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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0437500 |
| Transcript ID | LotjaGi3g1v0437500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G02130.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta'; TrEMBL-Plants: tr|A0A072UAU5|A0A072UAU5_MEDTR TPR protein; Found in the gene: LotjaGi3g1v0437500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85025925..85031485) extracted from Lotus japonicus Gifu genome v1.2.
GTTAGTTTAGTTGTTACTTGTCAGGCCAAAAAAGAAAAGGGCAAAAATGGGAGTTTCAGTTAGTTGAGGGACCAAATATA AAATTAAAACATAGGTTACAATCTCTGCTGACTCCCATCTCTCTCACTCCCATCAACCTCGGAGCTGCTGAAATCGCTTC CCCTGACTCCGACGAAGCCGTTCCAAACAACCGCAGCGAAACGAAGAAGAAGGGAGGTTCTTCCCCTTCCTGAACCCTTC AATTTCACTCTTCCGTTTCGGCTTCTTAGCTTCTTTTTTTTTTTTCAGGTTTTCAATTGGCACAGTTAGCTGAGACTGCT GGATTGTTAAGGTGAACGGTAATTAAGTGCTTATAAGTGCTTATCATAATTTAATTTCAAAAGCTTATTTAAATAAGCTC AAACTATAGTTTATAGCTAAGTATTAGTGTTTATTAACTGATATGGGCAGGCTCAAAATCGCTTATTAGTTTATACATAT TGGCTTATATAAAAAAAGCTTCCATAAATTTCTATAAACACTTGTATAAGTGATTATGCCACGAGTTCAAATAAGCTATT CCGAATGCAACTTTTCAGCTCTTTATAAGTTTATATTGATTGAAGGATTTTGTTAAAATTGTTGTTGCTTTACATTAGAC AATAATGTTAGCAGGCTATAAACAAGCAATCATATCTTTCTTTGAGAAATGTGAATTTGCGGTTCAATTTTTTTTGCTCA GGCTTCAAAATAATCCTTGCTCCGCTCCGCCTCTGCAACTACCTACTATGTTTCGCGTAGCGGCAAAGTTGTCAGCAAGG GCTTCCACTGCTTCTGCTGCCCTCAGGCCTTCTCCTCTTGCTGCTTCATTCTTCAGGTCATTCAACAATGGCTTGGAGTT GGACAAAGACATGGCAGTCCCTGATGCTGTTCGTATGATCAACTACGCAATGGAAAAAGCTAGGACTGACAAATCAGGTA TTTCTTGATGACTCCTTTGTGTTTTTTTTTTTTTTTTGCTATAGTTAACATCTTTTTGCTTTTTCCCTTAATTGGGTGTT TCTGTGAACACAGTTGGATCGTACGGTCTAGGTATGCTGGTGTTGAAGCATTGCGTTACAACTGAGTTAACCGAGGGCAA GGACCCACAACATGAGAATTCCAAAGGAATTGCTTTGCTTGCTTGGTCCACTTTGTTGTCTGAAAGGTTTTTTTTCATAA TCATTTAGTTTTATTTGTGTTCTAATACTCAATTTTGTGGATGATAGTTTATACTCATTGGAACTATGTTTTTCCTTAAT TTTTCTTAGAGGAGAGTACGGTGATGCAATTGAGAAGCTGCAGAGTGTTCAAGAATTGACCAATTCTTTCTTGGGTGTTA GAGGTTAATTCTTGTTACCCTTTTTATAGGTTATTGCATTTTCTGTGGTTTTATTTTATTTATTTCAATGATTTTGAGTT GTATCCTGGTTGTTGTAGTTGCTGCCTTTGAAGCCCAGGCTGGACTTCATCTCGAGTTGGGGCAGGTTTGTATATGCAAG TCATTTGTAAAATATTTGGCTAATTCTTTTCACAGAATCATTCATGTTTACTCAGATTTTCATATATAGGATGATATGGC ATCAGTAGTGGGGGATAAGTGCGTGGAGCTCATGGAAAAACAGAAAACGGAAGATTCTGAGGCTCTAAATGTTCGTGCTA AAGCACTAAAAGGGCTGATTGAACTTGCCAAGGGAAATATTGAGTCAGGTAGTGCTGAAGTCTATTTGTTCAATTGGTTG TTACAATTATTGATGTGTGCTAATTACATGCCTGGTGCAGCGGAAGCTTTCTTTGACAAATCTCTGCGCAGCAAGCTATG TGACGGTATCTTTCTATTCATGTGCTACTCTCTAGCTAGCAGGTGTTCTTCGACGCCATATTGATGTTTGGTTATGTAGG TTCTGCTGCTCTATCATATGGGGAATTCCTTCAAACAAAGCAGGACTATTCAATGGCTACAGAGGTTTACCGGAATGTCA TAGAAAGAGCAACTGAAATAAAAAATAGTGGCAATCCATACTTAGGAGCTGGTAACATGAACTTGGAGGGTTTAATGATG GGGGCCATGTGTGCTTTAGGACAGCTCGAGTCACATTTGGGGTATGGTTTTTCTTAGTTACACCCCACTCTTCCTTTCTA TGTTGCCTTAGGTATTATATCACTAATAACTGTTGTTTTAGTAACTTTGGTGATGCAGAACAGCATTTGACAAAGGCTTT AAATCAGGCAGAGGAAACCTATGGTATCTTGTCTATTCTTTCAATCTGTTACATAAACTCAATTTAAAAATTCATGTTGC TTATATCTTTGAGCTTGGTAATAGCATGTTGTGTTTCTTAGTATTTTCTTCTGTCTCTGGATTTGTTGAAGGTGATCGTC ATCCCAAGGTGGGTGTTGTCTTAACAAGTATAGCTCTTATGTATAGGCGTAAAGCAATGCAGGAGCGTTCAAGTTCAATT TTGGTGCAAGAGGTTAGGACTCTTGTGAAGTCACCTTTTTTATCTTCTGGTATTCCCAAAAGTAGAAAAGAAGGATGATT AATAAGTCATAAGTAAGATGCATCTAGATGTCTACAATCTGGTTTAGTTCCTGTTCTACAGCTCTGATGCTATGAAATTG ATCTTTCTCCAGCTTTACTCGTTCAATTATTAAGTTTCCCATTCAGAGATGCGTACTTAACAAATTGGTTGACCTTACCT GTCTTCTGTGACATGTAATTAATAATGTTTTTGTAAATTTGAAAGTGAGCGTCGAGGCTGCTAATTATTTATGTAAATTT TTTACTTCTCTGACTAGTTAATCTGCTGACAGATAACAAATCTTCCGCATGAATTGGTTTTGCATTGCTTCACTTTCTTT TGATGCCTAGTAGGGTAGTAGGTTACCAACAGTTTTTATTGCAATTCAAACTGTAATTATAACTGAAAATCATTGACAGG GTCTCTACAGAAAAGTGACAGATCTTTTGAAGGTTCCAGCAGTTGAAACTGAAACTGAAGGTATCATTTGATTTTCCAAT GTCTATGTATTGTGTACAAGATTATTACACAATTAATCATGGTTATGAATCACGGCTATACCAATGAGTGACAGTTGGAG GCTGCTACACATTCTAGTTTAAATAGTGCTTTTATGATGCTCCACATTTTCACACCAAAATCATGTCCATTCATTGCCTT TCATGACAATATTGACTCCATGCCTGATGGAGGTGAAAGCCTCAGTTTGCTCCTGGTTTTTCACTTTACAACCCTAATTT CTTTTTTTCTTTTTTCACCATTCCCTTACATGTTTGGCATAAAAAAAATTGGAAGCCATCCTTTCATTTCCAACCATGAT TCGCGCATAATGTTCGCAGTTACCGTCACTCCTGTTTGCAACCTACTGATTGCTGATGTCATTTCTGGCCATTACCATCA CTCCTAATGAGGGCAAGCCTTGGCGCAATGATAATGTTCCTGCCATGTGACTTTGTAGTCATAGGTTCAAGCGGTGAAAC CAGCCTCTTGCAAAAATGCAAGGTAAGACTGCCTACATTAGGTCCTCAAAGTAGGTCTGGCCCCTCCGTGGATCTCCCGC ATAGTGAGAGCTTTATAGCACAAGGTTTTCCCTTGACCGTCAGTCCTAATGTTCGACAGCATCCCCTATTACTTAACCAC ACACTGTTTTCCTAGTTCACAGCTTACTGTATTGACAGCACTGACACAAGTTGTGGTTCGTGTTCCTTTTTTTTCACCCT CTTCTGTCATCTCGCTATAACATTATCCGGCCTGGTATCTAACTTGGATTCATAACTTTGCAGTTATTACTTACTAAAAG ATAACTTTCTTTGTGTAGGTGTTGCATCATCAGTAGATAGAAGTGATATAGCAGCTCTTGCAAGAGGTATGATGGATTAT TTGATCCACTATAATATATGATTGACAATGTGATCAAGGTGCTTTGATATAGTAAAAAGAGAATCGACTATTATCAAGGA GTAGTAGTTATGTGTGGTCAAGATGAATGTACAGGCAACCTGATGATTTCTCAAATCTAGAAGTTCTCTATCTTGAGTGT TAGAGATAGATGCATCTCTAACGTTAACCATACAGTGGTATATCTGTTTAGTATTAAATGGAGTGTCTACAATAGGCAGT TCTTGCGTAATTGGATACTAAATCAGTTCAGATTTTGGTGTCGTATGATGAATGGGAGACTTCAATTCATCCCTCTATAG TTTGTCGGTATCTGGCACATTCATTACGTGATGATAGTTAAGTTGTGATCTTGGGTTCAAAGGCTCATTCTGTGCATGCT GATAATTTAAACCTCAGACTGTGCTGTTTGTTGACTAGTTTCTTAATATTTTAGGTGCATATGCTGAAATACTTTCCATC CAAGAAAATAGAAAGGATGAAGGAGAAAAGTTGAAGAACTTGGCTGAGGCTATATGGAGAAACCGTAGGATGTCTCTGGA TGAAGCTCTAGGAGATACAGAATCAAATAAAGTTTCGGTTATTGATGCTCGTATTAGTAGGCTCCTGTAAATTGTCCCCC CTTTTCTTCCGCTCTTGCTGCTGTATGGTCAGGCTGGACTATGGCACTTGATAAGAAATGGACTAATTTTGTATAAAATT GGGCCTTGTTTAGGTGGACGGCTTTGTTAAGTGCTTATGCAATAAGCACTTATCGTATAAGAGCTTATGTCATAATGTTT CTTCTAGTTAAATTGTCAAGCCGGTACGTATAGGATGTTGTGCATACAACATTTCTGAGGTACACAATAACACTTTAGGC GGCATCTTGATCTTTCAAGTTCAATTTTGTTTATACTAGTGTTTGGCCCGTCCATCGCACATAATTTTTTTATTTAGACT TAATTGCACTTTTGGTCCCTCAACTATTGGCTTCTTGTAAAAATCGTTCCCAAACTTCAAAATTAGCAAAAAAATGTCCT TCAACTATACATGTCTTTGCACTTTTGGTTTGCCGTTTGCCTTCCGTGAGAAAACTAATGTGAGAAGCTGATGTGGCTCC CTCATGTGTGTCTCACGTGACTTTCTTCAGAGAGATTGATGATTGGACAAGTCACATACTTCTCACGTGACTCTAAAATG CTTTAACGGTTGTGAAATTGCAAACCTTAATTAGACCTTATCACCTCTTTTAGAGTCACGTGAGAAGCATGTAACTTGTC CAGTCATCAAACTCTCTGAAGAAAGTCACGTGAGACACGCGTGAGGGAGCCACATCAGCTTCTCACGTTAGTTTTCTCAC GGTAGGCAAACGGCAGACCAAAAGTGCAACGACATGTATAGTTGGAGGACGTTTTTTGCTAATTTTGAAGTTTGGGGACG GTTTTCGCAGGAAGGCAATATTTGGGAGACCAAAAGTGCAATTAAGCCTTTTATTTATTAAAACCTCCTCCCGTGATGAA CTTTTAACCATGTAATTTAGAAATAAATAAATATATATACATATATTTTATTTATATTCCTTGTATGAAATATCAGATTA CAATCCCTTTGTAAAATGTTTATTTCTTGTGGAAACTTTTA
CDS sequence (LotjaGi3g1v0437500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGCGTAGCGGCAAAGTTGTCAGCAAGGGCTTCCACTGCTTCTGCTGCCCTCAGGCCTTCTCCTCTTGCTGCTTC ATTCTTCAGGTCATTCAACAATGGCTTGGAGTTGGACAAAGACATGGCAGTCCCTGATGCTGTTCGTATGATCAACTACG CAATGGAAAAAGCTAGGACTGACAAATCAGTTGGATCGTACGGTCTAGGTATGCTGGTGTTGAAGCATTGCGTTACAACT GAGTTAACCGAGGGCAAGGACCCACAACATGAGAATTCCAAAGGAATTGCTTTGCTTGCTTGGTCCACTTTGTTGTCTGA AAGAGGAGAGTACGGTGATGCAATTGAGAAGCTGCAGAGTGTTCAAGAATTGACCAATTCTTTCTTGGGTGTTAGAGTTG CTGCCTTTGAAGCCCAGGCTGGACTTCATCTCGAGTTGGGGCAGGATGATATGGCATCAGTAGTGGGGGATAAGTGCGTG GAGCTCATGGAAAAACAGAAAACGGAAGATTCTGAGGCTCTAAATGTTCGTGCTAAAGCACTAAAAGGGCTGATTGAACT TGCCAAGGGAAATATTGAGTCAGCGGAAGCTTTCTTTGACAAATCTCTGCGCAGCAAGCTATGTGACGGTTCTGCTGCTC TATCATATGGGGAATTCCTTCAAACAAAGCAGGACTATTCAATGGCTACAGAGGTTTACCGGAATGTCATAGAAAGAGCA ACTGAAATAAAAAATAGTGGCAATCCATACTTAGGAGCTGGTAACATGAACTTGGAGGGTTTAATGATGGGGGCCATGTG TGCTTTAGGACAGCTCGAGTCACATTTGGGTAACTTTGGTGATGCAGAACAGCATTTGACAAAGGCTTTAAATCAGGCAG AGGAAACCTATGGTGATCGTCATCCCAAGGTGGGTGTTGTCTTAACAAGTATAGCTCTTATGTATAGGCGTAAAGCAATG CAGGAGCGTTCAAGTTCAATTTTGGTGCAAGAGGGTCTCTACAGAAAAGTGACAGATCTTTTGAAGGTTCCAGCAGTTGA AACTGAAACTGAAGGTGTTGCATCATCAGTAGATAGAAGTGATATAGCAGCTCTTGCAAGAGGTGCATATGCTGAAATAC TTTCCATCCAAGAAAATAGAAAGGATGAAGGAGAAAAGTTGAAGAACTTGGCTGAGGCTATATGGAGAAACCGTAGGATG TCTCTGGATGAAGCTCTAGGAGATACAGAATCAAATAAAGTTTCGGTTATTGATGCTCGTATTAGTAGGCTCCTGTAA
Protein sequence (LotjaGi3g1v0437500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRVAAKLSARASTASAALRPSPLAASFFRSFNNGLELDKDMAVPDAVRMINYAMEKARTDKSVGSYGLGMLVLKHCVTT ELTEGKDPQHENSKGIALLAWSTLLSERGEYGDAIEKLQSVQELTNSFLGVRVAAFEAQAGLHLELGQDDMASVVGDKCV ELMEKQKTEDSEALNVRAKALKGLIELAKGNIESAEAFFDKSLRSKLCDGSAALSYGEFLQTKQDYSMATEVYRNVIERA TEIKNSGNPYLGAGNMNLEGLMMGAMCALGQLESHLGNFGDAEQHLTKALNQAEETYGDRHPKVGVVLTSIALMYRRKAM QERSSSILVQEGLYRKVTDLLKVPAVETETEGVASSVDRSDIAALARGAYAEILSIQENRKDEGEKLKNLAEAIWRNRRM SLDEALGDTESNKVSVIDARISRLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 425 | 425 | 8.6E-173 | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 26 | 7 | - | – | |
| Phobius | 27 | 425 | 399 | - | – | |
| Gene3D | 80 | 246 | 167 | 2.0E-10 | ||
| SUPERFAMILY | 98 | 293 | 196 | 4.43E-11 | ||
| ProSiteProfiles | 176 | 243 | 68 | 8.553 | ||
| Gene3D | 260 | 415 | 156 | 6.1E-8 | ||
| ProSiteProfiles | 263 | 296 | 34 | 7.206 | ||
| Pfam | 265 | 322 | 58 | 7.8E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0437500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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