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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0412300 |
| Transcript ID | LotjaGi3g1v0412300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein; TAIR: AT3G14080.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B; TrEMBL-Plants: tr|A0A0B2P1D2|A0A0B2P1D2_GLYSO U6 snRNA-associated Sm-like protein LSm1; Found in the gene: LotjaGi3g1v0412300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81651156..81655809) extracted from Lotus japonicus Gifu genome v1.2.
GACACAAGCCTAACTATGAATGAGTATTGAGTAAGTATATTTGAGCACACAACACAAACCCCAATCAATGCTGCTTCACC ATCTCAAATCCTAGTCTCATAACCCTAGAAAATTGAAGGAAAAAAAAAACCCCTTTCTTTCTCCTTCCCACATTTTCCAC CACATTCGATTTCAAAGACTCTCACTTTCCTCTCTTCTGCTGCGATTGGATCTCAGGTTTTTGGCTATTTTTTAAAACCA ATTACTTCCATTTGTCTCTAAGAGACACCCCTTTTGGTCAATTTCTGAGATTTCGATCTCAAAGTGTGCTAGGTTCAGTG AATTTTCAGAAAGTTTGGTTTTTTTTTTCTTCAAAAAGGGGGATTTTTTATTGTGGAATTGGGAATTAATCTTGAGGAGT TGAATTGGTGCTGGCAATGCCATTGGTGTGGAATTTTTGAGATACCCAGAAAGCATCATGTCTTGGGCAGGCCCTGAGGA TATCTACCTTTCTACTTCACTTGCTAGTTATCTTGATAGTGAGACCCCTTTCCCTCTCTCTCTCTCTCTCTCATTGCATA TTGAGATGCACTTGAAATTTATAGTTGCAGAAATTTTGGATAATTGTTATTTTGATTTTCTGGTGTGAATGATTTTTACT ACCAAAAGTTGTGAACTTGGTTGGACTAGACTAAGATGTCAGGGAAGGGGATTTTATTTATTTTGTGTGTTTCAACTTGT TCCCTATTTCTGATAGAAGCTGGTGATTCAATTTTCATTAACAATCCTAGGTTGGGCTTTTACATGTTAGTTTAGCTTGA ATTGTTTTAATCATAATCATGCTGTGGGGGGAGGGAAGGGGCGCGGTTTCCACCTATTGTAGATGAGTAGTGTGTATTTT TTTTACTAGCTGTTCGTATAAAAGCGGCCCAACATGTTGTTAGGAAACTGAGCTGTGACAAATAGCTTAAATGTGGTTCT GAAATGATGATAGTCACATACATCTGTGTCCTCCACTGTTTTTCTTTGTGGTGTGCATTGAGTTGTTTTCCAGTCTTTGA TCCTAGTTGTGGCTGTTTTCCCATTAACCTTTAACATATTTCCTCTCAAGTTGTTGTACCTCTTCATGCTAGAAAACTTA AGTAGTTCCTGCAAAAGTAAATGCTTAAAAATGCACTATTATCAAATATCAACTATCGTATGTTATGGTGCGCTAAAGAT TCAAATGATTTTGCTTATTATGATTTATGTGAATGAATGGTCTTGATGTTATATCAACTTTAGCATATCTAGCACACGAG CCTTTCTGAAATGGATTTTGTCTATATATTGTTCAAAATCAATGAAAACCAGTTCCAAGTGGTAAATTAGTCTAGGTTCT CAATGGAGGTGAAAGTGATTTCTGTATTTCGTACCAAATTTTATGATCTGACACTCTTTGTTGTTGTAGAGAAACTTCTT GTATTGCTGAGAGATGGGAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGGTAAAAATTCCTCAAATTATAT TAAGATTTGACAAGCTATTGGATGACGTTCTAAAAATTCCTATCAATAATATGCAGCTAATGCCGTTCTCGAGGGTGCCT GTGAGAGGGTTATTGTTGGTGACCTGTATTGTGACATCCCATTGGGCCTTTATGTAATTCGTGGGGAGAATGTTGTTCTC ATTGGTGAACTGGTATGATTATTTCCCTTTGCGTCTAAAAATATTTCTACTTTTCAATTTCTGTTTTATAATCAAGTATC CTTCAACTTTTAGGACTTGGAGAGGGAGGAACTCCCCCCACATATGGTGCGTGTTTCCACAGCAGAAATTAAGAGGGTAA ATATTCCTAGATTGATGCCTCTTTATTTAATTGATGTTCTTTATGTCTATTTTCTGCCAAGTTGTTTTGTCCTCATTCCA CTGAAAATAATACTATGTTGCGACCTGAACTTTCATTGTCAAAGTGCCCCCATTGTTGTCATAATCTTATTTTTCCTCCT TTTGTTTACAAACCTTCATTACATGATGAACATATAAAGGACTTATGATTGAAACAGATTTACAGGGCCTTGAGAGTAGT TAGTTAGAATAGTTATGTTTGGGTGGTTAAAGTGTTAGAGCCAGGGAATCAGCTTATATAAGAGGGAGAAGAGACGGCAT TGTGATTTGTTATCATTTGCAACCTGGTCTCCGAAGGTTAGCTCAAGTGGTAAGAGCTAGGGGACATAAGGGTTTGGGAG GGTAAAGGGTAAAGGGTCCAGGGTTCGAACCCTGAGGAGGACTAATTTACTAACATTATTAACAACTAACATTTGCCTAT AAAAAACAATCATTTGCAACCTGAGCATTGGCTCTGTTGTATGGATTGGAGTGTTTAACTATTCTGATTATTGGTCAACA GCTTCTAAGTATGCACACTGGGGTTTCATAATTATGCAGAAAAATGTCTCAAATATTTACAGTGACGATCTATATATTAG AGCCAAATAACTAAACAATTTATTAAGATAATCCAAAATAGGGTAAAATCCCTAGATAAATAATCCCAATCATATTGAAA ACCCTACTTTAAAAATTAAATTCCTCAAACAAAATCCTAAACTACTTGCCCATTTTACGCCACTGACATAAAAGTAGTAG TGTTTTCAGAACCGGACCGGTCATTGAACCGGTTGAGGCACCAATGCTCGATGGTCAGATCATGGTCGAACTATGGTCGA GTGGGTGATAATTCAATAATATTATATATATATATATATATATGTGTGTGTGTGTGTGTATTATAGCTAAAAATATAGAT TAATAAATATTAATAAAATATTAACATTAATAAGCAAGTGATGTTTTTTTGTTATTGTCTAGCACGTGATAGTTAAAGGT AATGTTACCCCCCACTAGGTGATATTTCTATGATACTATTATCGTTCTAAAATTGTAGGTGATATTTTCTTTTGAGTTAA TCATCTACTTGGTCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTTCCTCCCCGGAAAATCTGAAAATCTAAGTCCTCGTG TTTGGAAAGCGTGTGGAAATTAGTCCCTCCGGCGAGGACCTCGGCGAGGACCTGCTCCACACACTTTCCAAAACACGAGG ACTTAGATTTTCAGATTTTCCGGGGAGGAACTAATTTCAGACGGCCACACAACCACAGGGACCAAGTAGAGGATTAACCC TTTTCTTTTTTTGGTCAAAAGATGGTACTAAAAAACATTAAAAAACAAAAGTTCATTCTATTTGGATTTAAATTGTAAAG TTCATCATTAGAATAATGTTTCATGCCATTAATATATAACCGGAACATATTTTTGGTTATATATTAATGGCATGAAACTC CAATTCAGTGATGGGGCTTACCACTTTAAGCCCAAATAGAATGAGAATTTTTTTTAGTGTTTTTAAGCATCATTTTTTAA ACAAAAAAAATACAATCATCTGCTTATGCATCCAGAATTTCTACAATTTGAAAAACAAAAATTAGTATCCCGAAACTATC TCCTTGTGAGGGTACCTGAATAAAAACATCACCTGCGTATTAATGTTACTACTTTATGAACCTATATTTTTTTTAACTAC ATAATGTATATTTTAAAATGTTATTTAATTATCATTGGTCCAACCAGCGAACCTTGAACCGGTGTTTCAAACGATTCAAT GACTTGTCCGGTTCTGAAAACATTAAATCCTTATGGTTGAAGTGTTTGACATTTTCATTTTTCTGTTGTGATTTGGAATT AGTTGCTTATGGTCCTATAAATTTTTTATTTAAGCAATAATTCAATTTTTTATACTTTTGCTAAATTTTGTATTTTTCAC TGTAAATGTGATTTTGTAGGCACAGAAAGCAGAAAGGGATGCTTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAAT TCCTTGACTTGGACTAGTGAACTATTCTCTCACTCATCTTTCACCTCCCATTGCAAATATTGTAGCACCTGTTCTTAAGT TATTTTATTTATTTTTACATGCTATTGTCAGCTTTCATGGGAAGGATGAACGCTGTTGAAATTTCTTGTGTATTATTAGC CTGAGGAATCAATACATTAATTTTCTTTCTTTTCTTCTCCAAACAATTGTCAATTAATATGGCATGGTTTCTGTTCATAA ATGACATTCTGAATCTGATTTGGAAATGAAAGGGTCCTAATTATGCAGAATAGATTTGCTGTGCCTGTAAAGTGGCGGAC CTACCAGTGGTAGGTCCAATGCCCTGTCTCAAAGTAAAAAAAATACAAATTTCTTTGGACTAGGTAGGTTTTTTGGCCAA AAAAAAAATTAGAGAAAAGACAAATTTATAAGAAAATGTAAAGTTTAGGAACTTAATCATAAAATTTGCCTGGCTTCCTA AAATTTCTAGTTCCGCCACTTCCTGTAAGCCACTTCCTGTAAGCCTAATGTTTTTGCAACTTCAACATTCACCAGGGGTA TAAATACAATACAAAGTTTCATTTGATACACTTGAATATTTTCATTTCATGTGTCAGAAATTCAAGAGTTAGAGAATTTG CAATTAAAACAGTGGCATGTAAGCTGTGTAAGCCATGCTGAAGTTCTGATCAACAAGATCACATATCAAATCAAATTAGT GATCCTATGTAGGA
CDS sequence (LotjaGi3g1v0412300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGGGCAGGCCCTGAGGATATCTACCTTTCTACTTCACTTGCTAGTTATCTTGATAAGAAACTTCTTGTATTGCT GAGAGATGGGAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCCGTTCTCGAGGGTGCCTGTGAGA GGGTTATTGTTGGTGACCTGTATTGTGACATCCCATTGGGCCTTTATGTAATTCGTGGGGAGAATGTTGTTCTCATTGGT GAACTGGACTTGGAGAGGGAGGAACTCCCCCCACATATGGTGCGTGTTTCCACAGCAGAAATTAAGAGGGCACAGAAAGC AGAAAGGGATGCTTCAGATCTGAAAGGGACTATGAGAAAAAGAATGGAATTCCTTGACTTGGACTAG
Protein sequence (LotjaGi3g1v0412300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG ELDLEREELPPHMVRVSTAEIKRAQKAERDASDLKGTMRKRMEFLDLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 128 | 128 | 9.1E-76 | – | |
| PANTHER | 1 | 128 | 128 | 9.1E-76 | – | |
| Gene3D | 12 | 125 | 114 | 4.4E-33 | – | |
| CDD | 12 | 82 | 71 | 3.52256E-40 | ||
| SMART | 13 | 81 | 69 | 1.1E-21 | ||
| SUPERFAMILY | 13 | 83 | 71 | 2.45E-19 | ||
| Pfam | 14 | 80 | 67 | 3.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. |
Expression pattern of LotjaGi3g1v0412300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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