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LotjaGi3g1v0420500.1

Overview

Field Value
Gene ID LotjaGi3g1v0420500
Transcript ID LotjaGi3g1v0420500.1
Lotus japonicus genome version Gifu v1.2
Description Lipoxygenase; TAIR: AT1G55020.1 lipoxygenase 1; Swiss-Prot: sp|P09918|LOX3_PEA Seed linoleate 9S-lipoxygenase-3; TrEMBL-Plants: tr|G7LI99|G7LI99_MEDTR Lipoxygenase; Found in the gene: LotjaGi3g1v0420500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:82851111..82857611) extracted from Lotus japonicus Gifu genome v1.2.

CACAGGTGACAAGTAACAAAGAAAGCTTGTGTTTACCAATTTACCATTTTGAAAGTAGTAGTGTTACTATTTGATTGGTG AAGCAAAAATGTCGCTTAATATTTTGAGCGGCCACAAGATCAAAGGCACGGTGGTGCTGGTGCAAAAGAATGTGCCTGGC GGAGCCACCGATGTACCTCACACTTCCTTCTTAGGCCAATCTGTCTCCTTCCGGTTGATTAGTGCTACCAAAGCTGATAA TTGTAAGTTATTCTGTTGGATATAATAATATAAAATAACTTAAATTTCTAAATAGTATATAATTAGTTATTTAATATGAT ACTCCCTCCGTTCCTATTTATAAGAACCAGATGAAGGGTGTAACTTGGTACTTTTTATAAGAACCAATTCAAATATCAAA ATGTATTAATTATATTTTGGCAACAATACCCTCATTTAATAGAGGTTTCTCTTTCTTTCCACTATGCAAATCATTAATGA CAAATAGAAATTAAAAAAAATAAGTTGGGATAGTTTTGGAAAGTTGAAATAAATTTGAACAAATTTAATACTACCAACTA CTTTCTTAATGGGTGTGAAATGTTAGTTTGATTCAGGAACGGAGAGAGTGTGTCTTTATGTCAAGCGTCCGGTTTATGAC GACTGACGAGAATACACATCCACCCACACACACACACACCAAAAGTATTTCAGCCATTCACATATCATTTCATATGCTGG ATAATAGATTTGAATACTTGGTATGTGTTTATGAGGAGGGTCGTTTAATAAAGTTGTTTAAAAGCTAGTTTCAAACTAAA TTAAATATTGGAGATGTTTAATAAATTATATTAGTTATATATATATATATATATATTAAGAACGTTTTTACATGATTTCA ATTAAGAGTAATTAATTTTTTTTCGGATGCACACCACAACGATTATACTTTTTTATTTTTCACTAATGTTATGTTCATAC CATATTTTCACCAAAATCCAGAGTGTAAACTTAAGAAAAGAGAACGAAATGAGATATGATATATGATTTCTCTGAAACTA ATTCTCATTAAATTAAGAAGAAAATTTTGGCTCGAAGGCTGTTACATTATTCTGGACAAGCGAGGAAATCACCAAGAAAA ATTCCTCTTAACCACACAAAATAACCAGTAAGAAGAAAGAAAAAAAGAAGAAGAAGAAAACCAATGAGCCGACTAGATTT TACAGTTATATTAATCATTCATATAACCATTGATAGAATTTTTTATGGGACCAATTTAGATTTTTTTTTCTGGAACTCAA AACACATTTAACCATTATTTTTGTATTGTAGTCCTACTTGTACGTGTAGTTGGGCTGCAAATTTTAGTTTTAATCAAAAC ATCACAAAAACAGTTCAAACTTCGAATTGAAAAGGGGATGACTTCAATGGACAAATTGGAAAGGGGTTTGTTCCTTGCTC AGTTGCACAGAGAAGGAGTAAATATATTTATGATCTTTTAATTTCTAATATATATGTATAAGCGGTATCTCTGTGTCCTA CTTTTTGGAAGCTAATGGTGTCACCGTGTCTAAATCCTGCCATGTCGAAAGTTGGTGCTTCCTTGAAATTATACTAATTA ATATTCAGCTAAACTAACTAAAGTCTTATGCACAAAATATTTCAGCAACCGGGAAAGGAATAGTAGGAAATGCAGCATAT TTAGATGGTGTTATCAACAATTTGCCAACCTTGGCACCTGGCCAATCTGCCTTCAACATCTATTTTGATCATGACAGTAA CTTCGGAATCCCTGGAGCATTTTATATCAACAACTTTATCACAACTGAGTTCTACCTTGTGAGCTTGACTCTTGAAGGTG TTCCACACCAAGGAAGCCTCCACTTCCATTGCAACTCATGGATTTATAATGCAAACAAGTATCAAACTGATCGCATTTTC TTTGTTAACAATGTAAGTGACATTAGATGATCCTAATCTGAGTAAACAGGCTTAGTTCATTCAACATATATTGGTATTGC AAATTTTTTTCCCATAATTCTTTACAATCAAATATATTTTCAGACATATCGACCAGGTAAAACACCAGCTCCACTAGTGT ACTACAGAGAAGAAGAATTGAAGACTTTAAGAGGAGATGGAACAGGGGAGCGCCAGGAATGGGAAAGGATCTATGACTAT GATTTCTACAATGATTTGGCCGATCCCGACACAAATGACAGTTTGGCTCGTCCAGTTCTTGGAGGATCTACCACTTACCC TTATCCTCGTAGGGGAAGAACCGGCAGACCACCAACAAAAAAAGGTTATGTTCTATACTAGATTGAAGTGTTTTACTTAA AATTAGTGATCTGTTGTAAATTTTGAATATCAACATGCAGTTTCAATGTTCTAATTGGAAGCAGGGTTTGGTGAAAATAT TGAAGAGTGTTACCATACATGAACTAATGCTATAAAAATTATTTACTAGAATAAAGTTTAATTTGTTGCTCTTGCTTATA TGCTTGTGTATATATTTACAGATCCTAACACTGAGAGCAGGAGCCCTATCTTTTATATTCCAAGAGATGAACTTCTTGGT TTCGTGCAATCGCCTGACTTTTTTGCTCTTGTGTATATATTTACAGATCCTAACACTGAGAGCAGGAGCCCTATCTTTTA TATTCCAAGAGATGAACTACTTGGTTTCGTGCAATCGCCTGACTTTTTCGCCTATGGACTCAAGTCTATATCCGAAGTGG AACTTCCCGCGTTAGAATCTGCATTCGCAAGAAATTTATCGCCACATGAGTTTCATAGCTTTGAAGACGTGCATGATCTC TTTGAAGAAGGAATTAAGCTTCCTTTAGATGTAATTAGTCAAATTAGTCATGAACCAGTGTTGGAGAAACTCGTCACAAC TGATGGTCAGCAGATGAAGTTTCCAAAGCCTAAAGTGATTCAAGGTATAATCTAAACTACTTAATTACTATATATGTTAC AGCAGCCACTTAATTTAATCCAAACTAGCTAATATTAACATTTTACACATAACCCTGATGGATATTTTTGAACAATTTCC ATTGACAATTGTTCTTCTACATTGTATACAATTATATGTTGAGCAGTGAACAAGTCTGCATGGATGACTGATGAAGAATT TGCAAGAGAGATCATTGCTGGTGTAAATCCAGCCTTAATTCGCTGTCTTCATCGAGTAAGCTTAAAGAGATCGATGACCA AACCATTTTATAATTTTCTATGCATCACATTTATTGATTTGATACTTTTCCAGATGCAGAATCAATCAATATTTGTTTAA CACTCCTCATGATTATCCTAAATTAATTGCAGCCAGAGCAGTTTCCTCCAAAAAGTAACCTTGACAGTGGATCCTATGGT GATCATACTAGCACAATAACCAAAGAACACATAGAGCCTAACTTAGACGGGCTCACAGTAGAAGAGGTAAATATGAACTC AAAATTGGGTATTTTTTTTTTTGCAGAACTCAATTTTATATATAGACTAATTAAAATTTGGCTAAGCAGGCTATTGAGAA AAAGAAATTGTTCCTACTGGATGACCATGATGCAATAATGCCATATTTAAGGAAAATAAACTCCACAAGCTCAAAGGCGT ACGCTACGAGAACCATCCTTTTCTTGAAGGATGATGGAACTTTGAGGCCACTAGCCATTGAGTTAAGTTTGCCAAATCCT CGAGGAGATCATTTTGGTGCTGTTAGCAATGTCTACCTGCCTGCAACAGAAGGTGTTCAAAGTTACATTTGGCTACTAGC CAGAGCCTATGCGGTCGTAAACGATTCGAACTATCATCAGCTAATCAGCCACTGGTACACATTTTCAATGAAATTACTTC ATTCACACAATTAAATTTATCTATCTATCAAGCAAGTAGTCTATATATTAATTATAAAGTTAATTTCATGGGTTATATTG TTATAGGTTGAATACTCATGCAGCTGTTGAGCCATTTCTGATAGCAACCAACAGGCAGCTCAGTGTGCTTCATCCTATTT ACAAACTTCTAGTTCCTCACTATCGTAATACCATGAATATCAATGCCAATGCACGAATAAGGCTGATCAGTGCAAATGGC ATTATAGAACAGACATTCTTGGCAGGAGAGTATGCTATGGAATTGTCTTCTGCTATTTATAAGAACTGGGTTTTTACAGA GCAAGCTCTACCTTCTGATCTCATCAAGAGGTAAGTAATCTTACAAATATACACCACTAAGAATACTAACTGTTCTAAGT TTAATTGGCCAATTTTTTTTTACGAATCAAAGCAACAAGAGCCGAATCTCAGTGGATCATGACAAGATTAATTGAGCATA AAAAGAATGAACTTGAAGACTTTCCTAATGTTGTTTTTGTTGTTGTTGTTGTTGTTGTAATTCAGAGGAATGGCTGTTGA GGATGAAAATTCCCCTCATGGCATTCGCCTTGTGTTAGAGGACTACCCTTATGCAGCTGATGGACTTGAAATTTGGGGTG CTATTAGTACATGGGTCCAAGACTATGTTACCTTATACTACGTCTCAGATGATGCAGTTAAGGAAGACTCTGAACTCCAG TCTTGGTGGAAAGAAGTTGTGGAGGTGGGTCATGGTGACAAGAAAGGTGAGCCATGGTGGCCTAAAATGCAAACTCGCAA AGACTTGATTCAAACTTGCACCATTGTCATATGGACTGCTTCAGCACTTCATGCATCTGTTAATTTTGGACAATATCCAT ATGGAGGTATCATCTTGAATCGCCCTACTATTAGCAGGCGATTCATGCCCGAGGAAGGAACTGAAGAGTATGAGGAGCTG AAAAATGACCCTGAGAAGGCTTACTTGAGAACAATTACACAAAAGCCTCACACTCTTATTAATATTTCAACTATAGAACT TTTGTCAACCCATGTTTCTGATGAGTTCTACCTTGGACAAAGAGATGGGGCTGAGCATTGGACTTCTGATACAATCGCTC TACAAGCCTTTAACAAGTTTGGGAAAAGGCTAGCAGAAATTGAGGAACAGCTCATAAAGAAGAATAAGGATGTGAATTTG AAAAATAGGTATGGACCAGTTAGTATGCCTTACACTTTGCTCTATCCAACAACTGAGCCAGGAATGACTTTCAGGGGAAT CCCCAACAGTGTCTCTATCTAAAACTACAAGCAGTGCTGGTTTGTGAAGTATTGCAGCTTTGAATAAATCATCCAAGACA AGGAATCTCAATCCCTTTATGTTCTTGTATGAGTGTGTTTGTTAACCACTGTTTTCAATTCATGTTAAAAACAAGTGTAT TAATGCACATTGTAACATGTGTCATCATGTTTGGATATTTTTCCATTAAGTAAAAGTGTGTTGACTGTTAAATGTTACTG GTAGTTCACGATAAAACCCCAAAACAAGGTAAATAGGTCAACACGACGCAACGTCTTAGGATTTCTCAGCAAATGAACAT GTCTATTACATTAATGGAGAGAACGAGGATCAAACAATTACATCGGGGGGAAGTGATGATCAGGTAACTACAAAAGATAA TTTATGAAACTGTCACAGGATAAATATCCCGAATGGAAAATCGACTTCCAAATGACGAGGTCTTTGGGAAGAATTGTTTT TTCCAACTTTAACAAAAAACCAACATCAAAATCTACCCAATTCTCTCTCTCTCGATCTTCTTCCTCGACAAGCAATCACC CCATGATCACAATATCAAAACACTGTCACATAGCTTCTTATTGAGCATAAGAAGCAAATAGAGTGATTAGCAGTTAGCAT TCAGTTAGCATATATATGGTTAGAATTCAGTTAAGGGTAGTTAGCATTATTGACATTTTATCAACTTTAATACTTTTCAT GAAATTTCTCGCACATAAGAAAATCAATAACCTTCAAAACTGAGTAACTACTTAACTCATACTCATTCTTTTTAAGAAAA CACCAAAAGCACACCAAGTCGGACCCTTTAGGGATGTTAGCACCAGAAACAGAAAAACAATACCTGATATAGCTGACTCC CTTGGTTCACAGACTCCAAAGCAACCCTGAGAGATTCAAAGGCTCGAAGCTGTTCATGGCTCGCTGAGGGACTCATCACT ATCTTCCAATTCCTCAAACAGAGGACTCAACAGCTTCACCCTGCATGCGAATCATATTCCCACACACCCTCTTGTAAACG TTCTGGCATTCGGGAAACCCAGAAATAGGAACAGAGGTGAAAGCTTGTAACACTTGAGAGGGTAATTGGGAAAGAGAATG TAATTGCCAATTGTATTGTAGCTAGATATGTGAGGCGACTAGTCAGGGGCATAAGGCCTAGCCTACCAAAGGCCGGGCTT AGGGCAGACTAATTTGCTAAAAAGAGAGTTTAGGCTTTTTAAAATACTTGATTAGCTAAAAATGCTAGGTCTAGGCTTAC AAAAAAAGCTTATTAGGCTTGATAGGCCGCATATTTGCCTAATTTTTTCATAATTTAATAAATATTATACTTATATATTA ATAAATTTATCGTAATAAAAC 

CDS sequence (LotjaGi3g1v0420500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGCTTAATATTTTGAGCGGCCACAAGATCAAAGGCACGGTGGTGCTGGTGCAAAAGAATGTGCCTGGCGGAGCCAC CGATGTACCTCACACTTCCTTCTTAGGCCAATCTGTCTCCTTCCGGTTGATTAGTGCTACCAAAGCTGATAATTCAACCG GGAAAGGAATAGTAGGAAATGCAGCATATTTAGATGGTGTTATCAACAATTTGCCAACCTTGGCACCTGGCCAATCTGCC TTCAACATCTATTTTGATCATGACAGTAACTTCGGAATCCCTGGAGCATTTTATATCAACAACTTTATCACAACTGAGTT CTACCTTGTGAGCTTGACTCTTGAAGGTGTTCCACACCAAGGAAGCCTCCACTTCCATTGCAACTCATGGATTTATAATG CAAACAAGTATCAAACTGATCGCATTTTCTTTGTTAACAATACATATCGACCAGGTAAAACACCAGCTCCACTAGTGTAC TACAGAGAAGAAGAATTGAAGACTTTAAGAGGAGATGGAACAGGGGAGCGCCAGGAATGGGAAAGGATCTATGACTATGA TTTCTACAATGATTTGGCCGATCCCGACACAAATGACAGTTTGGCTCGTCCAGTTCTTGGAGGATCTACCACTTACCCTT ATCCTCGTAGGGGAAGAACCGGCAGACCACCAACAAAAAAAGATCCTAACACTGAGAGCAGGAGCCCTATCTTTTATATT CCAAGAGATGAACTACTTGGTTTCGTGCAATCGCCTGACTTTTTCGCCTATGGACTCAAGTCTATATCCGAAGTGGAACT TCCCGCGTTAGAATCTGCATTCGCAAGAAATTTATCGCCACATGAGTTTCATAGCTTTGAAGACGTGCATGATCTCTTTG AAGAAGGAATTAAGCTTCCTTTAGATGTAATTAGTCAAATTAGTCATGAACCAGTGTTGGAGAAACTCGTCACAACTGAT GGTCAGCAGATGAAGTTTCCAAAGCCTAAAGTGATTCAAGTGAACAAGTCTGCATGGATGACTGATGAAGAATTTGCAAG AGAGATCATTGCTGGTGTAAATCCAGCCTTAATTCGCTGTCTTCATCGACCAGAGCAGTTTCCTCCAAAAAGTAACCTTG ACAGTGGATCCTATGGTGATCATACTAGCACAATAACCAAAGAACACATAGAGCCTAACTTAGACGGGCTCACAGTAGAA GAGGCTATTGAGAAAAAGAAATTGTTCCTACTGGATGACCATGATGCAATAATGCCATATTTAAGGAAAATAAACTCCAC AAGCTCAAAGGCGTACGCTACGAGAACCATCCTTTTCTTGAAGGATGATGGAACTTTGAGGCCACTAGCCATTGAGTTAA GTTTGCCAAATCCTCGAGGAGATCATTTTGGTGCTGTTAGCAATGTCTACCTGCCTGCAACAGAAGGTGTTCAAAGTTAC ATTTGGCTACTAGCCAGAGCCTATGCGGTCGTAAACGATTCGAACTATCATCAGCTAATCAGCCACTGGTTGAATACTCA TGCAGCTGTTGAGCCATTTCTGATAGCAACCAACAGGCAGCTCAGTGTGCTTCATCCTATTTACAAACTTCTAGTTCCTC ACTATCGTAATACCATGAATATCAATGCCAATGCACGAATAAGGCTGATCAGTGCAAATGGCATTATAGAACAGACATTC TTGGCAGGAGAGTATGCTATGGAATTGTCTTCTGCTATTTATAAGAACTGGGTTTTTACAGAGCAAGCTCTACCTTCTGA TCTCATCAAGAGAGGAATGGCTGTTGAGGATGAAAATTCCCCTCATGGCATTCGCCTTGTGTTAGAGGACTACCCTTATG CAGCTGATGGACTTGAAATTTGGGGTGCTATTAGTACATGGGTCCAAGACTATGTTACCTTATACTACGTCTCAGATGAT GCAGTTAAGGAAGACTCTGAACTCCAGTCTTGGTGGAAAGAAGTTGTGGAGGTGGGTCATGGTGACAAGAAAGGTGAGCC ATGGTGGCCTAAAATGCAAACTCGCAAAGACTTGATTCAAACTTGCACCATTGTCATATGGACTGCTTCAGCACTTCATG CATCTGTTAATTTTGGACAATATCCATATGGAGGTATCATCTTGAATCGCCCTACTATTAGCAGGCGATTCATGCCCGAG GAAGGAACTGAAGAGTATGAGGAGCTGAAAAATGACCCTGAGAAGGCTTACTTGAGAACAATTACACAAAAGCCTCACAC TCTTATTAATATTTCAACTATAGAACTTTTGTCAACCCATGTTTCTGATGAGTTCTACCTTGGACAAAGAGATGGGGCTG AGCATTGGACTTCTGATACAATCGCTCTACAAGCCTTTAACAAGTTTGGGAAAAGGCTAGCAGAAATTGAGGAACAGCTC ATAAAGAAGAATAAGGATGTGAATTTGAAAAATAGGTATGGACCAGTTAGTATGCCTTACACTTTGCTCTATCCAACAAC TGAGCCAGGAATGACTTTCAGGGGAATCCCCAACAGTGTCTCTATCTAA 

Protein sequence (LotjaGi3g1v0420500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLNILSGHKIKGTVVLVQKNVPGGATDVPHTSFLGQSVSFRLISATKADNSTGKGIVGNAAYLDGVINNLPTLAPGQSA FNIYFDHDSNFGIPGAFYINNFITTEFYLVSLTLEGVPHQGSLHFHCNSWIYNANKYQTDRIFFVNNTYRPGKTPAPLVY YREEELKTLRGDGTGERQEWERIYDYDFYNDLADPDTNDSLARPVLGGSTTYPYPRRGRTGRPPTKKDPNTESRSPIFYI PRDELLGFVQSPDFFAYGLKSISEVELPALESAFARNLSPHEFHSFEDVHDLFEEGIKLPLDVISQISHEPVLEKLVTTD GQQMKFPKPKVIQVNKSAWMTDEEFAREIIAGVNPALIRCLHRPEQFPPKSNLDSGSYGDHTSTITKEHIEPNLDGLTVE EAIEKKKLFLLDDHDAIMPYLRKINSTSSKAYATRTILFLKDDGTLRPLAIELSLPNPRGDHFGAVSNVYLPATEGVQSY IWLLARAYAVVNDSNYHQLISHWLNTHAAVEPFLIATNRQLSVLHPIYKLLVPHYRNTMNINANARIRLISANGIIEQTF LAGEYAMELSSAIYKNWVFTEQALPSDLIKRGMAVEDENSPHGIRLVLEDYPYAADGLEIWGAISTWVQDYVTLYYVSDD AVKEDSELQSWWKEVVEVGHGDKKGEPWWPKMQTRKDLIQTCTIVIWTASALHASVNFGQYPYGGIILNRPTISRRFMPE EGTEEYEELKNDPEKAYLRTITQKPHTLINISTIELLSTHVSDEFYLGQRDGAEHWTSDTIALQAFNKFGKRLAEIEEQL IKKNKDVNLKNRYGPVSMPYTLLYPTTEPGMTFRGIPNSVSI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 3 149 147 1.5E-48
PANTHER 7 842 836 0.0
PANTHER 7 842 836 0.0
SUPERFAMILY 8 149 142 6.76E-44
CDD 9 146 138 7.97581E-40
SMART 9 146 138 3.6E-43
ProSiteProfiles 16 145 130 16.291
Pfam 46 144 99 2.1E-13
PRINTS 115 133 19 7.9E-80
PRINTS 141 162 22 7.9E-80
ProSiteProfiles 148 842 695 293.098
Gene3D 150 249 100 2.9E-40
SUPERFAMILY 151 842 692 4.58E-271
Pfam 158 825 668 3.2E-298
PRINTS 180 196 17 7.9E-80
MobiDBLite 199 235 37 -
PRINTS 213 232 20 7.9E-80
Gene3D 250 337 88 2.6E-25
PRINTS 280 301 22 7.9E-80
Gene3D 338 474 137 4.7E-56
PRINTS 366 385 20 7.9E-80
PRINTS 432 456 25 7.9E-80
Gene3D 475 841 367 1.2E-164
PRINTS 479 496 18 1.6E-23
PRINTS 497 514 18 1.6E-23
ProSitePatterns 497 511 15 -
PRINTS 517 537 21 1.6E-23
ProSitePatterns 524 534 11 -
PRINTS 754 768 15 7.9E-80

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Molecular function Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0420500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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