Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0439800
Transcript ID	LotjaGi3g1v0439800.1
Lotus japonicus genome version	Gifu v1.2
Description	Vesicle-associated protein 4-2; TAIR: AT4G21450.1 PapD-like superfamily protein; Swiss-Prot: sp\|Q8VYN2\|VAP42_ARATH Vesicle-associated protein 4-2; TrEMBL-Plants: tr\|I3SHF4\|I3SHF4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0439800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:85298064..85303720) extracted from Lotus japonicus Gifu genome v1.2.

CCAACTTTAATTAATAGCCGGACATAAAAAAGCAAATCAAATTCATAAAATTGGTAGCATTGAGATCCGAGTTATTCATT CCATGATCCATAAGTGTAAATTCACTCTCCAACCCAATCCTTCTGCTGCCAAATTGTCTCACTCATTAAGGTAGTAACCA GTAACCATTAACCAACACCATTTAGGACAACAGTTGTGAATCAAAGGCCACATTCAACAACCTTGGATTCCTATGTTTGA CACAAACCCATAATAATACCATTTCTGCTACAACTGCCAAATCTACTCCAAGCTTCAAACTTTTTGAGCAATTCTGATAC CCTTTTGCCGGAATTGGTGGTTCCCGGTCAGAAATGGAGGTGGAGAGTGAAAAACCAGGGTCTGATGTCAAGGGTTGGAG TTTTTGTAGAATGCCTTTTTGGCAAACAAACAACCACATTCCACCATCATCTTCTTCTTCCACCACATCTTACATGCACA ATGGCCATCACCAAAACATCAGTTTTCAGTCTGTTGATAGATCCACTCATCAGGCTTCACCCACGGTTTCTTCCGTGGCT AAGTCTCTGCTTCCTACTAGGAGGAGGCTCCGTCTTGATCCTTCCAACAAGCTCTACTTCCCATGTATGTGTTTCTGTTT TTTACTTTTTGGGATTGTTTTCCGTTTGGATTTGTTGCTGAATTGAAGATTGTTTTGATTTCTTGGTCTGTGTCATTTAT CCCTTTTATAGCATAGTTAATGGATTGTTGTCTTACCCATTTGTGGTTTCTGTTTACTGTCTTTGTTTCATTGTTGTCCT GAATTTAAGGCAAGTTTTCTTATAATGGGTGGAATCTAGTATCTAGATCATGATTTAAGTTTCCTGTAGATTTTAGGTTG CTGTTTATCTGATTTAATGTGGCTTTGTTTTGTAGATGAACCTGGTAAGCAAGTTAGTAGTGCAATTGCAATTAAAAACA CTTGCAAGACTCATGTAGCTTTCAAGGTGTGGTTTCTGTCTCCATTTCTTGTGTTCCATTATTTTCAAACATTATGTTCA ACACAAGTTATCATGGGACTCAATTACTCATGTGACAATTTGGTGATAACTTTTTCATTGTATGCTGACACCCTGTTGGA AAACATTTAGCTGTTTCAGCCTACAAACTAGAAAAATAGAAATTTGTTCAAAATGTTTGAGCTAGCTAGACTAGAATTTC TTCAACAACTGTAACAAAACAGGAGGCCCTTTCCATTTTAACATTGTGAAAGTTTTTATCATGGGAGTTTTCCATAAAAA TAGTTTCAAAATCTTCAAGTTTTCGCTATGGTGACTAGATGTTAAGTGTAATATGTTGTTCATGAGTCATTACCATCTTC GGATTGGGTTTCGTTAGCATATTTATAGGATAATATGAAAACTTTTATTCTTGTACACTACCTACTTATATATACCAATG GCTTTTTTGTTGCTTCATTATTTATCCACTCTTAAGGTTACTAACTAATGTTATGCTTTATTTTGTCTTAGTTTCAAACA ACTGCACCCAAGAGTTGTTATATGCGCCCTCCAGGTGGTATTCTTTCTCCTGGTGAAAGTATAATTGCCACTGGTAATTG TCCTCCTAAACTTGTGTTAAGAAAAGTTAGAAAACTAGTCAAATGGTTGGAATTTGGTGAATACTCTAACAATTATCTCA CATATTTGCAGTATTCAAGTTCGTGGAGCCACCAGAGAACAATGAGAAGCCGCTTGATCAGAAAAGCAAGGTTAAGTTTA AAATCATGAGCCTAAAAGTGCAAGGTGAAACGGACTACGTACCAGAACTGGTAACATATTATTTTACCTTTGACATTTAG CATCAACATTGATGGTTTTTATTTATATGCTTGCTTGTTTATGTAAGCTTAAGCTGAAACCTTTCTTCCTGTCACTGAGA AAATTGAAGTTCCTCATGATTGTGTATGTGATAAAATCATATTTTTAGTGGCAGAAGATAGTTTAACTGAATTTTTTTTT TACCACATTAACTGAAGATGTTGATCAAGATCTTAGGTTATGTTTTGGGAATCTGTTAGTACGCATTTCAAAGCACCATA ATGGAGAAGCAACAATCTGTTGCCGTGGAACAAACGTGCTTTATCAAACACAATTTTGTTCATATTAGCATAATAAAATA ATGAGAAAATAACATTTCATTAAGACAGATTATAAATAGTTCAAGAAATTGTTTTTTGCGCATGCTTTATCTCTTTTGAG GACAACATTGGAATTTTATCATGTGTCTCGGTTTTTGGAAGTAGAGGAGCATCTGGAACCTTCATGCTTATCTATAATCT GATTTTACTTTAATGCCAAAATCTTTCTGGAGACTTTAGTGTTGCTTAACTGTTACACTATTCTCCGTCAGTACTATTTA TTTTGAGGCTGTGGAGTTATTGTATCACCCTGGAATATATTCTTGAGTCTTTCCTTATTCCCATCACCCAATTATTGTCA TACCTGAATATTGTCTGCTCCATTTTATTCTACTCTTACTGCACTTCATTTTAGGTGTATGCTTATGATTTTGGAAGTTA AGTAACTTCTATCTACTGGCATTACTGAGCATTACGGCTTTTGACTAAACTTGGTACACAACTTCCTTACATTGAATTTA TCAAATTGAAGATAAATAAGAATGAAAAATATGTTTAAGAAAGCCTTGAGCTGATTGCAAGTATTAGATGTCTTCTCAAA ATTATATTTTCAGAATCCATCTGTTGCAAGTGTGACTTGCAATTCTCACTCCATATAAGTCATACTCTCCCAGAAAATGA TTATAGATGCGATTTTAATCGCCCAGGGCACCATTAATTGCACAATTGTGTGATTAAGTGATTATAATCGCGATTTTGAC TATTGAGACTGCTTTCTGTGTATGTAATAGCAATTCCCTCATAATGCTTTCAGATGCTGAACATATTTTTGTCATCTGAT TCTAACTGCAGTTTGATGAGCAAAGAGATCAAGTAGCGGTGGAGCAAGTTCTGCGGGTTATATTCCTGGACCCTGAACGG CCTAGCCCTGTAAGATTATTTTTCTCAAATATATTTTATGACCTCTATCACTTTATGTGAAGTCATAGTTGAAGACTTTT GTTTCTTAAAGGCCATGGATAAGCTTAAGCGGCAGTTGGCCGAGGCTGAGGCTGCACTGGAATCACGAAAGAAACCCCCA GAGGAGACAGGTCCTCGAGTAGCTGGGGAGGGACTTGTTATAGATGAATGGGTTAGACACCTTTTTTTAACATTCTCTTT TTCTCCTCATTTGGTTGTGTATTGGATGACCTCATTCCATTTTCTCACATTGTGTTCCCTTGATCCATATGTAGAAAGAA AGAAGAGAAAGATACCTCGCCCGGCAGCAGGTCGAAGGTGTTGATTCAGTGTAAACTGTAAAGTATGTCTTTCTTTCTTT CTCTCCTTTCATGCCCTTGAGTCAAGGTCCATAGTGTTCTCCAATTGTGTGTTCTGAAGTTTAATTCCTGGGACACTAGT CTGTCGAATGTGTTGAGTGATGTAGAGAAGTGCTCTGGGGAGTCCGGAGGCACTTAATTTTTCCTTTCCAATGATGTTTG TTGTGTTAAATGCGAGTGAATTAATACTATGATCGGCTGTACTTAATTCTACTTTTACATCATCTCCTATGACTTGTAGA TAGCTTGTTTGTTTTGAATGAAATTATTGAACAGGATTTTCACTTTCACCTAAGTAATGCCGTGGCTAGATTTATTTCAG TTGAATCAGATTGCATACTGCTGTAACCTCTTCTTTTTCCTGTTAATCTTGGAACATCATTCTCAACAATTTTATAACTA GATGAAAGGATTGGCTTATTAAAAGTGAGACACTTAGAGAGGAAAATGAAGAGTCATAGTCGTTGTTAAGAAAATTAAAT GAATAGATGTGTCTGGTTAAAAGGCTTAATTAAGTGACTCTGGCAATAAGCTCTTATCGCATAAGTGCATATCCATTTGC TAAATTGAGAAATTCATAGTTCATAGTTTGTTACATGTATTTCATCATAATTTCAGTCATTCATTTTTGAATTAACAGCT ATAATTTCTCACTTTCCTCTCAGTTGAATTCATCACATTGTATATATGCTTAAAAATAATTTGGAAGAAAAAAAGTATAA CCATAAATTAAAAAGTCAATTACTGAGATTGTGTTAAATGGTATACTCATGTATATCAAACAATGGTGTTATTTAAATCC ATTTCCCTTGATTTTTCTTCTCAGCTGGTATAAATTGGTGAATACAAGGGTGGTCCTTTTAGGTTTCTTCTCGTAAGTGA ACCCCTTATCCCTCCTTTAGAGACGGAATATCTTAAAAGGAAATCCCATGATGGTCAGGAATCAGCTCATTTAGTAATCT CACACCATTTTAATTATATTTCCATAAACAGGATGTGAAGTTCCAGTTTCAGTTTTACTAATAATTTCTATTCTTCTTTG TCCATGCTTCAATTCTATAGACATATTACTTGTTCTATGCAGTTTGTTCAAGCGTTTGAAAATGAAAATCTGTATTTCTT ATTAAAAGTTTCTCTTTCATGTTAAAAAAACTTTGGGTATGCTTAAGTGGTTAGTAATGTAAAACATATTCTATAATAGA GGTTAGAAAACCATCAAGGGTTAGTGTTCTGGTAAGGGAGCTGTAAAGTATAGAAGTTTAAACCCCAAAGATGATTGTTG GGAGAATTGGGTCCTCTAAAGTAAAGAAAGTAATTACAGCCATGAATTAAAAAAACCAATAGATGAAGCTGTGATCATAC ATATGTACAATTCATGACAGATTATGAAGTTATTTAAATCTCAACTATTTGTTTTACAATCTCTAAAGTGTACTTTAGAA GTCACAAAAGATACAAATAGGTGGTTGGGAGGGTTTGGCATTAAGTTTTGAAACAACAAAGGCTATTGCTGGAAAAGGTA AGACAAGTAATTGGCCTTAAATCTCATGAACTACTATTTTTATGAATCTATATATAAAATTTCATCACTCACCCTCACAG ATCTATTCATCTTTTTTTTTTTTAATTCTAAAATTATATAGATGTTAATGCTCCAAATTAAATAGAAAGATGATCAATAT GATATTTAGTTAACAGTCCCTATTTTTATCTGCAATTTGTAATCTAGAATGAAAATGGTGATTTAACTAACATAAAGTAG ATAATGTAATCTCTCATGATCCAATAAGTGGATAGGTCCACTAAAAAAGCGAGCATCAAGCACAATATTCAAGTGCCTAT TATAATGGGGAATCATGATGTCAATCCTGAGGTTACCATCATTGATTATTGAGCACCCGACGTGCCGTGTAAAGTAAAGG GAGCAGTATTTTATAGGTTTAATTTCAATTTGGGTCCCTGATGTTTCAGAAATGTGCGATTTGCGTCCCCCGTGTTTAAA ACGTGCGGTGAACTCCCTGACGTTTCTAAAATGTGCGATCGAAGCCCTTCCGTCCATATTCGTTTGGTTCCGTCTGTTGA CTAAACGGAGCTGCATCCACGTGTTATAAAACGAGCGAATTTACTCCCTGATCTTTCATCTTTGTGCAATTTGCCTCCCT AATGTTTAAAAACAGAATTTCAAAAAATAAATCTTTAACAGATTGTAACAAAACAAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0439800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGTGGAGAGTGAAAAACCAGGGTCTGATGTCAAGGGTTGGAGTTTTTGTAGAATGCCTTTTTGGCAAACAAACAA CCACATTCCACCATCATCTTCTTCTTCCACCACATCTTACATGCACAATGGCCATCACCAAAACATCAGTTTTCAGTCTG TTGATAGATCCACTCATCAGGCTTCACCCACGGTTTCTTCCGTGGCTAAGTCTCTGCTTCCTACTAGGAGGAGGCTCCGT CTTGATCCTTCCAACAAGCTCTACTTCCCATATGAACCTGGTAAGCAAGTTAGTAGTGCAATTGCAATTAAAAACACTTG CAAGACTCATGTAGCTTTCAAGTTTCAAACAACTGCACCCAAGAGTTGTTATATGCGCCCTCCAGGTGGTATTCTTTCTC CTGGTGAAAGTATAATTGCCACTGTATTCAAGTTCGTGGAGCCACCAGAGAACAATGAGAAGCCGCTTGATCAGAAAAGC AAGGTTAAGTTTAAAATCATGAGCCTAAAAGTGCAAGGTGAAACGGACTACGTACCAGAACTGTTTGATGAGCAAAGAGA TCAAGTAGCGGTGGAGCAAGTTCTGCGGGTTATATTCCTGGACCCTGAACGGCCTAGCCCTGCCATGGATAAGCTTAAGC GGCAGTTGGCCGAGGCTGAGGCTGCACTGGAATCACGAAAGAAACCCCCAGAGGAGACAGGTCCTCGAGTAGCTGGGGAG GGACTTGTTATAGATGAATGGAAAGAAAGAAGAGAAAGATACCTCGCCCGGCAGCAGGTCGAAGGTGTTGATTCAGTGTA A

Download CDS Sequence

Protein sequence (LotjaGi3g1v0439800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVESEKPGSDVKGWSFCRMPFWQTNNHIPPSSSSSTTSYMHNGHHQNISFQSVDRSTHQASPTVSSVAKSLLPTRRRLR LDPSNKLYFPYEPGKQVSSAIAIKNTCKTHVAFKFQTTAPKSCYMRPPGGILSPGESIIATVFKFVEPPENNEKPLDQKS KVKFKIMSLKVQGETDYVPELFDEQRDQVAVEQVLRVIFLDPERPSPAMDKLKRQLAEAEAALESRKKPPEETGPRVAGE GLVIDEWKERRERYLARQQVEGVDSV

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR10809:SF101 View details on PTHR10809:SF101 Search for proteins/transripts with this domain View external data on PTHR10809:SF101	38	265	228	2.2E-129	–
PANTHER	PTHR10809 View details on PTHR10809 Search for proteins/transripts with this domain View external data on PTHR10809	38	265	228	2.2E-129	IPR016763 Show description in modal box View details on IPR016763 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF49354 View details on SSF49354 Search for proteins/transripts with this domain View external data on SSF49354	67	208	142	1.62E-33	IPR008962 Show description in modal box View details on IPR008962 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.60.40.10 View details on G3DSA:2.60.40.10 Search for proteins/transripts with this domain View external data on G3DSA:2.60.40.10	74	204	131	2.6E-27	IPR013783 Show description in modal box View details on IPR013783 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50202 View details on PS50202 Search for proteins/transripts with this domain View external data on PS50202	78	200	123	22.428	IPR000535 Show description in modal box View details on IPR000535 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00635 View details on PF00635 Search for proteins/transripts with this domain View external data on PF00635	79	189	111	7.7E-29	IPR000535 Show description in modal box View details on IPR000535 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	216	234	19	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	216	242	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005789 View details of GO:0005789 AmiGO InterPro QuickGO	Cellular component	Endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.	Subterm of View details of GO:0016020 View details of GO:0044425 View details of GO:0044432 Part of View details of GO:0042175 View details of GO:0098827

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0439800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0439800.1