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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0414300 |
| Transcript ID | LotjaGi3g1v0414300.2 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 Ubiquitin ligase; TAIR: AT1G54150.1 E3 Ubiquitin ligase family protein; Swiss-Prot: sp|Q9SYH3|SPL2P_ARATH E3 ubiquitin-protein ligase SPL2; TrEMBL-Plants: tr|A0A151S6Q2|A0A151S6Q2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0414300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:81955749..81959758) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTTCACAAGAGCAAGCACTAGTCTCCCTTCTCTCCCAACTAGCCCTATCCTTCGACGGCGCCGTTTTGGGTTTAGC CATAGCCTACGCCGCCGTCCGCACCATCGTCAAATTCACCGCCACCTCCGCCGCCCTTCGCAAGATCAACCACGCCCCTT CCCTCTCCGTCTCCGACCTCCGCTCGCTCCTCACCGACGACGACGATGGCAAAATCGTTATTGTCCGCGGCACCGTTGAC GCCAAGGCCGCCGTCGACGGCAGCTGGAAAACCTTCCGCCCCGGCGTCTTGGTTTCACGTGAGACCGGTGACAGAGGTGT CATCCTTCAAAGAACTGAAACGGTAACTGTTCTTCAACTTGTTCGTCTTGGTTTGGCTCACAATTGTTGAGATTATCGTG CGATTGAACACAGGGAGGGTTTTTCGGGGTTCATAATTCACCATTTTTGTGGTTTGGTTGGAAATTTTGGGATTGTGTTT TAACACTATTTAGGTTTTAGGGTTTAATGTGTTAAGTGGAAAATTGGAAATTGTGGAATGAAAATCATTTTACACTTGAT TCAAAATAATTGGAAAGTAAACCAGAAACTGTTTTAACCCTGCTCCACAACTTTGGTTAAAATTAATTTTCAGTTAGCTC ACCCTATGCCTCATTGATTGATTTCGCTTTTCGCTGGATACAGTATAATGGCTAATGATACTTCACTGGTCTGAGCTTGT TTGTTTTGTTTTAGTACTAATCTTCTATGATGGAGTGGGAGAAAATGGGTAGGTAATGAACACTAAAGATATTTGTAATT TGAATAATTAATCTTGTTTAATTGTTTAAATGATATTTGGCCATCCGTTAGGCATTATGGTTTTCATGTCTTAGACACGT AAATTTTTTATTGTCGTTTGAATTTGATTCCGACTCAAATGTCATGCTATCTAATTGTGATTTACAAGAATAATGTTTTA ATTTTCTTTTTATTGTTATGAAGTGTATATACAATGAATGGAAGGGCTTGTTTGGGTGGACTTCTGATCTTCGAGCCATT GTTACAAGATCGTGGAGACAGCAAGAGTCTACATCCTTAAGAAAGGTACTCCCTAACTTTGGTACATATTGGGTATAATC TTATCAAGGTGTTTGAGTTTGATGGGATAAAATTTGATGTTTTGAGTAGTGTAAAAGTCACCATACTTTACAACAATGAG GAAGTTTCTGTCTCATCCTGTGCAGTACATGTGGGGGCATGCTCGGATATCCCTATTATATTTGTTTACATCCATAATTA ATCGATGGTTTAAATAATATATAACTTGCAATCCCTTGTTGCATAAATTGGTGCACCATGGGTATTCTTCAGCTGAGGGT AGCCAAGGTCAGTAAAATCAACCAAATTTTTTTAGAAGGATCTGATCTCAGTTGTAATGGTTAGAGGGTGAGCTGATACA AAGTAATGTTATTTTTATGACTCCAAATCTTAATCAGATAATGGAGAAAATTTTGAAGTACTGAAATCACTTCTAATAGT TCGTCTGATACTCTAAAATGTTCTAAGGTATAATGAATATTATGAAATATTTTTAACATATTTTAATCCTCCCCTCAAAA TAATACATACTAAGCTTAAATTTGTTATAAATTTAAAAATTAAAATACAAGAAGATAAACTCAAAGGTAGAAATATGATG TAATGGCAAACAACAACGCTTAGGATTGGAGATGTAACATTATCATTCTCAAAATAACCAGGGCTAGTGTAAGTCACAGT CAATATTCCGTCAAAATAATCATCTATGGGAAGAAAGACCACCATTGGGACAATTGTAAATGGATTGTTGGATGATCAAT TTGCTGGAAAATCTAAATATAGAGATGTAACATTATCATTTTCACCCTCCCCCTCATTGCCATGCTGGCATTGAAGAACC AATAATAATAATATAATGCCAAAAGGGAAGAGTGCAAAAGTAGAGATTTATTAAGAACCTGAATGGGGGGGGGGGGGGGA CAAACACTCTACCCCGCAAAAAAAGTTGAGAAAAAGCTGGACTAGACCTGAAAACACAAAGGATAGGCTAGGAGATGATC ATACTGAGAACACAACCAAAATCCTTTGGAGGGCGTGGACCAAGATGGCAATATTGGATGTGTAACAAGAGGGAGCAGGC CACAAAGGAAGACACCACTTTGATATCTTGTTAAATTAAAGGGATCTAACTCTGAGTAATAATATTCAATATTGATCTAT GATGTATAGTGATGAGTTAGAAAATACAAAATTGTAAGTCCTATTTATACTTGTAAGAAACTTCTAACTGTAATCAATTA ACGAAACAAATTGTGATATATTGAAACTACTCCTGAAAAGTCCTTTAAGATACACTAGAATATTCTAAGATACAATAATG GCAATTTTTTTTTCTTGATATTCTAATTATATTCTTAATCTAGGTGCCTTTTGTTCTCATTGATGTTGGCCGGCAGCCAT ATCCCGAGTATGTGGTTGTCAACTTGGATGGCTCAAGACACCCATTACCTCTGATAACAGTTTATCATAAATTGCAACCC ATAAGTCCGTCTCCTTATTCATTCTTACAGGCACTCTTTGGGCATGAGTATCCGGTAAGTTAATATTCCCTATTCTTTTT TGCAACAATATGGACTTATGTTCAAACTCTATACCTGTGCTATTTTACTCATCATTCTTTTTGGAGTTTCTTCTTTCTGG CCCTGTCTCTTGTGAGATTGTTACTTAAATGTTTACATATGAAATGATTTTGATTTTTGACATTATGAAATGTTTACATA GGATGTTTCCTTTCTGCAGGTTGGACTACTAGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATCAGTGCTGTAGGCC TTTGCAATTTAAGAAATGGAATTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTAACTTCCTACTCCTTGA AATAAGCTATTATATTGTTGATTTAAGGTTTAGGGTGTAGTAGTCGGGATTTGTTTCATTTTAAGGTAGCTTAATGTTGT TGCTTTTTAATATTGTAGTGATTCTGTCCTATTTTTTTTTAACTATTTGATTTATTTCTATACCGACACTGGTGACCATG AAAGGTGGGTTGGGACTCATCAATGTGAGGTTTAGGTTTACATTGCACATATTGTCAATAAGTAAAGGTACTTCCTTTGA AGTATCAATTGCTTTTGATAAAGGATCCTGTTTCAAGTCTATTACTTTTTTGTCCATAAGACTAATACTGAATAATTGAT GCTTTTTTCTTTCTTTCTCCTAGTTACAGATTTGAGTGCGTAGAGCTATGTAAACATTAACTAATTCATGTTTTTTGTAG GTCTGACTTGGATAAAGATCAGATGATAGTAGATCTTTCCTTCAAAACAAAAATACTATTTTGGAGTGGTATTGTTCTTG GTTCAATGTCAGTTGGGGTCCTTAGCTATGCAGTTGTGAGGTATATTGTTTTTCCTGACCAGTGTTTTTATTCTTATTGT TTATACATGATGCTTTGGATTTTGTTAATCATGCTGGCTTTAGATTTTGTTTGAATTTGAGAATATGAAATTGAAATACG TTGGGTTTCTTGGTTTGATAAACTTGGTCATGATGATCAAGGTTATAGAGATGATTTGAAAATATTGATAATTTTTGGTT ATTAGAATTGTTTTGGAGATAATTAATCTTTCTTCCGTTGTCAGGAACTGGAATAAGTGGAAACAATGGAAGCAGCAAAG GCAGCTCCAGCAACAAAGGCAAACTGTCAGTGTTAATGTTGATCCTCATCTGGATGACGAGACTGAAGATGTTCCAGATG GACAGTTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTTTTCATTCCATGTGGGCATCTTGTATGTTGCCAAGGG TGTGCCATATCAGTTGAAGGTGAAGTGTCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGGGATTCGGTCCGGATCTT TGAATCTTAA
CDS sequence (LotjaGi3g1v0414300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCACAAGAGCAAGCACTAGTCTCCCTTCTCTCCCAACTAGCCCTATCCTTCGACGGCGCCGTTTTGGGTTTAGC CATAGCCTACGCCGCCGTCCGCACCATCGTCAAATTCACCGCCACCTCCGCCGCCCTTCGCAAGATCAACCACGCCCCTT CCCTCTCCGTCTCCGACCTCCGCTCGCTCCTCACCGACGACGACGATGGCAAAATCGTTATTGTCCGCGGCACCGTTGAC GCCAAGGCCGCCGTCGACGGCAGCTGGAAAACCTTCCGCCCCGGCGTCTTGGTTTCACGTGAGACCGGTGACAGAGGTGT CATCCTTCAAAGAACTGAAACGTGTATATACAATGAATGGAAGGGCTTGTTTGGGTGGACTTCTGATCTTCGAGCCATTG TTACAAGATCGTGGAGACAGCAAGAGTCTACATCCTTAAGAAAGGTGCCTTTTGTTCTCATTGATGTTGGCCGGCAGCCA TATCCCGAGTATGTGGTTGTCAACTTGGATGGCTCAAGACACCCATTACCTCTGATAACAGTTTATCATAAATTGCAACC CATAAGTCCGTCTCCTTATTCATTCTTACAGGCACTCTTTGGGCATGAGTATCCGGTTGGACTACTAGATGAAGAGAAAA TTCTTCCCTTGGGGAAGGATATCAGTGCTGTAGGCCTTTGCAATTTAAGAAATGGAATTGCTGAAATTAAGTCATGCAAA GATCTACCATATTTTCTGAACTGGAATAAGTGGAAACAATGGAAGCAGCAAAGGCAGCTCCAGCAACAAAGGCAAACTGT CAGTGTTAATGTTGATCCTCATCTGGATGACGAGACTGAAGATGTTCCAGATGGACAGTTATGTGTTATATGCCTGATGA GGAGAAGGCGTTCTGTTTTCATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCCATATCAGTTGAAGGTGAAGTG TCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGGGATTCGGTCCGGATCTTTGAATCTTAA
Protein sequence (LotjaGi3g1v0414300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQEQALVSLLSQLALSFDGAVLGLAIAYAAVRTIVKFTATSAALRKINHAPSLSVSDLRSLLTDDDDGKIVIVRGTVD AKAAVDGSWKTFRPGVLVSRETGDRGVILQRTETCIYNEWKGLFGWTSDLRAIVTRSWRQQESTSLRKVPFVLIDVGRQP YPEYVVVNLDGSRHPLPLITVYHKLQPISPSPYSFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCNLRNGIAEIKSCK DLPYFLNWNKWKQWKQQRQLQQQRQTVSVNVDPHLDDETEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEV SPKCPVCRQEIRDSVRIFES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 1 | 246 | 246 | 8.2E-157 | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 20 | 31 | 12 | - | – | |
| Phobius | 32 | 340 | 309 | - | – | |
| Pfam | 132 | 249 | 118 | 2.2E-24 | ||
| PANTHER | 247 | 340 | 94 | 8.2E-157 | – | |
| Gene3D | 253 | 340 | 88 | 2.5E-17 | ||
| SUPERFAMILY | 278 | 333 | 56 | 5.71E-8 | – | |
| Pfam | 286 | 333 | 48 | 2.3E-14 | – | |
| SMART | 288 | 327 | 40 | 7.7E-4 | ||
| ProSiteProfiles | 288 | 328 | 41 | 10.675 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Organelle organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0414300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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