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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0432100 |
| Transcript ID | LotjaGi3g1v0432100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT hook motif DNA-binding family protein; TAIR: AT2G45430.1 AT-hook motif nuclear-localized protein 22; Swiss-Prot: sp|O22130|AHL22_ARATH AT-hook motif nuclear-localized protein 22; TrEMBL-Plants: tr|A0A072TPA5|A0A072TPA5_MEDTR AT hook motif DNA-binding family protein; Found in the gene: LotjaGi3g1v0432100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84348433..84349356) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATCAAGTAACAGCACAAGGGCGTCCTCTTCCTCCTCCTTTTCTCACCAGAGACCTCCACCTACACCCTCACCACCA GTTTCAATCCCTTCACAACCACCAAAACAATGAAGATGAACAGCAAAGCGGCAATGGCAACTTGACCCGCGGCCAGAAGC GAGATCGCGGCGACGACAACGCCGCCACCACTCCCACGGGTGCTGATGTGAAAGATGAGGGCGGCAGTGGTAGCGGCAGC GGAGAAATTTCAAGAAGACCAAGAGGAAGGCCTGCTGGTTCCAAGAATAAGCCCAAGCCGCCCATTATCATTACTAGAGA TAGCGCCAACGCTCTCCGATCTCATGTCATGGAGGTCGCCAACGGCTGCGACATCATGGAGAGCGTGACGGTCTTCGCCC GGAGGAGGCAGCGTGGAGTGTGCATCCTTTCTGGGAGCGGCACAGTCACCAACGTCACGCTCCGGCAGCCGGCTTCTCCG GGTGCGGTCGTCACGCTCCATGGAAGGTTCGAGATTCTCTCCCTGTCAGGGTCTTTCCTGCCGCCGCCAGCTCCACCGGC TGCGTCTGGCCTGGCCATATACCTGGCCGGGGGGCAGGGGCAGGTGGTCGGCGGCAGCGTGGTGGGACCTTTGCTGGCCT CAGGTCCTGTGGTCATCATGGCTGCTTCCTTTGGAAATGCTGCTTATGAAAGACTGCCCTTGGAGGATGAGGAAACCCCA GCTACCGTTACGGGTAGCGGAGGATTAGGGTCACCAGGGATTATGGGAACCCCGCAGCAACAACCGCAATCGCAACCACA ACAGCAACAACTCATGCCGGATCCTAATGCTTCACTCTTCCATGGAGTGCCTCAAAATCTTCTCAATTCATGCCAATTAC CATCTGAGGGTTATTGGAATGGCAGTGCTCGCCCACCTTTTTAA
CDS sequence (LotjaGi3g1v0432100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAAGTAACAGCACAAGGGCGTCCTCTTCCTCCTCCTTTTCTCACCAGAGACCTCCACCTACACCCTCACCACCA GTTTCAATCCCTTCACAACCACCAAAACAATGAAGATGAACAGCAAAGCGGCAATGGCAACTTGACCCGCGGCCAGAAGC GAGATCGCGGCGACGACAACGCCGCCACCACTCCCACGGGTGCTGATGTGAAAGATGAGGGCGGCAGTGGTAGCGGCAGC GGAGAAATTTCAAGAAGACCAAGAGGAAGGCCTGCTGGTTCCAAGAATAAGCCCAAGCCGCCCATTATCATTACTAGAGA TAGCGCCAACGCTCTCCGATCTCATGTCATGGAGGTCGCCAACGGCTGCGACATCATGGAGAGCGTGACGGTCTTCGCCC GGAGGAGGCAGCGTGGAGTGTGCATCCTTTCTGGGAGCGGCACAGTCACCAACGTCACGCTCCGGCAGCCGGCTTCTCCG GGTGCGGTCGTCACGCTCCATGGAAGGTTCGAGATTCTCTCCCTGTCAGGGTCTTTCCTGCCGCCGCCAGCTCCACCGGC TGCGTCTGGCCTGGCCATATACCTGGCCGGGGGGCAGGGGCAGGTGGTCGGCGGCAGCGTGGTGGGACCTTTGCTGGCCT CAGGTCCTGTGGTCATCATGGCTGCTTCCTTTGGAAATGCTGCTTATGAAAGACTGCCCTTGGAGGATGAGGAAACCCCA GCTACCGTTACGGGTAGCGGAGGATTAGGGTCACCAGGGATTATGGGAACCCCGCAGCAACAACCGCAATCGCAACCACA ACAGCAACAACTCATGCCGGATCCTAATGCTTCACTCTTCCATGGAGTGCCTCAAAATCTTCTCAATTCATGCCAATTAC CATCTGAGGGTTATTGGAATGGCAGTGCTCGCCCACCTTTTTAA
Protein sequence (LotjaGi3g1v0432100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQVTAQGRPLPPPFLTRDLHLHPHHQFQSLHNHQNNEDEQQSGNGNLTRGQKRDRGDDNAATTPTGADVKDEGGSGSGS GEISRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASP GAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETP ATVTGSGGLGSPGIMGTPQQQPQSQPQQQQLMPDPNASLFHGVPQNLLNSCQLPSEGYWNGSARPPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 307 | 307 | 1.7E-136 | – | |
| MobiDBLite | 1 | 103 | 103 | - | – | |
| PANTHER | 1 | 307 | 307 | 1.7E-136 | ||
| PIRSF | 17 | 307 | 291 | 3.7E-108 | ||
| MobiDBLite | 29 | 50 | 22 | - | – | |
| SUPERFAMILY | 109 | 241 | 133 | 3.4E-34 | – | |
| ProSiteProfiles | 109 | 247 | 139 | 40.732 | ||
| Gene3D | 112 | 238 | 127 | 1.4E-8 | – | |
| Pfam | 113 | 225 | 113 | 9.8E-30 | ||
| CDD | 113 | 180 | 68 | 7.95046E-21 | ||
| MobiDBLite | 235 | 283 | 49 | - | – | |
| MobiDBLite | 253 | 275 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi3g1v0432100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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