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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0431800 |
| Transcript ID | LotjaGi3g1v0431800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42948|DAPA_TOBAC 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|A0A151TBN5|A0A151TBN5_CAJCA 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi3g1v0431800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84332903..84335034) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGAAAATACTACATTTGGTCAATTTTGGTGTGTAATCCAACATTTTCCATTCATAAATATATAAGGAATATTAATAT TCTCATCGATTTGATTATATATAAGTCAGTCATCGCACCTCTGTCTCCATACAAACCCTATCGCTTCTTCCTCTCTGACT CTTCCTACTCATCCCCTGCACAACCATCGTTGTTTTCACGATCCAATGACACTCTCAGAGGCCAAAATAAGGTCAATTTG AATCATGAACATGTTTCTCAATTTCAATTTATTAACATCATTCATTCTAATCACTTATTTTGAATAATATGCACTTATTT GTTATCTGTATGCAAATATTGTTAGAATTTTCCCATAATTGAAAATCTGTGACACAAGCATCAAGCTCTATTATTAAATC TGAATATTTCATCTACATACATCTCTATCTTAAATCTGAATATCACTTTTTTGTTTTTGTTTTTGGTTTACAAATCTGAA TTTGTTGTCCAATTTTTTGCAATTATGTTGCAAACATCATTAGATCAATCTATAAAAATTAAGATTAATTGTGTAATGGA AACTTGTTGAAGAAAATTAAGATTCATTGATGTATAATCTATGTACAGGGCTTTGATTGAGGAAGTAAGGGGTCTGAGAT TGATAACTGCTGTGAAAACTCCATACCTCCCCAATGGCCAAATTGATCTTGATGCATATGATGACTTGGTGAACATCCAG ATTGCGCACGGCATTGATGCCATTCTTGTTGGTGGAACGACCGGTGAAGGCCAATTGATGACTGTGGGTGAAAAAGTTAT GCTCATCGGTCACACGGTTCACCAATTTGGCGATAAAGTGAAGGTGATTGGTAATGCCGGGAGCAACTCCACGGCACAGG CAATTAGTATCTCGGAACAGGGTTTTGCTGTTGGAATGCATGCTGCTCTTCATATTAACCCTTACTATGGCAGAACCTCG ATGGATGGTTTGGTTGCTCACTATAATGCTGTGCTTGACATAGGCCCTGTGATCATATATAACATACCACAAAGGACTGC TCAGGATATTCCTCCTAGTGTGGTGGAAATCTTGGAAAAACATCCTAACCTGGTTGGTATCAAAGAGTATGGGTCTAATG AGAGGGTGAAATTGTATGCTGATAAAGGAATGGTTGTGTGGACTTCAAATGAAAAAGAATGCCATGATGGTAGGTGGGAA TGTGGTGCTGTTGGGGACATGTCTGTTGTCAGCAACCTGGTTCCTAGTTTAATGAAGGAACTCATGCATGGAGGCAAGAA TCCAGAATTGAATGCAAGGCTTTTGCCTTTGTTTGATTGGCTTATGCTTGAGCCAACCCCAATTGCTTTGAACACTGCTC TTATGCAACTTGGGGTTGTCAAGCCAGTTTTTAGGCTACCATTTGTGCCTCTCCCTAAGGCAAGAAGGGTGGAGTTTGTC AATTTGGTGAAGGACATGGGCAGAGAGCATTTTGTTGGGGAAAAAGATGTTCAAGTTCTTGAAGACAGTGACTTTATCAT AGTTAGTCGATATTAATCAATCCTGTGTGAGGACAGGTTACTATTTATTTATGTTGGGGTTTCTGTGTATTTTATTTTCT AAGGCATGCCAAAGTTCAAGAATAATGTTCCCACATATTACAAAATAAGTATGTAAGTAATTTCACAATAACACCATTTG CTAGTAAATGCAGAGGTGATTTCAGTGTTTATGCTTATCCAACTATTTTAGTGTAAAATAGTTGGAAACTTAAAATGTGA ATCTACTTATTCTGCTTCTGTTATCTATCATCTACTGTTCTATAAATTGTGATTGCATTTTCTATTCAGAATACAGAACT CTAAGCTAAACAAGCAAATAATGATTAGTAAATTTGGATACAAGAGACAACAGGAAATGGAGCTTTTGGAAAATAAAATT AACCATATATTGATGGTATTATCCACTCAAGATGCATAGTATTTGGCTAAACACCTTGGACAAGTGTTATCTAGATCCTA GATGAAGCACCCTGCAACTGCACATCCTAAATTGTGAAATAACTTCCATCACATTTACTAAATTAGAGCTACCACTGCAA GATAAGGTACCATGTAATTGTTATAGTTACTTTAAAGCATCATTCAAAAACA
CDS sequence (LotjaGi3g1v0431800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACTCTCAGAGGCCAAAATAAGGGCTTTGATTGAGGAAGTAAGGGGTCTGAGATTGATAACTGCTGTGAAAACTCC ATACCTCCCCAATGGCCAAATTGATCTTGATGCATATGATGACTTGGTGAACATCCAGATTGCGCACGGCATTGATGCCA TTCTTGTTGGTGGAACGACCGGTGAAGGCCAATTGATGACTGTGGGTGAAAAAGTTATGCTCATCGGTCACACGGTTCAC CAATTTGGCGATAAAGTGAAGGTGATTGGTAATGCCGGGAGCAACTCCACGGCACAGGCAATTAGTATCTCGGAACAGGG TTTTGCTGTTGGAATGCATGCTGCTCTTCATATTAACCCTTACTATGGCAGAACCTCGATGGATGGTTTGGTTGCTCACT ATAATGCTGTGCTTGACATAGGCCCTGTGATCATATATAACATACCACAAAGGACTGCTCAGGATATTCCTCCTAGTGTG GTGGAAATCTTGGAAAAACATCCTAACCTGGTTGGTATCAAAGAGTATGGGTCTAATGAGAGGGTGAAATTGTATGCTGA TAAAGGAATGGTTGTGTGGACTTCAAATGAAAAAGAATGCCATGATGGTAGGTGGGAATGTGGTGCTGTTGGGGACATGT CTGTTGTCAGCAACCTGGTTCCTAGTTTAATGAAGGAACTCATGCATGGAGGCAAGAATCCAGAATTGAATGCAAGGCTT TTGCCTTTGTTTGATTGGCTTATGCTTGAGCCAACCCCAATTGCTTTGAACACTGCTCTTATGCAACTTGGGGTTGTCAA GCCAGTTTTTAGGCTACCATTTGTGCCTCTCCCTAAGGCAAGAAGGGTGGAGTTTGTCAATTTGGTGAAGGACATGGGCA GAGAGCATTTTGTTGGGGAAAAAGATGTTCAAGTTCTTGAAGACAGTGACTTTATCATAGTTAGTCGATATTAA
Protein sequence (LotjaGi3g1v0431800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLSEAKIRALIEEVRGLRLITAVKTPYLPNGQIDLDAYDDLVNIQIAHGIDAILVGGTTGEGQLMTVGEKVMLIGHTVH QFGDKVKVIGNAGSNSTAQAISISEQGFAVGMHAALHINPYYGRTSMDGLVAHYNAVLDIGPVIIYNIPQRTAQDIPPSV VEILEKHPNLVGIKEYGSNERVKLYADKGMVVWTSNEKECHDGRWECGAVGDMSVVSNLVPSLMKELMHGGKNPELNARL LPLFDWLMLEPTPIALNTALMQLGVVKPVFRLPFVPLPKARRVEFVNLVKDMGREHFVGEKDVQVLEDSDFIIVSRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 311 | 309 | 5.3E-172 | – | |
| PANTHER | 3 | 311 | 309 | 5.3E-172 | ||
| Gene3D | 12 | 317 | 306 | 2.3E-104 | ||
| PIRSF | 13 | 304 | 292 | 2.7E-95 | ||
| SMART | 16 | 293 | 278 | 2.5E-61 | ||
| CDD | 19 | 289 | 271 | 2.44662E-95 | ||
| Pfam | 19 | 290 | 272 | 5.3E-74 | ||
| SUPERFAMILY | 20 | 293 | 274 | 2.62E-60 | – | |
| PRINTS | 50 | 71 | 22 | 3.4E-31 | ||
| ProSitePatterns | 53 | 70 | 18 | - | ||
| PRINTS | 86 | 104 | 19 | 3.4E-31 | ||
| PRINTS | 118 | 134 | 17 | 3.4E-31 | ||
| PRINTS | 141 | 158 | 18 | 3.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 4-hydroxy-tetrahydrodipicolinate synthase | Catalysis of the reaction: pyruvate + L-aspartate-4-semialdehyde = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O. | ||
| Biological process | Lysine biosynthetic process via diaminopimelate | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. |
Expression pattern of LotjaGi3g1v0431800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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