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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0431400 |
| Transcript ID | LotjaGi3g1v0431400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q84MA3|PP345_ARATH Pentatricopeptide repeat-containing protein At4g32430, mitochondrial; TrEMBL-Plants: tr|K7KCD2|K7KCD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0431400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84306045..84309932) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAACCCATTGATTTTAAGCGGACAAATTTTTTTTTTAAAAAAAAAATAGTATCTTTTTCGCGTTTGTTTTGGTGTTT TTGTTTGCTTCTACTTTCTGCCCAGGCTTCACTACACAAGCCCATCATCCTTCACGGGCCTAATTCAAATTTGTTTGTTT CCTGAAATCCCTATCACTCTTCTGTTAATTATGCTGTAAGTGTCAATTTTCGATTGGTCCCAAATCCGAAAGCATCGTAT ACATGTTTGTTTGCACAAGACATGTTATTGAACTCTGTTGTGCTCAGTAATAATAGCTTATGACTTAGTTTTCATAAATC TTGTCTTGTTTCCCATGGTATACTTTCTACCATCTTTCAAAACACTCCATAATGCACCATTACAACGATTATTCCAAACA GGGTCCAAATTATTCCACTCACTCAACCATGAACACCACCTGTTCGATCAAATTCCCCACCCAAATGCTGCCTCAGTCAA CACTGCCATCTCTGATCTTTTGCACAAAAACCTTCCATTTCAAGCTCTTAAGCAGTTTCAGTTGCATTCTATTGAAAATG TTGATGAGGATACACTTGCCCTGTCTCTCAAGGCTTGCCAAGGAGAGTTAAAACTCGGGCGCCAAATTCATGGATTTTCG GTGTCTACAGGGTTTGCTTCCCGCGTCAAGGTGTTGAATTCACTGATGAAAATGTACTGCGTGTCCGGGAATTTTGCTAG TGCTTTGTGTATCTTTGAGAAGAATTTGAGTTGTCCTGACATAGTTTCTTGGAATACTATCCTTTCAGGGTTTGAGAGGA GCGTGGATGCTTTGAATTTCGCACGTTCTATGCATTTCAATGGGATAGTTTTTGATCCTGTGACATACACTTCTGCTCTC GCCTTTTGTTGGGATGATTGTGGGTTTTTGTTTGGGTGGCAATTGCACTCGCTTGTGCTTAAATATGGATTTGGTGGCGA AGTTTTTGTAGGGAATGCACTTATAACTATGTATTCAAGGTGGGGGGCATTAGATGAGGCGGGAAGAGTGTTCGGTGAAA TGCCCAAACGAGATTCAGTTTCGTGGAATGCGATGCTTTCGGGCTATGCACAAGAAGGAGAATGTTATGGGCTGGAAGCA GTTTCATTGTTTATCAACATGGTTAGACAAGGTATGTTGCGTGACCATGTTCCTTTTACAGGTGCAGTTTCAGCTTGTGG TTATATGAGAAACTTAGAACTAGGGAGGCAAATACATGGTTTGGCCCAAAAGTTGGGGTATGGGACACATGTTTCAGTTT GCAATGTTTTGATATCGACTTATTCAAAATGTGAGGTCCTTCGAGATGCAAAGACAGTTTTTCAGATCATGAGTAATCGA AATGTAGTGTCTTGGACAACAATGATCTCTATCGATAAAGAAGAGGCAGTGTCTCTCTTCAATGCCATGAGAATTGATGG TGTATATCCAAATGATGTTACATTTATAGGATTAATACATGCAATAACAATCAGGAATCTGGTGGCTGAAGGTCTAATGG TTCATGGGTTATTCATAAAAAGCTGCTTTTTATCAAAACAAAATGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTT GAGTCCATTGAAGAATCAAAGAAGATTTTTGAGGAGCTTAACTATCGTGAAACAATATCGTGGAATGCATTAATTTCAGG GTATGCTCAAAATGGCTTGTCTAAAGAAGCACTCCTTACATTTTTGTCTGCAATAAAGGAGATAAAGCCGAGCCAACACA CATTTGGTAGTGTCTTAAATGCCATTGCTGCAGCTGAAGATATTTCTCTGAAACATGGGCTACGTTGCCATTCCCAATTG CTAAAACTTGGTTTAAACACTGACCCAATTGTTGCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAGCATAAGTGA GTCCCAAAGAGTATTTGATGAGACACCTGATAGAACTCATTTTGCTTGGACTGCAATAATATCTGCATATGCCCGCCATG GAGACTATGAGTCAGTGATGAGTTTGTATAAGGAAATGGAAAGCAAAGGAAGCATTCCCGACTCAATCACTTTCCTTTCA GTTTTAACTGCATGTTGTAGGAAGGGCATGGTTGATGCTGGTCATGAGGTCTTTGATTCTATGGTAAAAAAATATTCAAT TGAACCAACACATGAGCATTACTCTATCATGGTGGACATGCTGGGGCGTGTGGGACAACTAGATGATGCAGAAGAATTGA TGCATCAGATTCCAGGTGGACCTGGTTTGTCAGTGTTGCAAAGCCTGCTTGGGTCTTGTAGACTACATGGGAATATAGAG ATGGCTGAGAAGGTTGTTGATAGATTGATAGAAATGGATCCTGCGAGTTCAGGTCCTTATGTGTTGATGGCAAACTTGTA TGCTGATAAAGAGAAATGGGAGAAAGTTGCTGAAGTGAGAAAAAAAATGAGAGGAAAGGGAGTAAAGAAGGAAGTGGGAT TTAGTTGGGTAGATGTTGCTAATGTTGATTCCTTGCAGTTGCATGGTTTCTCCTCTGGGGATAAGTCACACACACAGTCT GAGACTATATGTAGAATGGCAGAGTTTCTAGGATTGCAAATGAGATTTTCTAAAGAGTGCGGAGATGAGAGAGGAGATTG GTATCAGGAGTTCGCACTCATGGGATATGGATAGCTAATATGATCACGTTCATTCAAAAACGGAGTTAAATTGATTATCC TTTTCTTCATTTATACGTTGAATTATGCTCTATTTGCTTGTTAGAAAAATGTTTTTTTTTTCTTTTCAAATTGAGTGCTG CTTAGAGATGTCACAAAAACCCACCCCGCGGGGCCCGACCTAAACCCAACCCGAAATTTCGGGCGAAACCCAATTTCTTT GGATGCGGGTTAGGTTTGGGTTTCACCCGAATTATAAAACCTATTTGGGTTCGGGTGTCGGATTGATTAAACCCGCACCC AAACCCGAAGTCTTATGCATGTAATTACCAACCCTTATATATATTATTAAAGTTACTAATAAGTAGGGTTTTCTTTAATT AGACATTTAGAATTCCGATGCTTATAAATCTATGAATTATGTTGTTTATAAGCTTATGTTCATGAACTATATTTTTCCTT TGTATTTGAAAGATGATGAAGTTTAATCTGCTTATGTTCATGTTGTTCTCTTATGCAAAAGTTGTTTCCGGGTCGGATTT TTGGATTTTTTTTGCGGGTTCGGTGCTCACATCGGGTTTTGGGTTTGAGTTTGGGTAACCCGAAAACCAGGGGGTTGTGT TTAACTTTTGCACCCACATTGGGTTTGGGTGTTAAGTTTGAGTTTGGGTGTAGAAATGACTAAACCCGCACTCACGGGGC CCGTTGTCAACCCTAGTGCTGCTAAATCGTATAAGAAACTTATTGAAATAAGTTTTAAATAGGTTAAAATCTTATTCGCA AATAGCTTGTGGCACCTGGAAAAGTGGCAGTTGAGGATTGCCGTTGAAGCATTTAGTGGTCGTGGGAGGCCACCAATAAT TGTCCACATAAAATTACTTTTTTTAGCGGGTTGTAATTTCAAAATGAAGTTGTAAATCAATTTTTTTTTGCACTGGAAAG ATAAATTACACCATTCAGGAATTGATCTCTGGACCATCCCCTCCTTAACTCAGATATCAAATTACTTAAACTGATAATTT TTTTTTGATACATCGGAAAGATAAATTGCACCTGTCAGGAATCGATCCTTGGATCTCTCCTACCCAACTCATATGTCCCC AAACTCCTAGTACTTGAGCTATCCTACGAGGACTAAACTGATAAATTTAGTTTTGAAATATAAAATATTTATTGATTTTT ATAAAAAAATTAAAATATATAGGGTTTAGAATTAAAAAAAGATCTCAT
CDS sequence (LotjaGi3g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATACTTTCTACCATCTTTCAAAACACTCCATAATGCACCATTACAACGATTATTCCAAACAGGGTCCAAATTATT CCACTCACTCAACCATGAACACCACCTGTTCGATCAAATTCCCCACCCAAATGCTGCCTCAGTCAACACTGCCATCTCTG ATCTTTTGCACAAAAACCTTCCATTTCAAGCTCTTAAGCAGTTTCAGTTGCATTCTATTGAAAATGTTGATGAGGATACA CTTGCCCTGTCTCTCAAGGCTTGCCAAGGAGAGTTAAAACTCGGGCGCCAAATTCATGGATTTTCGGTGTCTACAGGGTT TGCTTCCCGCGTCAAGGTGTTGAATTCACTGATGAAAATGTACTGCGTGTCCGGGAATTTTGCTAGTGCTTTGTGTATCT TTGAGAAGAATTTGAGTTGTCCTGACATAGTTTCTTGGAATACTATCCTTTCAGGGTTTGAGAGGAGCGTGGATGCTTTG AATTTCGCACGTTCTATGCATTTCAATGGGATAGTTTTTGATCCTGTGACATACACTTCTGCTCTCGCCTTTTGTTGGGA TGATTGTGGGTTTTTGTTTGGGTGGCAATTGCACTCGCTTGTGCTTAAATATGGATTTGGTGGCGAAGTTTTTGTAGGGA ATGCACTTATAACTATGTATTCAAGGTGGGGGGCATTAGATGAGGCGGGAAGAGTGTTCGGTGAAATGCCCAAACGAGAT TCAGTTTCGTGGAATGCGATGCTTTCGGGCTATGCACAAGAAGGAGAATGTTATGGGCTGGAAGCAGTTTCATTGTTTAT CAACATGGTTAGACAAGGTATGTTGCGTGACCATGTTCCTTTTACAGGTGCAGTTTCAGCTTGTGGTTATATGAGAAACT TAGAACTAGGGAGGCAAATACATGGTTTGGCCCAAAAGTTGGGGTATGGGACACATGTTTCAGTTTGCAATGTTTTGATA TCGACTTATTCAAAATGTGAGGTCCTTCGAGATGCAAAGACAGTTTTTCAGATCATGAGTAATCGAAATGTAGTGTCTTG GACAACAATGATCTCTATCGATAAAGAAGAGGCAGTGTCTCTCTTCAATGCCATGAGAATTGATGGTGTATATCCAAATG ATGTTACATTTATAGGATTAATACATGCAATAACAATCAGGAATCTGGTGGCTGAAGGTCTAATGGTTCATGGGTTATTC ATAAAAAGCTGCTTTTTATCAAAACAAAATGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTTGAGTCCATTGAAGA ATCAAAGAAGATTTTTGAGGAGCTTAACTATCGTGAAACAATATCGTGGAATGCATTAATTTCAGGGTATGCTCAAAATG GCTTGTCTAAAGAAGCACTCCTTACATTTTTGTCTGCAATAAAGGAGATAAAGCCGAGCCAACACACATTTGGTAGTGTC TTAAATGCCATTGCTGCAGCTGAAGATATTTCTCTGAAACATGGGCTACGTTGCCATTCCCAATTGCTAAAACTTGGTTT AAACACTGACCCAATTGTTGCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAGCATAAGTGAGTCCCAAAGAGTAT TTGATGAGACACCTGATAGAACTCATTTTGCTTGGACTGCAATAATATCTGCATATGCCCGCCATGGAGACTATGAGTCA GTGATGAGTTTGTATAAGGAAATGGAAAGCAAAGGAAGCATTCCCGACTCAATCACTTTCCTTTCAGTTTTAACTGCATG TTGTAGGAAGGGCATGGTTGATGCTGGTCATGAGGTCTTTGATTCTATGGTAAAAAAATATTCAATTGAACCAACACATG AGCATTACTCTATCATGGTGGACATGCTGGGGCGTGTGGGACAACTAGATGATGCAGAAGAATTGATGCATCAGATTCCA GGTGGACCTGGTTTGTCAGTGTTGCAAAGCCTGCTTGGGTCTTGTAGACTACATGGGAATATAGAGATGGCTGAGAAGGT TGTTGATAGATTGATAGAAATGGATCCTGCGAGTTCAGGTCCTTATGTGTTGATGGCAAACTTGTATGCTGATAAAGAGA AATGGGAGAAAGTTGCTGAAGTGAGAAAAAAAATGAGAGGAAAGGGAGTAAAGAAGGAAGTGGGATTTAGTTGGGTAGAT GTTGCTAATGTTGATTCCTTGCAGTTGCATGGTTTCTCCTCTGGGGATAAGTCACACACACAGTCTGAGACTATATGTAG AATGGCAGAGTTTCTAGGATTGCAAATGAGATTTTCTAAAGAGTGCGGAGATGAGAGAGGAGATTGGTATCAGGAGTTCG CACTCATGGGATATGGATAG
Protein sequence (LotjaGi3g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYFLPSFKTLHNAPLQRLFQTGSKLFHSLNHEHHLFDQIPHPNAASVNTAISDLLHKNLPFQALKQFQLHSIENVDEDT LALSLKACQGELKLGRQIHGFSVSTGFASRVKVLNSLMKMYCVSGNFASALCIFEKNLSCPDIVSWNTILSGFERSVDAL NFARSMHFNGIVFDPVTYTSALAFCWDDCGFLFGWQLHSLVLKYGFGGEVFVGNALITMYSRWGALDEAGRVFGEMPKRD SVSWNAMLSGYAQEGECYGLEAVSLFINMVRQGMLRDHVPFTGAVSACGYMRNLELGRQIHGLAQKLGYGTHVSVCNVLI STYSKCEVLRDAKTVFQIMSNRNVVSWTTMISIDKEEAVSLFNAMRIDGVYPNDVTFIGLIHAITIRNLVAEGLMVHGLF IKSCFLSKQNVSNSLITMYAKFESIEESKKIFEELNYRETISWNALISGYAQNGLSKEALLTFLSAIKEIKPSQHTFGSV LNAIAAAEDISLKHGLRCHSQLLKLGLNTDPIVAGALLDMYGKRGSISESQRVFDETPDRTHFAWTAIISAYARHGDYES VMSLYKEMESKGSIPDSITFLSVLTACCRKGMVDAGHEVFDSMVKKYSIEPTHEHYSIMVDMLGRVGQLDDAEELMHQIP GGPGLSVLQSLLGSCRLHGNIEMAEKVVDRLIEMDPASSGPYVLMANLYADKEKWEKVAEVRKKMRGKGVKKEVGFSWVD VANVDSLQLHGFSSGDKSHTQSETICRMAEFLGLQMRFSKECGDERGDWYQEFALMGYG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 192 | 173 | 4.0E-13 | ||
| PANTHER | 32 | 186 | 155 | 1.2E-126 | – | |
| ProSiteProfiles | 110 | 145 | 36 | 6.401 | ||
| Pfam | 115 | 136 | 22 | 0.54 | ||
| Gene3D | 194 | 292 | 99 | 4.6E-15 | ||
| PANTHER | 195 | 300 | 106 | 1.2E-126 | – | |
| ProSiteProfiles | 209 | 239 | 31 | 7.914 | ||
| Pfam | 214 | 239 | 26 | 0.0036 | ||
| ProSiteProfiles | 240 | 276 | 37 | 10.358 | ||
| Pfam | 242 | 273 | 32 | 0.0065 | ||
| ProSiteProfiles | 277 | 311 | 35 | 5.031 | ||
| Gene3D | 293 | 407 | 115 | 6.5E-11 | ||
| PANTHER | 295 | 395 | 101 | 1.2E-126 | – | |
| ProSiteProfiles | 312 | 346 | 35 | 8.079 | ||
| Pfam | 315 | 343 | 29 | 0.58 | ||
| PANTHER | 404 | 500 | 97 | 1.2E-126 | – | |
| Gene3D | 408 | 494 | 87 | 1.5E-11 | ||
| ProSiteProfiles | 408 | 438 | 31 | 5.996 | ||
| Pfam | 413 | 435 | 23 | 0.29 | ||
| ProSiteProfiles | 439 | 469 | 31 | 7.826 | ||
| Pfam | 441 | 463 | 23 | 1.1E-4 | ||
| ProSiteProfiles | 473 | 509 | 37 | 5.459 | ||
| PANTHER | 494 | 705 | 212 | 1.2E-126 | – | |
| SUPERFAMILY | 503 | 678 | 176 | 8.29E-7 | ||
| ProSiteProfiles | 510 | 540 | 31 | 7.07 | ||
| Gene3D | 515 | 750 | 236 | 2.6E-39 | ||
| ProSiteProfiles | 541 | 575 | 35 | 11.893 | ||
| Pfam | 543 | 589 | 47 | 3.2E-11 | ||
| TIGRFAM | 544 | 576 | 33 | 2.7E-8 | ||
| ProSiteProfiles | 576 | 606 | 31 | 9.865 | ||
| TIGRFAM | 578 | 612 | 35 | 8.4E-6 | ||
| ProSiteProfiles | 612 | 642 | 31 | 7.147 | ||
| Pfam | 615 | 638 | 24 | 0.051 | ||
| ProSiteProfiles | 644 | 674 | 31 | 5.448 | ||
| ProSiteProfiles | 678 | 712 | 35 | 7.673 | ||
| Pfam | 682 | 710 | 29 | 0.92 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0431400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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