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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0432900 |
| Transcript ID | LotjaGi3g1v0432900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G09220.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220, mitochondrial; TrEMBL-Plants: tr|A0A151QP38|A0A151QP38_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0432900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:84456858..84460798) extracted from Lotus japonicus Gifu genome v1.2.
CTGATATACTTGAAAAATAAAATATGGGTATATGTAGCTGTGTGTAATCACCCTTTTACTGCACATATCATGTCACACCT GAAGCTGAGGCATCAAGTTTCAGCTTGTGCTGCAGCCATAGTTCCCACCACCTTCACCACCACCACCACCATCTCTCACA AAACTCTCCACCCTATTGAATATCCTAAAGCCACACTTCCTCCATTCTCACCCAACCCCAAGCACCCACAACACTTGCTC TCCCTTCTCCTCAAAGACCCATCTCACCTCCAAGCTGTTCACCAAGTCCACTCTCACATCACCACCTCTGGCCTCTTCCA CCACCCTTTCCACAACACCTCAACCTCCTTACTTCTCTTCAACAATATCATCCGTTGCTACTCCCTCAGCCCCTTCCCCC ACCAAGCAATTCACTTCTCCATCCACACGCTCAACCACTCCAGCACCTTCTTCACGTACTCTTCCCTTGATACATTCACC TTCGCGTTCCTTTCGCAAGCCTGCGCCTACTCGAACTGCACCCGCTTCGGGATTCAGCTCCATGCACTCGTTTTCAAGGT GGGTTTTCAGTTTCATGTCTATGTTCAAACTGGGTTGCTGCAAATGTACTCCATTGGGGGCCTCTTAGTTGAAGCTGCCC AGGTGTTCGATGAAATGCCGCATAGAAGTACTGTCACTTGGAATGTTTTTATCAATGGGTTGGTTAAATGGGGTGAGGTT GAGCTTGCTCTTTCTGTGTTTGATCGAATGCGGGATCGGAGTGTGGTGTCGTGGACTCTTGTTATTGACGCATACACTCG CATGAATCAGCCTATGAAAGCTTTAGCTTTGTTTAGGAAAATGGTGGAAGTTGATGGTATAGAGCCTACTGAAGTTACCC TTTTGACTATTTTTCCAGCTATTGCGAACCTTGGTTATATTAAGCTATGCCAATCAGTTCATGGCTATGCAGAGAAAAGG GGGTTCAATGTCATTGATATACGCATTACTAATGCACTAATTGATCTGTATGCAAAGTGTGGGTGCATAGAAAGCGCGAG TAGATTTTTCCAGGAGATACCTGACTGGAGGAAGAATTTGGTTTCATGGAATTCACTTATATCTGGTTTTGCTATGAACG GGATGGCGAGGGAAGCTGTGGAGAATTTTGAAAACATGGAGAAGGCTGGGCTGAGGCCAAACCATGTGGCATTCCTGAGT GTTTTGAGTGCCTGCAGTCATGGAGGGTTGGTTGAGGAGGGGCTCAAGTTTTTCAACAAAATGGTGAATGATTGTCAAAT TGTGCCAGATATCAGGCACTATGGTTGTGTGGTGGATATGTTGGGGAGGGCTGGGAGGTTAGAAGAAGCTGAAAAGGTTG CTCTGCAGGTGCCTCATGAGGTTGCCAATGATGTAATATGGAGGACACTTCTGGGTGCTTGTAGTGTTCATAATAATGTT GAGATTGGACAGAGGGTGACTGAGAAAATACTGGAGATCGAAAAAGGACACGGTGGGGATTATGTTCTTATGTCTAATAT TTTTGTTGGTGTTGGGAGATATAAGGATGCTGAAAGATTAAGGGAAGTGATAGATGAGAGAATTGCCATTAAAATTCCTG GCTACAGTTTACTCTAAATGGTATATAAATAATAATGTTGGTGATACATTTGAAACAGATTGATCACTTTCTGCCTTTCT TGCTTGGAGAGAGGTGGTATTGAAACTGTGAACATCGGGGAAGTTCCCTTTTAGGGCCACTCATAACTAGGCCAAAGGCA TATATGCAGGGCACTGCTCTTTGCTTCAGATATTCTGGACGAGCTCAAATCATCAAATTGCGGTAACACTTATTGCCAAT TACTTTGTCCTTCGAGAAATCTTGTGTCCAGATGCACATGAAAAGCTAATAAATATTATTTAAACTTGTATAGATAAACA TTCTAAATATGATTTGTCCCAGAGCATCAGGTTCAATAAAAGAAATACGTCACACTGTAACAATGTTTGATATGCTTTGT AGGTTGTATCTGTAACTTATTCATCATGTAGTTTTAGATTTCAATATGCATTACACTAGTTTCCTTTTGATTTCCCAGTT CCCTGTCTTGATTTGGAGAATTTGAAAATGTTCTCTTTTTGAAGTTTGAACCCAACGCACGTTAAAACTGTTGAAAGAAA TTGCCCAGCTGTCAGTGTTTTATTTGTTTCATTTTATCTGTTTTAGATAGAGTCGAGAAGTTAAGTTTTCTGGTCTTTAG GAGTTAGTTGCTACATTCTGAAGGTTGTATCAGTCGTTTGTTCGTTTTTTTGTCACCGAACGCTGCCTCAGCCGGAGCTG GATATCGCATCATCGAGCGCTGTGTTCATCTTTGAAAGTAAGATTTTGGAGTGATGAAGAAGAAGCAAAGGGTTGTTGCA GAGGCTGATGCTGGTCAAGATTTGGATTCTGCGATTCATGAGCATGCCCTTTTCTTTGACAAATTGATAGACCTCATTAG TCATTCCTGCCAAGTTTTATCTGTCAACTGATGAGGACAAGCCATGGTTTCAGGGTCTGAGCAATGCTAAAAAAGCTGCG AAAAAGAAAGAAACTAAGGAAAATATTAAGAAGACTCAAACAGACCTTTGGACCCTGACAAACCTGCTACAACTACACTT GATCTGCTTAAGCAGAGCTTGGGAAAAGATAGAGAAAATGACAGTGATGGGGAGCAGGGTGTTGCTAAGCCTTTCATGTC AGGATCAGTAGTCAGTACCTATGAAGAACTTCGGCAAAGGCTTTATTGCAAGCTTGAAGAGTTCCGGTCAGGTCGCAACA GTGAAAATTCAGACAGGTCTAAGAAGATGGAAGAGAGAAATGTTAGGAGAGGATGTGATGGCAACAAACGCAAGAGGGAT ATGAGACTGATGAAAGTAAGCCTGCACCTGGTGAGTTGGTGGAGAAAGTGAAGGATTCTGCAGAGGCTTCCAAGGAGCTT GTGTTTGGCCAGGGTAAACTTCAAAATGAAGAAATACTAGGGAAGAAGTGAAAAGTTTCAAAGCAAAAGGAACTTGAAAT GGCTAAGAAGTTTGAGGGAGTGAAGCACAAAGATCCTGAGAAGGCTGAAGCTTTTGCTAAAAAGCAATCATGGAAAGCAG CAATGAATAGAGCTTCAGGGATTAAGGTCCATGGTGATCCCAAACTTATGCAGAAAAGCTTGAAGCAGGAGAAGAAGAAG CAGGAGAAAAACCCAGAGAAATGGAAGGAGAGAATTCAAACCAGGGACCAGTTGAAGGCAGGCAAGCAGCAAAAAAGGTC ACAAAATATAGCTGAGAGGATTCAGCAGAAGAAAATGAGAATTTTTTTATGCATTATTATTATACTGCTTACATAGAATT GGAGTGTTCCAAGTGTTTAGATTTCTTAAAACTTCATGTTATATTTTGGCAATTCTGCACCCCTCTTTTCTAGCATTTTG TTGAGCAATAATTATAAAAAAACTGACAGCTGGGCAATTTCTTTTAACAAAAACATGTTAAAAGCTTTTGCAACTTAGTT TGATTTATCTGATTGTGGAAAATGGGTCTGCGTTTCGACCAAGATTCTTTCTATAAGGCTTTCATTTGATAAGTGATAAT TCATGTCTCCTATCTCCTTATTTGCTCAACGAATTTGTTCAGAATATAAGACTTGCTAGTTAGAGATCTGTTCAAGTTAA GCAGTAAACAGTTTCAAACAGAGTAGCTTGGCAGTTGAAAAATACCTTGGAAACTTCATTTTCTTACAAATTTTAGAGTA CTGAAAAATCATTACTTTCTGTAATAACTACCTCTAAATAACAGTTTTCCCTAACAGTTGAACTCTGGGTGCCCATAGAT ATGTAGAAAAAAAACAAGCAAGTCTCAGCTTGAAAATTATAACCCTAACCTCTTAAGTCTATCTTTCTCTGATCATACAG GTAGTTAAACTGCTTGTTACC
CDS sequence (LotjaGi3g1v0432900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACACCTGAAGCTGAGGCATCAAGTTTCAGCTTGTGCTGCAGCCATAGTTCCCACCACCTTCACCACCACCACCAC CATCTCTCACAAAACTCTCCACCCTATTGAATATCCTAAAGCCACACTTCCTCCATTCTCACCCAACCCCAAGCACCCAC AACACTTGCTCTCCCTTCTCCTCAAAGACCCATCTCACCTCCAAGCTGTTCACCAAGTCCACTCTCACATCACCACCTCT GGCCTCTTCCACCACCCTTTCCACAACACCTCAACCTCCTTACTTCTCTTCAACAATATCATCCGTTGCTACTCCCTCAG CCCCTTCCCCCACCAAGCAATTCACTTCTCCATCCACACGCTCAACCACTCCAGCACCTTCTTCACGTACTCTTCCCTTG ATACATTCACCTTCGCGTTCCTTTCGCAAGCCTGCGCCTACTCGAACTGCACCCGCTTCGGGATTCAGCTCCATGCACTC GTTTTCAAGGTGGGTTTTCAGTTTCATGTCTATGTTCAAACTGGGTTGCTGCAAATGTACTCCATTGGGGGCCTCTTAGT TGAAGCTGCCCAGGTGTTCGATGAAATGCCGCATAGAAGTACTGTCACTTGGAATGTTTTTATCAATGGGTTGGTTAAAT GGGGTGAGGTTGAGCTTGCTCTTTCTGTGTTTGATCGAATGCGGGATCGGAGTGTGGTGTCGTGGACTCTTGTTATTGAC GCATACACTCGCATGAATCAGCCTATGAAAGCTTTAGCTTTGTTTAGGAAAATGGTGGAAGTTGATGGTATAGAGCCTAC TGAAGTTACCCTTTTGACTATTTTTCCAGCTATTGCGAACCTTGGTTATATTAAGCTATGCCAATCAGTTCATGGCTATG CAGAGAAAAGGGGGTTCAATGTCATTGATATACGCATTACTAATGCACTAATTGATCTGTATGCAAAGTGTGGGTGCATA GAAAGCGCGAGTAGATTTTTCCAGGAGATACCTGACTGGAGGAAGAATTTGGTTTCATGGAATTCACTTATATCTGGTTT TGCTATGAACGGGATGGCGAGGGAAGCTGTGGAGAATTTTGAAAACATGGAGAAGGCTGGGCTGAGGCCAAACCATGTGG CATTCCTGAGTGTTTTGAGTGCCTGCAGTCATGGAGGGTTGGTTGAGGAGGGGCTCAAGTTTTTCAACAAAATGGTGAAT GATTGTCAAATTGTGCCAGATATCAGGCACTATGGTTGTGTGGTGGATATGTTGGGGAGGGCTGGGAGGTTAGAAGAAGC TGAAAAGGTTGCTCTGCAGGTGCCTCATGAGGTTGCCAATGATGTAATATGGAGGACACTTCTGGGTGCTTGTAGTGTTC ATAATAATGTTGAGATTGGACAGAGGGTGACTGAGAAAATACTGGAGATCGAAAAAGGACACGGTGGGGATTATGTTCTT ATGTCTAATATTTTTGTTGGTGTTGGGAGATATAAGGATGCTGAAAGATTAAGGGAAGTGATAGATGAGAGAATTGCCAT TAAAATTCCTGGCTACAGTTTACTCTAA
Protein sequence (LotjaGi3g1v0432900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHLKLRHQVSACAAAIVPTTFTTTTTISHKTLHPIEYPKATLPPFSPNPKHPQHLLSLLLKDPSHLQAVHQVHSHITTS GLFHHPFHNTSTSLLLFNNIIRCYSLSPFPHQAIHFSIHTLNHSSTFFTYSSLDTFTFAFLSQACAYSNCTRFGIQLHAL VFKVGFQFHVYVQTGLLQMYSIGGLLVEAAQVFDEMPHRSTVTWNVFINGLVKWGEVELALSVFDRMRDRSVVSWTLVID AYTRMNQPMKALALFRKMVEVDGIEPTEVTLLTIFPAIANLGYIKLCQSVHGYAEKRGFNVIDIRITNALIDLYAKCGCI ESASRFFQEIPDWRKNLVSWNSLISGFAMNGMAREAVENFENMEKAGLRPNHVAFLSVLSACSHGGLVEEGLKFFNKMVN DCQIVPDIRHYGCVVDMLGRAGRLEEAEKVALQVPHEVANDVIWRTLLGACSVHNNVEIGQRVTEKILEIEKGHGGDYVL MSNIFVGVGRYKDAERLREVIDERIAIKIPGYSLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 10 | 18 | 9 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 515 | 492 | - | – | |
| PANTHER | 84 | 227 | 144 | 1.7E-80 | – | |
| Gene3D | 123 | 303 | 181 | 1.2E-23 | ||
| ProSiteProfiles | 169 | 199 | 31 | 6.171 | ||
| Pfam | 176 | 197 | 22 | 0.66 | ||
| ProSiteProfiles | 200 | 234 | 35 | 11.104 | ||
| TIGRFAM | 202 | 233 | 32 | 6.6E-9 | ||
| Pfam | 202 | 231 | 30 | 1.6E-7 | ||
| TIGRFAM | 233 | 267 | 35 | 7.4E-6 | ||
| Pfam | 233 | 260 | 28 | 2.1E-5 | ||
| ProSiteProfiles | 235 | 266 | 32 | 6.259 | ||
| PANTHER | 286 | 501 | 216 | 1.7E-80 | – | |
| ProSiteProfiles | 303 | 333 | 31 | 7.618 | ||
| Pfam | 308 | 330 | 23 | 0.0083 | ||
| Gene3D | 332 | 500 | 169 | 6.8E-30 | ||
| Pfam | 335 | 383 | 49 | 5.9E-11 | ||
| ProSiteProfiles | 336 | 370 | 35 | 12.353 | ||
| TIGRFAM | 338 | 371 | 34 | 3.2E-6 | ||
| ProSiteProfiles | 371 | 401 | 31 | 8.002 | ||
| TIGRFAM | 374 | 407 | 34 | 0.0014 | ||
| ProSiteProfiles | 407 | 437 | 31 | 7.125 | ||
| Pfam | 410 | 430 | 21 | 0.56 | ||
| ProSiteProfiles | 440 | 470 | 31 | 5.382 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0432900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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