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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0430200 |
| Transcript ID | LotjaGi3g1v0430200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptotagmin-5; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|K7KCB9|K7KCB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84146733..84152180) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTGCTTTCTGGGATGTTTATGGGGATACTGTTCGGCATAGCATTGATGGCAGCATGGGAGCGGATGATGAGGTA CCGAAGCGCCAAGAGAATTGCAAAGGTTTGGATGTTGGTTTTGTTTCATATCAAAGATTAGTAGTGCTGTTCTGTTTGTA TTGACTTTGGTTTTGCTGATTATTACATTAGAGATTGTGTGGATTTGTATGTACTAAGCAGTAGTTTTTTTTATGTGGGT AGGGGGGCTAGTTGATAGATTGATATGAAATTATTGGGGGCTTCTTCAATTTTTTATATGAAAGGTTTTGGGTGATCATT GGGTTTATGGTACTGTCAACAATCCACTTGAGAAATTTAATAAAGCTTAGGGAAAGCAGGGAAATTTAATTGTCATAATT TATGTGACTTGTTAGAACTGGAACAAAGGGTTTATCAGTTCTGAAATTGATTATCATGATCCATTTTATGGATTGATGGA ATCATAAAGGTATCTTTATTCTGAAACTGCATAGTGGTCGATTATAAGATACTAGAATGAGTTACAAGCCTAATAGTGTA TTTCTTTTCGTCATAAGCCAACCATAGAGCCTAATTGCACCATTTCTTTGTTCCTGTAAACATCGGCATGGTGTCTGAAT CCTGGATTTTGTACTCATATAACCAATTTCATGTTGAGTTGTCTTCTATGCCCATATTTTATATTTAAATACTGCCCTGT TTCAATCTATGGATAATTTTGTCTTTTCTTAATATTTATCCTCTTTTGCTTCACAGGCAGCTGACATTAAACTCCTTGGA TCCCTGAACAGAGACGATTTAAAGAAAATTTGTGGTGATAATCTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGT GGGAATTTTCCATTTCTAAATATTACTTGGCATTCAAAATGATTTTTATGCACTGCACCTAGTATTTTATTATGATTCTG CTCTGTGTATAACTGTTCGTTGCATGGGCTTTTTCAGGTGAAATGGTTAAACAAGATGCTGAGCAAACTTTGGCCATTTG TGGCAGAAGTGAGTGAGAATGCTTGCTTGCTCATTATGTATTTTATTCCTATAAAATTGCTTAGCATTCTAGCATCAGAG AATATTGCTTCTAACATCCCATTTCTGTTGTTATTTGAAAGAAAATATTCCTGAAGTATTAGATATGGTGTGTTTATATG AATCTGTCTCTGGCAATAGCAATAGAGATATAATCATGTTCTCATAGTATCATTGGAGTAATTAATCTTTCCTCTCTCAG GAATATCATTCGATCTATCAGTTTCAATAATATAATGGTTTACTTAGTCTTTAACTATCACCATGTTTAGTGGCTAGAAG AATAATACTCTTAATGCCAAAAGCCTTGAGGTACTTGATTCTTCTGCTGCATCCAACTTGTGTCTGAACTCTAAAGTTAA TAGTTACTACTTATTAGTAGCCCATAGGGTAAGCATTACTAGTTTACAAAACACATGCAATATAATGGGTTCAATAAGAG TCTGTTTGCTAGTATCATGTACCTATGTTTTAGACATATGCACCTTGCTAGGCTTAGAGATTAATCAATTTCACCTTGTA CTTATGCTCTAGGAGATCTTCTACTTTAAATTTTCTTGGAAATCTACAAGGTATACCCCTGCTTTGCTTAAATAGATGAC TTGTTCATGATGGATTTTGTTTACCTTTAGGCAGCAACACTGGTGATCAGGGAATCTGTTGAACCACTGCTAGAAGAGTA CAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTGTCA ACCTTTAGTGTTTCCTCTCGACATTCTTCTGCAAGTTCAATAATGTTTATTTCAGCTTATTTTGGGGGAATAATCATTTT TCTTTTCAAAAAAGAAAACTGTTTATTTCCATCCTTTGATCTCACATATCATTTACATCAATATCAATAAAATTTTATAT TTTCAGTATTCCTTTCCTCCCTCCATACCTAAAAGAGTAACCCTATAATTTCAACAGTAATTAATTCATTTCCTTGCTGC GTTAATGAAATTGTTATTAACTGCTGAATGAAATGCATAGGATCCAGTAAAGGCTGATTAAAGTGTTATGAAACCGCAAT ATTTCCACAGCACTTGTGTTTTTTTCCCTTTTCAAATTTTCTGTTAGATCATTTTGTAAGTCAAAAATTTATATATGCAT AATTTTTTCATCAATGCAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGG TGGTGATCCCAGTATTATTTTGGCTGTTGAAGCCGCCATGGTTGCGTCGATCCCTATTCAGGTTCTATTAGCAGAGTATA TTTCTGGTGAATTTCATCAAATTCCTTCTGCAGTTGTCTAAATATTAGTTTTAATGCATTTTTGCTCCAGCTGAAAGATC TAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCGGTTGTTGTTGCTCTA CTTGCTGAGGTAATCTTTTGGGACATGCAGAGGGAAAGAATAAAATCGTTAAATCAGTTTGTATGTGAAGGCATGAAATT GTATATGAAGATATATTAGTGGCTTTACCAAGCTGGTTTCTTTTTTGCTCCTCTTCTTTCAATCTCTCATCAACTTCATG TTGTCTCTGCAAGATAAGTTTGTTGTGTGGCATTTTTTTCCGCGTTTTCTATAGAGAGAATTTATGCTTGACTAAGTAGA TGGATGGTTAAGAAAAACAACCAAAATGGTAGATAATTGGTCCCTTGTGATTATTAGGGCGACGCACTTTTCGAGATGGT GAATAATTGGGCTTGACTTTTTATAATTAAACCATTTATTCTTCTCATGGCCAAAATCCATATTCCTATTACTTTTTTAT AACTCTATCATCCTTGCCAAACACATGATTCCAACTAAACTGATACTATTTTTTTTCACTGGTGGAATTACTGACTTTTG CTTTAACATTTTAATCAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTGACGGCAATTCCTGG AATTTCAGATATGATTGATGTGAGTTCTGTTTGTTTTATGTAGTACTATCCCCTGTCCTGTTTTTGAAGTAACATTTACA ATACATTGACCTTCATTTTGTAGGATACTGTGAATACAATTGTGACTGATATGCTCCAATGGCCTCATAGGATTGTCGTT CCACTTGGTGGTATACCTGTTGATACCAGGTAAATATGAATTTTATTGAAGTTTATACCTTTGGTTTCATTTCTTTCTGA TTGCTAATGGAAACATGACTTGCTATGTTACAATATCTCAGTCACAAAATTTTCATGAGTTTGAATTTGTGTTAGTATTC AAAAAGTTTGATCTCTCAATCACCATTTGAGCAGCACCTTTTTTTTCTATCTTGCAGTGAACTGGAGCTTAAACCCCAGG GAAGCCTTAAAGTGGTTGTAGTGAAAGCAAATGATTTGAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTAGTT TTGTATATTCGACCCTTGTTTAAGGTTAAGACCAAGGTTATCGACAACAACTTGAATCCTACTTGGGATCAGACATTTGA ATTGATTGCAGAAGACAAGGAGACTCAGTCACTCACTCTTGAGGTTTTACCCTACAAATACTTTGCCTCCTTTTTATGCT GCTCTCTTCTACCTCCTTTCTTAGAGATATGTTTTGACATTTCGTTTTTACTAATATAACTATACTCATTACTTAGGAAA AATAATGAATTTTTTTTATTAAACTGTTTCGTGTAAGTTCAATATATGAAGATGAAAATATAGTTAATTACCTGGTTTTT GTTCTGATATTAATGTAATGATTAGAAGCATATTACATACTTCTTCCTGAGCATGATTACTTTTGTTTCTACGCTTTGAA CCTTCTAATTCTGATCCTAGAGCCATTTTTTTATGCAAACTAGATTTTCTTTGCAATACATACAAAGAAATCCTGTGAAT TTTCTCCCTAAAACTTAACATACAACTTTGTACTATAATTGACGTAATACGATGCTCATGACTCTTAGCGATGTTCACCA ACAACGGATCTATGTTGAGCATAGTAGGGGCAATTTCCCCTACAAGATTTTAATTTCTAATGATAGATTGATAGTGTATA TTGTATTATAACAAGTTAAGAACATAAAGTGTTTAATTTGATCAACCGGATATTGGAAATGCCCCCACGCTTTTATAATT TTGTTCTGATCCATACTTACTTTCCAATCTGTAAAGCAATAAGCCTGAGTAAGTGAGCCCATCAGTTTTATAGTATTATT TTCAAGGCAAATATTTATTTTATTTAATAGTTTTAATACCATTAGCAACAACAATAGTTTATATCACTCAGTGGGAAGGG GTGCCGGACACAATGGTTAAAAGTGACTGTTTGAACCTCTAGGTCGAGTGTTAGATTCCTAGGAGCTGCACTCTTGGGGA GACCTTTACCACACCCGGGTGGAATTGCGAGAGCAATTTAACACAACAACAAAAAAACAATAGTTTATATGTTCATATTG CCCCTACAACTTAAAATTCCTTGATCCATCACTGATGTTCATGACTCTTGAAACAGGTTTTTGATGAAGACATTGGGCAG GATAAGCGATTAGGGATAGTACAATTACCCCTTATTGGCCTGGAAGCAGAAACTGAAAAGGACATTGAGTTGAGGCTTCT GTCATCTCTTGATAGACTGAAGGTGAAAGATAAGAAGGACCGAGGAACTTTGACAATAAAGGTACATGCATTAAGCTGTA TGGATGGTGATTTACTATGAGGCTGTGCATATTATATATATATACACGGATGAAATCTATTGAATGAAAAGGCTTCTTTT ATGCACTTCAGGTTTTCAGTTCTTGCTACCATTTAGTCATTTACACTTTTTGAGCTTGATTGCAAGTTATAATGAGGTTG GAATTTCAGGTCTTTTATCATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTTGAAGCAGAAAAACTGATATTAGAAGA AAGGAAGAAACTCAAAGCAGCTGGAGTCATAGGAAGCACGATGGACGCGGTAGGGTCCGGTGTTGGACTGGTTGGTACCG GTGTGCTTGCTGGCGCTGGGCTCGTGGGGACCGGCATCGGTGCTGGAGCCGGGCTGGTGGGGAGCGGCATTGGCGCGGGA GCCGGGTTTGTTGGGAGCGGTCTCGGAGCCTTTGGTAGCGGACTGAGCAAGGCGGGGAAGTTCATGGGAAGGACAATCAC GGGAAGTCATAGTGCCTCCAGGAGGAGTGGTTCTTCTACTCCAGTCCATAATGCACAGGAGAATGGTGGTGGTGCAAAGC CTCTCTAA
CDS sequence (LotjaGi3g1v0430200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTGCTTTCTGGGATGTTTATGGGGATACTGTTCGGCATAGCATTGATGGCAGCATGGGAGCGGATGATGAGGTA CCGAAGCGCCAAGAGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTGAACAGAGACGATTTAAAGAAAATTT GTGGTGATAATCTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGTTAAACAAGATGCTGAGCAAACTT TGGCCATTTGTGGCAGAAGCAGCAACACTGGTGATCAGGGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGG AATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTA CCAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAGTATTATTTTGGCTGTTGAAGCCGCCATG GTTGCGTCGATCCCTATTCAGCTGAAAGATCTAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGAT CCCTTGCATTTCTGCGGTTGTTGTTGCTCTACTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTG GAAGTTTGACGGCAATTCCTGGAATTTCAGATATGATTGATGATACTGTGAATACAATTGTGACTGATATGCTCCAATGG CCTCATAGGATTGTCGTTCCACTTGGTGGTATACCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAGCCTTAA AGTGGTTGTAGTGAAAGCAAATGATTTGAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTAGTTTTGTATATTC GACCCTTGTTTAAGGTTAAGACCAAGGTTTTTGATGAAGACATTGGGCAGGATAAGCGATTAGGGATAGTACAATTACCC CTTATTGGCCTGGAAGCAGAAACTGAAAAGGACATTGAGTTGAGGCTTCTGTCATCTCTTGATAGACTGAAGGTGAAAGA TAAGAAGGACCGAGGAACTTTGACAATAAAGGTCTTTTATCATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTTGAAG CAGAAAAACTGATATTAGAAGAAAGGAAGAAACTCAAAGCAGCTGGAGTCATAGGAAGCACGATGGACGCGGTAGGGTCC GGTGTTGGACTGGTTGGTACCGGTGTGCTTGCTGGCGCTGGGCTCGTGGGGACCGGCATCGGTGCTGGAGCCGGGCTGGT GGGGAGCGGCATTGGCGCGGGAGCCGGGTTTGTTGGGAGCGGTCTCGGAGCCTTTGGTAGCGGACTGAGCAAGGCGGGGA AGTTCATGGGAAGGACAATCACGGGAAGTCATAGTGCCTCCAGGAGGAGTGGTTCTTCTACTCCAGTCCATAATGCACAG GAGAATGGTGGTGGTGCAAAGCCTCTCTAA
Protein sequence (LotjaGi3g1v0430200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLSGMFMGILFGIALMAAWERMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKMLSKL WPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAAM VASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNTIVTDMLQW PHRIVVPLGGIPVDTSELELKPQGSLKVVVVKANDLKNMEMIGKSDPYVVLYIRPLFKVKTKVFDEDIGQDKRLGIVQLP LIGLEAETEKDIELRLLSSLDRLKVKDKKDRGTLTIKVFYHQFNKEEQLAALEAEKLILEERKKLKAAGVIGSTMDAVGS GVGLVGTGVLAGAGLVGTGIGAGAGLVGSGIGAGAGFVGSGLGAFGSGLSKAGKFMGRTITGSHSASRRSGSSTPVHNAQ ENGGGAKPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 305 | 305 | 2.1E-290 | – | |
| PANTHER | 1 | 305 | 305 | 2.1E-290 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 21 | 18 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 489 | 464 | - | – | |
| ProSiteProfiles | 66 | 249 | 184 | 24.832 | ||
| Pfam | 68 | 248 | 181 | 1.6E-17 | ||
| Gene3D | 259 | 304 | 46 | 9.1E-8 | ||
| SUPERFAMILY | 262 | 362 | 101 | 2.96E-12 | – | |
| Pfam | 264 | 304 | 41 | 2.4E-5 | ||
| CDD | 266 | 330 | 65 | 9.62781E-11 | – | |
| PANTHER | 303 | 489 | 187 | 2.1E-290 | – | |
| PANTHER | 303 | 489 | 187 | 2.1E-290 | ||
| Coils | 362 | 382 | 21 | - | – | |
| TMHMM | 401 | 423 | 23 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| MobiDBLite | 461 | 480 | 20 | - | – | |
| MobiDBLite | 461 | 489 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0430200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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