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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0411600 |
| Transcript ID | LotjaGi3g1v0411600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FLUORESCENT IN BLUE LIGHT, chloroplastic; TAIR: AT3G14110.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic; TrEMBL-Plants: tr|I3SLI0|I3SLI0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0411600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81555512..81558052) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGTTGTAATCCAGCGACAGCACACAAAACAAAACAGGGATTGCAGCTATCTATCCCAACGTTTATCCTCTCAGCTTC TCTGTAGATGATAGCAATGGCGGTTCTGGTTCGTTGCTCCTGCTTCCTCTCTCGTCCTCACTTCCCTCAACCTCAATTCT CCGCCAACAACACCATGCTCCACCTTCCCGGTCAGTTTTCACCCACCATTTTCTCTCATTTCCTCTTTGTTACTAGGGAA ACTATAGTCAAATTGTTAGTATCTTTTTTTTTTTATCAACAACCCCAGATTTTAATTTGGTTATACACTTATACTAACTG ATTAAAAGGAATGTTTTTGGAAAAAAAATCATGATTTCAACTTTTGGGTCATTTACTTACTCATTAGCCTAGCTGTGTAT CAAAATAATGAAAATGTGTGGTTTAATTTGTAAGACAGTGATACTCACTTGGGATTGAACTTCTTGAATGAATCAGGAAA ACTGGCTTGTCTTTCTTTCAAAGCTGACAACTTTGTGCCAATCTTTAAAGATACTTCTGATGGGTCTTCTAAAATTCCAA GTATGCTGCACTGCTCAAAGTGTAAGGTATGATGGTGAGTCACGGTATTCCTACCGCAATGCGCAGCCCTTTGATGTTGT ATCATGGTTTATGTACTTGTAAGTTTTATAGTGAAATATGGAAGTTTTATGATCCCTTGTTTAAGCTCCTGCTTTGGAAA TTGTTAAGTGTAGGTGTGCTGCCTATAGGTTGTGAAATTGTTCATTTTCAGCTGCTATTCTCCTAGAAAATCATGGTTTT GGCAGATTTTTCTGTAATTTTTCTCTTCTGATTGAATTTGTTTGCTTTGCCAGGAAGATATACACCAAAAGTTTCCGTCA TTAACATTTCTTGCAAGCAATATTTTGATGTTCACCATGCCTTCTAAAGCTTTGGCCGAAACATGTGAGGCGGCTGATAA CTCTTTTTTCAATATGCCTATACTGCTTGCAGTAGCCCTTATTGGAGCCACAGTAGGAGGTAAGGTACTCTAAGATTTCT TGGACAGTTATATAACTTATATTAGCTCATGACTGTTTCTGAATCCAAGGGTTTGGAGTGTAGAACTTCATTTTGTTGTA ATGCATTTTTTTGTAGAATGGATTTTTAGTCCTCAATTCAGTTCATCTGTTATATAATAAACCAGTGGCATATCACTAAA ATATATGTTGTCCACACGCTACAACCCAAAATTTTACAATACTATCTCAATTAAATTCAGTCTTTGTTTCTGTAATATGA TTGGGTTTTTTTCATCCCTCGCGGCTCCTGAGCTAGATGCAAACTAAATTTAGTAGAAAACCAGAGAATAGAAAGCCAAA CACATATACGACAGTTACTGCAATTAATATCTGTCTTCTGTGTATCATAAGTTAAATATCTGTGGCTTTAAAGTGTGGTA GATGCATTTCATATGTATATCTATGGCTAAGGGATACACTGTCTTTTTCCTGAATTCTTCTATCGGATGACAGGGTTGGT TGCTCGACAAAGGAAAGGAGAGTTACAGCGGGTAAATGAGCAACTGCTCCAGATCAATACAGCTTTAAGGAAGCAAGCCA AAATTGAGTCCTATGCCCCTAGCTTGAGTTATGCTCCAATTGGTGCTAGGATACCTGATAATGAAATCATTGTTGACCCA AAGAAGCAGGAGCTAATTTCTAAGTTGAAAAGTGGAAAGAACTTTCTAAGGAATCAACAGCTAGATAAAGCATTCACGGA GTTTAAGATTGCGCTTGAGCTTGCGCAGAATCTGAAGGATCCTATTGAGGAGAAAAAAGCTGCTAGAGGGCTAGGTTTGT CATCTTCCCTATTTTGCTTATTAATATGTGTTTTCTGATAGGCTCCCATACAATTACATTAGCTTTTGTGTGTTATAAAT GAGTGAAACTTTTATAAGGAGACCATGAGTACAGTTTAAATATTGCATATACAGGGGCCTCACTACAAAGACAGGGAAAG TACCGAGATGCTATTAAATACCATTCCATGGTTTTGGCCATCTCTGGAAGGGAAGGAGAGGACTCTGGAAACTCAGAAGC TTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGACCTTGAGAAAGCAGGGGAATACTATGACAAGTATATTGCAA TGCTGGAAAAGGACTAATCCTGAATGTACAACATTTTTAGAAAGAAGTAATCGGTTAGAACTACTAGAGTTTGCTCATAG CTTGTCATAATCGGTTTCATGCGGATTCCTCCCCCCCCATTTCATTTTTTGAGTTAACTATCTATTTATATTAAGCTATT ATTGTGATTGTAGAGTTGATATTACACCTCCTTTAAGGGAGAGGTTAAAATTGAAGGATGGAGATAGTTCTATCTTCAGT CCCTAGTTTGCTGAGAGGGGTATTACTGAAAGATATCACCTATTTTACTTTAGCTGCTGAATGATTTTAATCGCATCCAT GGTTCCAAACGTTATATGTGAAACTGGTTTAAATAGTACATTATTGATTTACTTTAGAAAA
CDS sequence (LotjaGi3g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGCAATGGCGGTTCTGGTTCGTTGCTCCTGCTTCCTCTCTCGTCCTCACTTCCCTCAACCTCAATTCTCCGCCAA CAACACCATGCTCCACCTTCCCGGAAAACTGGCTTGTCTTTCTTTCAAAGCTGACAACTTTGTGCCAATCTTTAAAGATA CTTCTGATGGGTCTTCTAAAATTCCAAGTATGCTGCACTGCTCAAAGTGTAAGGAAGATATACACCAAAAGTTTCCGTCA TTAACATTTCTTGCAAGCAATATTTTGATGTTCACCATGCCTTCTAAAGCTTTGGCCGAAACATGTGAGGCGGCTGATAA CTCTTTTTTCAATATGCCTATACTGCTTGCAGTAGCCCTTATTGGAGCCACAGTAGGAGGGTTGGTTGCTCGACAAAGGA AAGGAGAGTTACAGCGGGTAAATGAGCAACTGCTCCAGATCAATACAGCTTTAAGGAAGCAAGCCAAAATTGAGTCCTAT GCCCCTAGCTTGAGTTATGCTCCAATTGGTGCTAGGATACCTGATAATGAAATCATTGTTGACCCAAAGAAGCAGGAGCT AATTTCTAAGTTGAAAAGTGGAAAGAACTTTCTAAGGAATCAACAGCTAGATAAAGCATTCACGGAGTTTAAGATTGCGC TTGAGCTTGCGCAGAATCTGAAGGATCCTATTGAGGAGAAAAAAGCTGCTAGAGGGCTAGGGGCCTCACTACAAAGACAG GGAAAGTACCGAGATGCTATTAAATACCATTCCATGGTTTTGGCCATCTCTGGAAGGGAAGGAGAGGACTCTGGAAACTC AGAAGCTTTTGGGGCAATTGCTGATTGTTACACTGAGCTTGGAGACCTTGAGAAAGCAGGGGAATACTATGACAAGTATA TTGCAATGCTGGAAAAGGACTAA
Protein sequence (LotjaGi3g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIAMAVLVRCSCFLSRPHFPQPQFSANNTMLHLPGKLACLSFKADNFVPIFKDTSDGSSKIPSMLHCSKCKEDIHQKFPS LTFLASNILMFTMPSKALAETCEAADNSFFNMPILLAVALIGATVGGLVARQRKGELQRVNEQLLQINTALRKQAKIESY APSLSYAPIGARIPDNEIIVDPKKQELISKLKSGKNFLRNQQLDKAFTEFKIALELAQNLKDPIEEKKAARGLGASLQRQ GKYRDAIKYHSMVLAISGREGEDSGNSEAFGAIADCYTELGDLEKAGEYYDKYIAMLEKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 77 | 77 | - | – | |
| PANTHER | 4 | 300 | 297 | 1.4E-131 | – | |
| PANTHER | 4 | 300 | 297 | 1.4E-131 | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 109 | 130 | 22 | - | – | |
| Phobius | 131 | 300 | 170 | - | – | |
| Gene3D | 182 | 300 | 119 | 1.7E-28 | ||
| ProSiteProfiles | 187 | 300 | 114 | 12.36 | ||
| SUPERFAMILY | 194 | 298 | 105 | 1.38E-16 | ||
| Pfam | 230 | 299 | 70 | 7.7E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0411600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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