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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0430200 |
| Transcript ID | LotjaGi3g1v0430200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1JKI9|I1JKI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0430200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84146736..84152180) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTTGCTTTCTGGGATGTTTATGGGGATACTGTTCGGCATAGCATTGATGGCAGCATGGGAGCGGATGATGAGGTA CCGAAGCGCCAAGAGAATTGCAAAGGTTTGGATGTTGGTTTTGTTTCATATCAAAGATTAGTAGTGCTGTTCTGTTTGTA TTGACTTTGGTTTTGCTGATTATTACATTAGAGATTGTGTGGATTTGTATGTACTAAGCAGTAGTTTTTTTTATGTGGGT AGGGGGGCTAGTTGATAGATTGATATGAAATTATTGGGGGCTTCTTCAATTTTTTATATGAAAGGTTTTGGGTGATCATT GGGTTTATGGTACTGTCAACAATCCACTTGAGAAATTTAATAAAGCTTAGGGAAAGCAGGGAAATTTAATTGTCATAATT TATGTGACTTGTTAGAACTGGAACAAAGGGTTTATCAGTTCTGAAATTGATTATCATGATCCATTTTATGGATTGATGGA ATCATAAAGGTATCTTTATTCTGAAACTGCATAGTGGTCGATTATAAGATACTAGAATGAGTTACAAGCCTAATAGTGTA TTTCTTTTCGTCATAAGCCAACCATAGAGCCTAATTGCACCATTTCTTTGTTCCTGTAAACATCGGCATGGTGTCTGAAT CCTGGATTTTGTACTCATATAACCAATTTCATGTTGAGTTGTCTTCTATGCCCATATTTTATATTTAAATACTGCCCTGT TTCAATCTATGGATAATTTTGTCTTTTCTTAATATTTATCCTCTTTTGCTTCACAGGCAGCTGACATTAAACTCCTTGGA TCCCTGAACAGAGACGATTTAAAGAAAATTTGTGGTGATAATCTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGT GGGAATTTTCCATTTCTAAATATTACTTGGCATTCAAAATGATTTTTATGCACTGCACCTAGTATTTTATTATGATTCTG CTCTGTGTATAACTGTTCGTTGCATGGGCTTTTTCAGGTGAAATGGTTAAACAAGATGCTGAGCAAACTTTGGCCATTTG TGGCAGAAGTGAGTGAGAATGCTTGCTTGCTCATTATGTATTTTATTCCTATAAAATTGCTTAGCATTCTAGCATCAGAG AATATTGCTTCTAACATCCCATTTCTGTTGTTATTTGAAAGAAAATATTCCTGAAGTATTAGATATGGTGTGTTTATATG AATCTGTCTCTGGCAATAGCAATAGAGATATAATCATGTTCTCATAGTATCATTGGAGTAATTAATCTTTCCTCTCTCAG GAATATCATTCGATCTATCAGTTTCAATAATATAATGGTTTACTTAGTCTTTAACTATCACCATGTTTAGTGGCTAGAAG AATAATACTCTTAATGCCAAAAGCCTTGAGGTACTTGATTCTTCTGCTGCATCCAACTTGTGTCTGAACTCTAAAGTTAA TAGTTACTACTTATTAGTAGCCCATAGGGTAAGCATTACTAGTTTACAAAACACATGCAATATAATGGGTTCAATAAGAG TCTGTTTGCTAGTATCATGTACCTATGTTTTAGACATATGCACCTTGCTAGGCTTAGAGATTAATCAATTTCACCTTGTA CTTATGCTCTAGGAGATCTTCTACTTTAAATTTTCTTGGAAATCTACAAGGTATACCCCTGCTTTGCTTAAATAGATGAC TTGTTCATGATGGATTTTGTTTACCTTTAGGCAGCAACACTGGTGATCAGGGAATCTGTTGAACCACTGCTAGAAGAGTA CAGACCTCCTGGAATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTGTCA ACCTTTAGTGTTTCCTCTCGACATTCTTCTGCAAGTTCAATAATGTTTATTTCAGCTTATTTTGGGGGAATAATCATTTT TCTTTTCAAAAAAGAAAACTGTTTATTTCCATCCTTTGATCTCACATATCATTTACATCAATATCAATAAAATTTTATAT TTTCAGTATTCCTTTCCTCCCTCCATACCTAAAAGAGTAACCCTATAATTTCAACAGTAATTAATTCATTTCCTTGCTGC GTTAATGAAATTGTTATTAACTGCTGAATGAAATGCATAGGATCCAGTAAAGGCTGATTAAAGTGTTATGAAACCGCAAT ATTTCCACAGCACTTGTGTTTTTTTCCCTTTTCAAATTTTCTGTTAGATCATTTTGTAAGTCAAAAATTTATATATGCAT AATTTTTTCATCAATGCAGGTATTCGTGTGCAGAGTCTTACCAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGG TGGTGATCCCAGTATTATTTTGGCTGTTGAAGCCGCCATGGTTGCGTCGATCCCTATTCAGGTTCTATTAGCAGAGTATA TTTCTGGTGAATTTCATCAAATTCCTTCTGCAGTTGTCTAAATATTAGTTTTAATGCATTTTTGCTCCAGCTGAAAGATC TAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCTTGCATTTCTGCGGTTGTTGTTGCTCTA CTTGCTGAGGTAATCTTTTGGGACATGCAGAGGGAAAGAATAAAATCGTTAAATCAGTTTGTATGTGAAGGCATGAAATT GTATATGAAGATATATTAGTGGCTTTACCAAGCTGGTTTCTTTTTTGCTCCTCTTCTTTCAATCTCTCATCAACTTCATG TTGTCTCTGCAAGATAAGTTTGTTGTGTGGCATTTTTTTCCGCGTTTTCTATAGAGAGAATTTATGCTTGACTAAGTAGA TGGATGGTTAAGAAAAACAACCAAAATGGTAGATAATTGGTCCCTTGTGATTATTAGGGCGACGCACTTTTCGAGATGGT GAATAATTGGGCTTGACTTTTTATAATTAAACCATTTATTCTTCTCATGGCCAAAATCCATATTCCTATTACTTTTTTAT AACTCTATCATCCTTGCCAAACACATGATTCCAACTAAACTGATACTATTTTTTTTCACTGGTGGAATTACTGACTTTTG CTTTAACATTTTAATCAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTGGAAGTTTGACGGCAATTCCTGG AATTTCAGATATGATTGATGTGAGTTCTGTTTGTTTTATGTAGTACTATCCCCTGTCCTGTTTTTGAAGTAACATTTACA ATACATTGACCTTCATTTTGTAGGATACTGTGAATACAATTGTGACTGATATGCTCCAATGGCCTCATAGGATTGTCGTT CCACTTGGTGGTATACCTGTTGATACCAGGTAAATATGAATTTTATTGAAGTTTATACCTTTGGTTTCATTTCTTTCTGA TTGCTAATGGAAACATGACTTGCTATGTTACAATATCTCAGTCACAAAATTTTCATGAGTTTGAATTTGTGTTAGTATTC AAAAAGTTTGATCTCTCAATCACCATTTGAGCAGCACCTTTTTTTTCTATCTTGCAGTGAACTGGAGCTTAAACCCCAGG GAAGCCTTAAAGTGGTTGTAGTGAAAGCAAATGATTTGAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTAGTT TTGTATATTCGACCCTTGTTTAAGGTTAAGACCAAGGTTATCGACAACAACTTGAATCCTACTTGGGATCAGACATTTGA ATTGATTGCAGAAGACAAGGAGACTCAGTCACTCACTCTTGAGGTTTTACCCTACAAATACTTTGCCTCCTTTTTATGCT GCTCTCTTCTACCTCCTTTCTTAGAGATATGTTTTGACATTTCGTTTTTACTAATATAACTATACTCATTACTTAGGAAA AATAATGAATTTTTTTTATTAAACTGTTTCGTGTAAGTTCAATATATGAAGATGAAAATATAGTTAATTACCTGGTTTTT GTTCTGATATTAATGTAATGATTAGAAGCATATTACATACTTCTTCCTGAGCATGATTACTTTTGTTTCTACGCTTTGAA CCTTCTAATTCTGATCCTAGAGCCATTTTTTTATGCAAACTAGATTTTCTTTGCAATACATACAAAGAAATCCTGTGAAT TTTCTCCCTAAAACTTAACATACAACTTTGTACTATAATTGACGTAATACGATGCTCATGACTCTTAGCGATGTTCACCA ACAACGGATCTATGTTGAGCATAGTAGGGGCAATTTCCCCTACAAGATTTTAATTTCTAATGATAGATTGATAGTGTATA TTGTATTATAACAAGTTAAGAACATAAAGTGTTTAATTTGATCAACCGGATATTGGAAATGCCCCCACGCTTTTATAATT TTGTTCTGATCCATACTTACTTTCCAATCTGTAAAGCAATAAGCCTGAGTAAGTGAGCCCATCAGTTTTATAGTATTATT TTCAAGGCAAATATTTATTTTATTTAATAGTTTTAATACCATTAGCAACAACAATAGTTTATATCACTCAGTGGGAAGGG GTGCCGGACACAATGGTTAAAAGTGACTGTTTGAACCTCTAGGTCGAGTGTTAGATTCCTAGGAGCTGCACTCTTGGGGA GACCTTTACCACACCCGGGTGGAATTGCGAGAGCAATTTAACACAACAACAAAAAAACAATAGTTTATATGTTCATATTG CCCCTACAACTTAAAATTCCTTGATCCATCACTGATGTTCATGACTCTTGAAACAGGTTTTTGATGAAGACATTGGGCAG GATAAGCGATTAGGGATAGTACAATTACCCCTTATTGGCCTGGAAGCAGAAACTGAAAAGGACATTGAGTTGAGGCTTCT GTCATCTCTTGATAGACTGAAGGTGAAAGATAAGAAGGACCGAGGAACTTTGACAATAAAGGTACATGCATTAAGCTGTA TGGATGGTGATTTACTATGAGGCTGTGCATATTATATATATATACACGGATGAAATCTATTGAATGAAAAGGCTTCTTTT ATGCACTTCAGGTTTTCAGTTCTTGCTACCATTTAGTCATTTACACTTTTTGAGCTTGATTGCAAGTTATAATGAGGTTG GAATTTCAGGTCTTTTATCATCAGTTTAACAAGGAAGAGCAGTTGGCTGCACTTGAAGCAGAAAAACTGATATTAGAAGA AAGGAAGAAACTCAAAGCAGCTGGAGTCATAGGAAGCACGATGGACGCGGTAGGGTCCGGTGTTGGACTGGTTGGTACCG GTGTGCTTGCTGGCGCTGGGCTCGTGGGGACCGGCATCGGTGCTGGAGCCGGGCTGGTGGGGAGCGGCATTGGCGCGGGA GCCGGGTTTGTTGGGAGCGGTCTCGGAGCCTTTGGTAGCGGACTGAGCAAGGCGGGGAAGTTCATGGGAAGGACAATCAC GGGAAGTCATAGTGCCTCCAGGAGGAGTGGTTCTTCTACTCCAGTCCATAATGCACAGGAGAATGGTGGTGGTGCAAAGC CTCTC
CDS sequence (LotjaGi3g1v0430200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTGCTTTCTGGGATGTTTATGGGGATACTGTTCGGCATAGCATTGATGGCAGCATGGGAGCGGATGATGAGGTA CCGAAGCGCCAAGAGAATTGCAAAGGCAGCTGACATTAAACTCCTTGGATCCCTGAACAGAGACGATTTAAAGAAAATTT GTGGTGATAATCTTCCTGAGTGGATATCTTTTCCTGTATATGAGCAGGTGAAATGGTTAAACAAGATGCTGAGCAAACTT TGGCCATTTGTGGCAGAAGCAGCAACACTGGTGATCAGGGAATCTGTTGAACCACTGCTAGAAGAGTACAGACCTCCTGG AATTACTTCATTGAAGTTCAGCAAGCTGTCACTTGGAAATGTGGCTCCAAAAATTGAAGGTATTCGTGTGCAGAGTCTTA CCAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAGTATTATTTTGGCTGTTGAAGCCGCCATG GTTGCGTCGATCCCTATTCAGCTGAAAGATCTAAAGGTTTTCACCATTATCCGTGTTATATTCCAACTTGCTGAAGAGAT CCCTTGCATTTCTGCGGTTGTTGTTGCTCTACTTGCTGAGCCAAAGCCCAGGATTGATTATACTCTGAAAGCTGTTGGTG GAAGTTTGACGGCAATTCCTGGAATTTCAGATATGATTGATGATACTGTGAATACAATTGTGACTGATATGCTCCAATGG CCTCATAGGATTGTCGTTCCACTTGGTGGTATACCTGTTGATACCAGTGAACTGGAGCTTAAACCCCAGGGAAGCCTTAA AGTGGTTGTAGTGAAAGCAAATGATTTGAAGAATATGGAAATGATTGGAAAATCAGATCCTTATGTAGTTTTGTATATTC GACCCTTGTTTAAGGTTAAGACCAAGGTTATCGACAACAACTTGAATCCTACTTGGGATCAGACATTTGAATTGATTGCA GAAGACAAGGAGACTCAGTCACTCACTCTTGAGGTTTTTGATGAAGACATTGGGCAGGATAAGCGATTAGGGATAGTACA ATTACCCCTTATTGGCCTGGAAGCAGAAACTGAAAAGGACATTGAGTTGAGGCTTCTGTCATCTCTTGATAGACTGAAGG TGAAAGATAAGAAGGACCGAGGAACTTTGACAATAAAGGTTTTCAGTTCTTGCTACCATTTAGTCATTTACACTTTTTGA
Protein sequence (LotjaGi3g1v0430200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLSGMFMGILFGIALMAAWERMMRYRSAKRIAKAADIKLLGSLNRDDLKKICGDNLPEWISFPVYEQVKWLNKMLSKL WPFVAEAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLTKGQIIMDIDFRWGGDPSIILAVEAAM VASIPIQLKDLKVFTIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDMIDDTVNTIVTDMLQW PHRIVVPLGGIPVDTSELELKPQGSLKVVVVKANDLKNMEMIGKSDPYVVLYIRPLFKVKTKVIDNNLNPTWDQTFELIA EDKETQSLTLEVFDEDIGQDKRLGIVQLPLIGLEAETEKDIELRLLSSLDRLKVKDKKDRGTLTIKVFSSCYHLVIYTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 388 | 388 | 4.8E-259 | – | |
| PANTHER | 1 | 388 | 388 | 4.8E-259 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 2 | 21 | 20 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 399 | 374 | - | – | |
| ProSiteProfiles | 66 | 249 | 184 | 24.832 | ||
| Pfam | 68 | 248 | 181 | 1.0E-17 | ||
| ProSiteProfiles | 251 | 347 | 97 | 15.814 | ||
| Gene3D | 259 | 392 | 134 | 4.5E-29 | ||
| SUPERFAMILY | 262 | 387 | 126 | 3.87E-27 | – | |
| Pfam | 264 | 357 | 94 | 1.5E-21 | ||
| SMART | 265 | 362 | 98 | 9.6E-21 | ||
| CDD | 266 | 359 | 94 | 2.10757E-27 | – | |
| PRINTS | 281 | 293 | 13 | 2.3E-5 | ||
| PRINTS | 306 | 319 | 14 | 2.3E-5 | ||
| PRINTS | 328 | 336 | 9 | 2.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0430200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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