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LotjaGi3g1v0414000.1

Overview

Field Value
Gene ID LotjaGi3g1v0414000
Transcript ID LotjaGi3g1v0414000.1
Lotus japonicus genome version Gifu v1.2
Description Kinase family protein; TAIR: AT2G05940.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9ZUF4|RIPK_ARATH Serine/threonine-protein kinase RIPK; TrEMBL-Plants: tr|G7L7J3|G7L7J3_MEDTR Receptor-like kinase; Found in the gene: LotjaGi3g1v0414000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:81900461..81903090) extracted from Lotus japonicus Gifu genome v1.2.

CAGGTGTAGAATTTTATTGATATCACTGGCCTACACGGAGGAGAAGAAAATAAGTAAATAATGGTACATCAAATAAGGCT TTTTCAGGTTCCTTTGTCAAAGTCCTTACAAAATTACCCCACAAAAATTTGAAGTCTTGGTATTGTAACCTATAAAAGCA TATCCCTCTAAACTAATTTTGCAGATACTGATAAAGCTGTAACTTTTGAGAAACTCACATATATACAGCTTATCAGGAAA AATGCCCTCAAAGAAGCTTCAATGGAGATCATTGGTACTTGGCTGTTTTAAGGACAACAACTCATCCTTAGAAACCCCAA AAATAGTTTCCAAAAAGACATCTTCTACTAGACTCTCCCTCTCTGATGTAAGCAATTATTCATCACTCTCCATCATGAGT GATTTATCCAATTCTCTTGTGGGATCAAATCTTCAGATTTTCACTTATCAGCAGCTCAAAGAGGTCACACACAGCTTCAA CAAATCCAATTTTCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGGTTCATTGATGACAAGCTTACACTTGTTCCTA GGACAGTAGCAGTTAAGGCCTTAAATTTGGATGGAAAACAAGGCCATAGGGAGTGGTTGGTGAGAATTGCTAAAAACCTT TCAATATAGCTATGCATCTTGTTCTGTTTTTTTCCAGTGATGAAATTGTCTAATTTCTTTTTGCACTGCACAGGCTGAAG TAGTCTTTCTGGGGCAGTTGAAGCATCGTCATCTGGTCAATTTAATTGGCTATTGCTGTGAAGATGAGCACAGGCTTCTT GTGTATGAATACATGGAGAGAGGCAATCTAGAGGAAAAGCTTTTCAAAGGTGCATGCATGTTTTTCTCTAAATTGGCTCT CATTATGAAAGAAAAGGGGGAAAAATTGAAACAAGAGCCAAATTTTCTTACAAAAGACTGTTATTGTTCTAAAATGCAGG TTATTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAAGGACTTGCTTTCCTTCATGAAG AAGAGAAGCCAGTCATATACAGAGATGTTAAAGCCTCAAACATTCTTCTGGATGCTGTAAGTCCTCAGTCATTAACCTTT GTTTCCTCAATTGAGCATCATACGTGTTTGTATTTCTAACAGCGCACGTTCCAAGGCAGTTTGAATGTGCTTTTGGTCAA TTTGAACGTAAATACAAACACACAGTAACTAAAAGCAACGCAAACTAACATGTGTATGCTCTTTATGTTTCTTTTTTCAG GATTTCAATGCCAAGCTCTCTGATTTTGGTTTAGCAATAGATGGACCAGATAAAGATCATACACACATTACAACTCGTGT AATGGGAACCCAAGGTTATGCTGCTCCTGAGTATATCATGTCAGGTATTCTTCTCAAAATTAACCAATTTCAAACCAGTT CCTTTAGTGCATGTTTGGATAATTGGATACATAGTAGATTTTCACATGGGAAGAAAAATTCATTACTCCTGATAGTTTTT GCCGGAACAGAATTGATTCGAGAATATCTAAACGTGAATTCAAACATGCTATTTAGTTTCATTCATTGAAAACTTTCTTC AGTTGACTCAATATACCCTCTATTTCCTCTTTAATCAGGCCGTTTGACAACCATGAGCGATGTGTATAGCTTTGGAGTGG TTCTCTTAGAGCTTCTCACAGGAAGAAAATCTGTGGACAAGAAACGACCCACTAGGGAACAAGATTTGGTAGAGTGGGCA AGGCCTCTATTGAAAGATCACTATAAGCTTGAAAGAATAATGGACCCAAGGCTTGAGGATCAGTACTCAATTGAAGGGGC TAGAAAATTTGCAGCTTTGGCTCATCAATGTCTAAGCCTTCATGATAAGAGCAGGCCCACCATGAGAACCGTGGTTAAGA GCTTAGAGCCGTTGTTGAAACTGAATGATATCCCTATTGGCCATTTTGTTTATGTGGTTCCAAGTGAAGAAGGTTCAGTA GAAGTGAATGGAAAAGGAGTGGAAAATGACCGTGATGCGATCAATAAAGGCGTGGTGAAGGTTAAAGAAGAAGAGAATGA AGAGAAAAATGAGAAGGGTCACAACCGGCGTCGTCGAAAAAGTCGTGGCAGTAGACGCAGGGTTAAGCCTTTGAGGTCTC ATGCTGTTCACTCTGATACTGCTCTGTATAAAACTCTTGGTACCAGTTTGTATTCTCCCAAGCAAGCAGCAGAAATAAAT GGACATGGCGAATATTAGCTTGATTTCGTGCATACCGGCCTAAGTCAAAATCACAATGGACAGAAGTAACACTAAGGAAA ATTGACTCTATCAACCGCGAAACCGAACGAATTTCTAAACATGTACTGAGGAATGGAATTCTCCTTGATGTAATCATAGT TAAAGTTAGGAAAAAGAAAAATTAGACATAGGATGTACATGCATCATACAGTTCTTGTTTTTGTTTGTTTGTTTGATTTT GATGTTTGATTTTTTAAAATTTCAGCATGTTTTAGGTGACTGATGTTACATACACCTAAGTATACTTACCACATACTTAT TTCAAAGCTATTATGCAGTTTAAACGTTACACACATTTCACATTCAGATTATTATGATGTTTGTTTAATA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0414000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCCTCAAAGAAGCTTCAATGGAGATCATTGGTACTTGGCTGTTTTAAGGACAACAACTCATCCTTAGAAACCCCAAA AATAGTTTCCAAAAAGACATCTTCTACTAGACTCTCCCTCTCTGATGTAAGCAATTATTCATCACTCTCCATCATGAGTG ATTTATCCAATTCTCTTGTGGGATCAAATCTTCAGATTTTCACTTATCAGCAGCTCAAAGAGGTCACACACAGCTTCAAC AAATCCAATTTTCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGGTTCATTGATGACAAGCTTACACTTGTTCCTAG GACAGTAGCAGTTAAGGCCTTAAATTTGGATGGAAAACAAGGCCATAGGGAGTGGTTGGCTGAAGTAGTCTTTCTGGGGC AGTTGAAGCATCGTCATCTGGTCAATTTAATTGGCTATTGCTGTGAAGATGAGCACAGGCTTCTTGTGTATGAATACATG GAGAGAGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTATTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAAT TGGGGCTGCAAAAGGACTTGCTTTCCTTCATGAAGAAGAGAAGCCAGTCATATACAGAGATGTTAAAGCCTCAAACATTC TTCTGGATGCTGATTTCAATGCCAAGCTCTCTGATTTTGGTTTAGCAATAGATGGACCAGATAAAGATCATACACACATT ACAACTCGTGTAATGGGAACCCAAGGTTATGCTGCTCCTGAGTATATCATGTCAGGCCGTTTGACAACCATGAGCGATGT GTATAGCTTTGGAGTGGTTCTCTTAGAGCTTCTCACAGGAAGAAAATCTGTGGACAAGAAACGACCCACTAGGGAACAAG ATTTGGTAGAGTGGGCAAGGCCTCTATTGAAAGATCACTATAAGCTTGAAAGAATAATGGACCCAAGGCTTGAGGATCAG TACTCAATTGAAGGGGCTAGAAAATTTGCAGCTTTGGCTCATCAATGTCTAAGCCTTCATGATAAGAGCAGGCCCACCAT GAGAACCGTGGTTAAGAGCTTAGAGCCGTTGTTGAAACTGAATGATATCCCTATTGGCCATTTTGTTTATGTGGTTCCAA GTGAAGAAGGTTCAGTAGAAGTGAATGGAAAAGGAGTGGAAAATGACCGTGATGCGATCAATAAAGGCGTGGTGAAGGTT AAAGAAGAAGAGAATGAAGAGAAAAATGAGAAGGGTCACAACCGGCGTCGTCGAAAAAGTCGTGGCAGTAGACGCAGGGT TAAGCCTTTGAGGTCTCATGCTGTTCACTCTGATACTGCTCTGTATAAAACTCTTGGTACCAGTTTGTATTCTCCCAAGC AAGCAGCAGAAATAAATGGACATGGCGAATATTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0414000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPSKKLQWRSLVLGCFKDNNSSLETPKIVSKKTSSTRLSLSDVSNYSSLSIMSDLSNSLVGSNLQIFTYQQLKEVTHSFN KSNFLGEGGFGKVYKGFIDDKLTLVPRTVAVKALNLDGKQGHREWLAEVVFLGQLKHRHLVNLIGYCCEDEHRLLVYEYM ERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADFNAKLSDFGLAIDGPDKDHTHI TTRVMGTQGYAAPEYIMSGRLTTMSDVYSFGVVLLELLTGRKSVDKKRPTREQDLVEWARPLLKDHYKLERIMDPRLEDQ YSIEGARKFAALAHQCLSLHDKSRPTMRTVVKSLEPLLKLNDIPIGHFVYVVPSEEGSVEVNGKGVENDRDAINKGVVKV KEEENEEKNEKGHNRRRRKSRGSRRRVKPLRSHAVHSDTALYKTLGTSLYSPKQAAEINGHGEY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45621:SF107
6 413 408 5.0E-191 –
PANTHER
PTHR45621
6 413 408 5.0E-191 –
Gene3D
G3DSA:3.30.200.20
41 159 119 1.7E-33 –
SUPERFAMILY
SSF56112
54 354 301 3.81E-79
IPR011009
ProSiteProfiles
PS50011
79 358 280 36.994
IPR000719
SMART
SM00220
79 358 280 1.3E-32
IPR000719
Pfam
PF07714
82 354 273 2.0E-46
IPR001245
CDD
cd14066
85 357 273 7.97711E-94 –
ProSitePatterns
PS00107
85 112 28 -
IPR017441
Gene3D
G3DSA:1.10.510.10
160 363 204 1.1E-58 –
ProSitePatterns
PS00108
203 215 13 -
IPR008271
MobiDBLite
mobidb-lite
403 435 33 - –
MobiDBLite
mobidb-lite
414 431 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0414000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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