCCTTGTTCTACAG TAATCTGTTTTATTCCTCATCCCGAAAACAAAAATTGATGCACCTTGTTTGCTTGTCTTGGTTAGGGCTTTGAGAGAGGA TTTGGTGTGATTACGGATAATCATGTGATTTGATAATTTCATGGGTTGGCTTTGCCTCTGATGTTGATTCTTCAAAACAT TATTAGGGTACACAATAGAGGAATTGTTTTATGAAGATTTCGAAAAGTTTAAACTGCACCAAAAAGAAGTTCAAAAGCTA ATTCAGATTTTATGTGATCACTAGATGTTTTTTAAATCATGTGAAATTAACTGGCTGCTAATGTATTCTTTTTCTCCCGA TGATGTGTCTTCTTCCACAGGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATACGAATTAGCA CATGATGATGTTGATGGAGAATGCTGCTTGTTGTGTCACAGGTTTGTACCACTTTTTGCTTACATCATCTCATGTTTTGT ATGTTTTCCTCACAATCTTTCACTGTTCAACAGTAGTGCAGCCGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGG CTCACTTTGGCTGTGACAGAAGGCAGGGCCTAGGTGCATTTAAGGTACAAACATCATCACCTGCAATTGTACATTAAAGA GTCTTGATGTCATCTATTGCAAAACAACTTATCTCTTTGCTTTTAAATTGTATTAAGGATTTACTTTTCTCCATTTACAA TTTCTGCAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGCATTACAAATTTCAAGAAAAAACA AAGTGTTACTAATGGGTATTCTCATGGGTCAATGTCATCACGACCCCTTTGA
CDS sequence (LotjaGi3g1v0408800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTTTTACTCCTTTCAGATTTTGAGACAGCTAGCACCTGATGTTTCATATCGAAGTTTCGTTGCACTTGGCATCGC CAGTATTCAAGGGTTGCCAATCGCTTCTTTTGAGAAAGAAGATGCTGAGCGCTTACTTTTCTTCTATGAAAGCTGTGAGA AAGATAGCTGTGTAAACAAAAACGATGTTGTTTTCAGCAGTCCACCAGTTTGGTTGAAACCACCCCCTCCTACGAGAAAG AGGTGTGCACCAAGCCAGGGGGCTAGTCCTGGCCTTCATGATGGCGCCTTTGCTGGGCAGGGTGCTTTTCAAAAAGTAGA TGAAGAGGAAAAAGGTAAAAAAATGGTTAATGGGATGAGCACACCCTTAAATCCAGCTAGGCAGAGATTAAAAGTATCTG CAATGCGGCCAATTCCTCATGTTGGTCGCCAAAGAATGACACCTTTCTGTCGACCTATTGAGACAAATGGTTTTGATGGT GCCCAAGTTGAGCCTATTTTGCCACTTGTTGCCCATACAAAGCGTAGTGTTGGATCAACATCTGCAACACATAAAAAATC ATTTTCTAGCTCAGCTCAGTCTAAGCAAGTTATTTCATTGAACCCATTACCTTTGAAGAAACATGGCTGTGACAGAGGCC CAGTACAGACCTGCCCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACACAGTCGACTTATT CCTCAAGGAGGGCTTACTGAGTTCCCTGAGGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGT GGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAA CAACCAATAGAATGACCGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATACGAATTAGCACAT GATGATGTTGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCCGGGGATTGGGTGAATTGTGGCATATGTGGTGA GTGGGCTCACTTTGGCTGTGACAGAAGGCAGGGCCTAGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATA TATGTCCTCATTGTAGCATTACAAATTTCAAGAAAAAACAAAGTGTTACTAATGGGTATTCTCATGGGTCAATGTCATCA CGACCCCTTTGA
Protein sequence (LotjaGi3g1v0408800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCFYSFQILRQLAPDVSYRSFVALGIASIQGLPIASFEKEDAERLLFFYESCEKDSCVNKNDVVFSSPPVWLKPPPPTRK RCAPSQGASPGLHDGAFAGQGAFQKVDEEEKGKKMVNGMSTPLNPARQRLKVSAMRPIPHVGRQRMTPFCRPIETNGFDG AQVEPILPLVAHTKRSVGSTSATHKKSFSSSAQSKQVISLNPLPLKKHGCDRGPVQTCPEEEFLKDVMEFLILRGHSRLI PQGGLTEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAH DDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQSVTNGYSHGSMSS RPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 393 | 390 | 3.0E-194 | ||
| PANTHER | 4 | 393 | 390 | 3.0E-194 | – | |
| MobiDBLite | 75 | 94 | 20 | - | – | |
| SMART | 214 | 317 | 104 | 2.3E-15 | – | |
| Gene3D | 215 | 318 | 104 | 4.8E-11 | ||
| ProSiteProfiles | 217 | 321 | 105 | 18.794 | ||
| SUPERFAMILY | 217 | 332 | 116 | 6.28E-17 | ||
| SMART | 218 | 322 | 105 | 0.0059 | ||
| CDD | 219 | 317 | 99 | 2.95866E-23 | – | |
| Pfam | 220 | 317 | 98 | 7.8E-15 | ||
| SUPERFAMILY | 313 | 381 | 69 | 2.15E-8 | ||
| Gene3D | 319 | 387 | 69 | 5.1E-6 | ||
| CDD | 327 | 378 | 52 | 1.67887E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0408800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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