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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0441800 |
| Transcript ID | LotjaGi3g1v0441800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoyl synthase; TAIR: AT2G20860.1 lipoic acid synthase 1; Swiss-Prot: sp|B7FM45|LIAS_MEDTR Lipoyl synthase, mitochondrial; TrEMBL-Plants: tr|V7BWP4|V7BWP4_PHAVU Lipoyl synthase, mitochondrial; Found in the gene: LotjaGi3g1v0441800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85443020..85448534) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATTGAGGGAGAGTGGAGTTGGCGGCACCTTGTATTTCCAGCGGTCTCTATCTATCTACGCACGCGATCTGTGATT GTCCGAAGAGAGCGAGGGATCATGTATTCGCGGGTTAGAACCGTCGCCGGAACCCTCAAATGGGCCACCAAACCCTTCTC TTCAACCTCAATCACCACCACCACCACCAACACCGCCACGCCGTCGCAAACTCTCGCGGCGCTCCGGGCTCGCCTGGCGG AAGAATCGCCATCGCTCTCTGACTTCATTGCGCTGAAATCCGGTGACGGTTACTCGGTCGAGGTCGGCACCAAGAAGAAG CCGCTTCCGAAGCCCAAATGGATGAAGGAGTCCATCCCCGGCGGCGAGAAGTACGTGCAGATCAAGAAGAAGCTCCGTGA ATTGAAGCTTCACACCGTCTGCGAGGAGGCTAAGTGTCCTAATTTGGGTGAGTGCTGGTCCGGCGGCGAGACCGGTACCG CCACGGCTACTATCATGATTCTTGGAGACACTTGCACTCGAGGTTGCAGGTTATATACCAATAATTTCTTTTTGTTTTTG GAATTTACATAGTTTTTTTTGCAATTGGTGCCTTCAGTTTAGGTTAATCATGAATTAGAGTAACCATTGGTACGTTAGCT TGATGGATAAATGGCATGGAGTGGTGGTATGGAGATGTAGGTTCTCATTGTGTGAGACCTGAGGAATGTGAAGTTGTTTT TAAGCAATGATGAGTTGTTTACTGGCATATTATGATGAAATGGATGATGCCCCTGTTCGAAAGTATGCAATGATGAGTTG AGTGGACTCAGTGTTGTCAAATAGCGGTTACAGCGGCGCTATAGCGTAGTGCTCTCAGAGCTTACCACTATTCCGCTGTT GTCCGCTATTTTCCACTATTTTCCGCGATCAGCAATTAACAGCACTGAGTGGACTGGCTCCTTTTGTCTAGTTGCTACCT CATAGTCGTGATCAAATTCTTGTGTTAATTGAATTATAAGAATCGCTTCTGAAGTCTGAACCTGTACTGCCTTAGATGTT TTTTATAGGTCAATATAAAAGGTTTTGTAATTATACAAATCTGAACCTGGCACTGTTCATGCTGGGGAAATTACACTTGC ATACCTAAATTTATGTGCTCTTCTATTGCCCAATGCCCTTTATTTGGGAAATTGTTTGTGCCTAACTAACCTACTATATC AGTTATTCGCAATTTTTGCACCATTTTCTTTTGTCTTGTAAATAACAAAAGGAAGTAATGTAATTTCCAAAGAGGGATTT TGGTTGTAATAAGCGCTACAGGGATGTCAATGTAATAATCCTAAGTCCTGAAATGCTAAAACCTATTGAAGTTGTACATG GATCAGTTTGTTTTTACTAGAACGCTTCCTTTTAGTAATGTTGTTATTTTTCAGATTTTGCAATGTAAAGACATCAAGGA CTCCTCCTCCACCTGACCCTGATGAGCCCACTAATGTGGCGGAAGCAATTGTGGCATGGGGTTTGGATTATGTGGTCATA ACAAGTGTTGACCGTGATGATTTACCTGATCAAGGGAGTGGTCATTTTACTGAAACAGTGCAGAAGATGAAGGCGTTGAA GCCTAGTATGCTGATAGAAGCCTTAGGTATGCATTTTGGATATTTGTAGTTTCTGAAAATATAGCAGTGTGGTGGTCATT TGTATGGCCGTATGGGCAATTGATCATTTAGTTCTATCCAATAGCAAACAACAATCAAACCTTTTATAGGTTGGTTGGCA CCTAATTCTACTGAATTAGATGAGTGTCTATCTGGTTTGCAGTTAGAGCTAGTGAATGATATATATGAAATGAAGGGCTA TCTTATGTGAGTTTGTGTTTCAACTTTCAACTATAGGCTATTAGGTAGCTAGGTGAATTACAGGTGGTACGTAAGATGCA AATTCCTCATGCAGTTTCTGTTGATGAATTCCACATAGTTAACTGGTAATATTTCAATAGTTGGCTTTTAATCAGAATAG TAAAAGAAATCTTGTTGATAGGGCATGAGGATTGGGGAATAAACTTGAAGGTTTGATTTGTATGTGCATAATTTCATTAT AGGGTTTCAGTTTTGGCATATTTGTTGAGATAGATCATTACCTTTTCAAATAAAATTCAAAATTTCTTCCTATTACAGTT ATTGCTTTATTTTTGTTGCAACAGTTCCTGACTTCCGAGGAGATGCAAACTGTGTAGAGAAGGTTTCCAAATCAGGATTA GATGTCTTCGCGCATAATATTGAAACAGTTGAAGAGCTTCAAAGTGTTGTGCGGGATCATCGTGCCAATTTTAAACAGTC TTTGGATGTTCTAATGATGGCCAAGGATTATGCTCCTGCTGGAACCCTCACCAAGACTTCCATAATGTTAGGTTGTGGGG AAACGCCTGACCAGGTTTTGAAGACAATGGAGAAGGTGAGAGCAGCTGGAGTGGATGTGATGACATTTGGTCAGTATATG AGACCTTCAAAGCGCCATATGCCAGTATCAGAATATATTACACCTGAGGCTTTTGAGAAATATCAGACTCTTGGAATGGA AATGGTAAGTTCTTAGCATTTATTCTAGGGTTCTGATTAGTTGAATTTTACTTGTCTGTAAGTGAAAGGAATATACATTT ATTGATTGGAAAGTAAAAAATTACTAAATTTTGGGGTGGGCATGGTCCAGTTTCTTTAAGAAAACCAAACTTAACTAAGT CAAACTTGTATTATGGTTCTTTTTTTTTCTTATTCAAATTGAACTGGTTTACTTTTGGTCAAATCAATTTGATTTATAAG AACCGGTTAAGGACCCAGTTTTAGACTGGTTTAAGTACAGGATTGGATTTTTTCCTCTATTTGCCACTATCCACTATAGA AAGGCAAGACACGATAAAAAACTGGTGGAGTGATATTGACAAGGGAGAAGAAAATTCCCTGAATAGAACCATGGAACGTT GTGGGGTGCCATCTCTGGAGATTTGTGAACAGAGCTACTGAAGTCTGAAGGAGCATTACCTTAACTTTAGGGCTGGATCC TTTCACAGTTAACTACCCTAACCAAGGAAACTCAATGCTTCTGCCCCCACATCTGCACCACGGGATGACGATTGAGAGGA TAACCGAGCTATTCTCTGATGTGGCTGTGTTAAGCCCCAAGTGTACCCGAAGAAGAACACAAAGAGGCTTTGAGAAGAAG GGGGGATTGTTCTGATGGAGAAAAATCAGAAAACCTGAAAACCAAAAATACGAAGACAGTTCAGAGGGGTTCGTGAAGAT TTGGGGAAAATTGCAAACAGATAGGAAGAAGATTCAATCCTAACTAAGGATTGCATAACAAAAGGAATGTAGGTTTCATT GTTTCTAAATAAAGGGAACACAGATTTTGGATGAGGTTCTATTGCTAGTGGTAGTTGTAGATGATATAAGGTTTGGAAGG AGACACTGATTCTAAACATGAATGATAATTTGATATGAGTTTTGGACATTTGGGGTTTAGTTAGAAGTTTGCTTACTTTG AATGATATCCGGTTTGGCAAAAGTGATTTTTTTTGAATAAAATGTTTGTGAACCATTGTTCCGTTTTTTTTAAGCTTGGT GCAGTTTGGTTTGCCGTGCAGTTCTGTTCATTGCAATTGTTTGAACATGCCTATTACTAATTTACTATCAATCAGTATTT ATTGCTGTATTGTCGTGATTTTGCTGGTGCTCTCATAATCTCAATATCCATCAACATTTACTAAAATCTTCTGGCGGTTG TTACTATGTTTTCGTAGTCTAAGTAGATACTAGGGTCAACGTATCCAACTTAAAGCATTTGGGCTTCTTGCCGGTGTTTG TATATGTAACTCAAAATTTGTAACAGATAGGATCATTTCCAGCATCATTCTTGCCTATTCAGTCTGTAACAATTCTACAT CGTGCTAATCCATAATGAGTTCAGCAATTAGGATGACATCTTAGCGCCCCATCTAGTAAAGATCTAATTCTAGCACTTCA TCTGGCATTCTATACGTCACCATGCGAGTGTAATCATGGCAGCACTTTTCTTTCCTGTTGATTATTGCATCCAACTTCAT GTTGATTTGTGGAAAAGCTCTAATATATTAAAAGTTTCTTATAGTATATTAATTATGACTTGATCATGTTGTATGAATGA TGGCTTAATTCTACTTTGCATGTGACAGGGATTTCGATATGTGGCATCTGGACCCATGGTAAGATCATCATACAAGGCAG GTGAGTTCTATATTAAATCCATGATTGATTCAGATCGGGCTGCATCGTCCTCAAAGCTGACTGCCTCTTGATCAATTCTT TTTTTTTCTTTTGTTATTTACACATCATTTAATGTTCATTATATGTAAGAAGAAGCGCAGGCTTACTTCATCATGTTGAT GCTCATTCCTCATGTAATATATCATTTAAATATTACAAACAGGCTTATGCTGTCTGCAATTTTTCTCTGCCCCCTCCCAC ACACAAGCATCATTGAGTGGTTTGCTTTTAATTTATTTAGAAAATGCATAGGTTTATAAGAGCCCATTTGTATTCCGTAA AAAACCTCGGTTTGATCATCCTGAGGCAATGAAAACCAAAGTTAAGAAAATCTGAGACAAGAGTTATGATAAACTTGACT CGGAATGATAAATTTGTTTTTGACAAACAGGCTCTAATGTTTTGTTCTACATGAACACTTTTTGCTCTCTGTAACCGGTG CAATTTGTACCAATTACTGTGTTTTTATAATTTAGTTCTTATTTGAGGATACAGTTAAAGATGTTGATTTTAATATGGTT CATGTGTATATTTTTGTGAGTGCTACTCAATTTGGGTTTATTTGGTAACTGCATTCTAACTCATCTCACTGACTTTGAAA TTTAAAGAAAATTTTGGGACTACTTGATAGCAGTATACCAGCAATAAAATGTGTAATTCTGGTGCCAAGTTGTCCTGAAG CCATGTCTAGTGTAATAGTTACAATAGAGCTGTGAGGTATTCTTTTTTGTGCTGTGACTTATGACAGGCTGGTGAGTGTC TGTGTTTTGATATCCTGTGGGGACTGGTTCTAAAAACTAATGAAAGCTGGAATGGTTGAGTAATTCTTTTTTAGGCTAAA GTACACTCCTCAAGCATATAATATTGTGGAAACTGGAAAGTTTGGTAGTCCCTTTGTACTGGGGGGTCGGCGTTGCTAAT TAGGCCATTATATGTCATGTTGGCAAATCTTAGTGCCGTTAGTGGGGCTCTGGTCTTGACTATCTTGGTGATACAGTTAA TAAATAGAACTGCTTTTTAGAAGAATGGAAATTTAATATATGATGAGCTTGCATTCAAAAAAAAAAAAAGAAGAATGGAA ATTTAAATAACTAGCGTTTTAGCCCATGCAGTGAGAAGAATTTTAAATTTTTTTTGGTACATTGGAAATAAATTACACCC GACAAAAATTGATTTCTGAACCTTCCCCTCTAACTCATATGTCACTTAACTCTTACCACTTGAGCTATTTTTAAG
CDS sequence (LotjaGi3g1v0441800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTCGCGGGTTAGAACCGTCGCCGGAACCCTCAAATGGGCCACCAAACCCTTCTCTTCAACCTCAATCACCACCAC CACCACCAACACCGCCACGCCGTCGCAAACTCTCGCGGCGCTCCGGGCTCGCCTGGCGGAAGAATCGCCATCGCTCTCTG ACTTCATTGCGCTGAAATCCGGTGACGGTTACTCGGTCGAGGTCGGCACCAAGAAGAAGCCGCTTCCGAAGCCCAAATGG ATGAAGGAGTCCATCCCCGGCGGCGAGAAGTACGTGCAGATCAAGAAGAAGCTCCGTGAATTGAAGCTTCACACCGTCTG CGAGGAGGCTAAGTGTCCTAATTTGGGTGAGTGCTGGTCCGGCGGCGAGACCGGTACCGCCACGGCTACTATCATGATTC TTGGAGACACTTGCACTCGAGGTTGCAGATTTTGCAATGTAAAGACATCAAGGACTCCTCCTCCACCTGACCCTGATGAG CCCACTAATGTGGCGGAAGCAATTGTGGCATGGGGTTTGGATTATGTGGTCATAACAAGTGTTGACCGTGATGATTTACC TGATCAAGGGAGTGGTCATTTTACTGAAACAGTGCAGAAGATGAAGGCGTTGAAGCCTAGTATGCTGATAGAAGCCTTAG TTCCTGACTTCCGAGGAGATGCAAACTGTGTAGAGAAGGTTTCCAAATCAGGATTAGATGTCTTCGCGCATAATATTGAA ACAGTTGAAGAGCTTCAAAGTGTTGTGCGGGATCATCGTGCCAATTTTAAACAGTCTTTGGATGTTCTAATGATGGCCAA GGATTATGCTCCTGCTGGAACCCTCACCAAGACTTCCATAATGTTAGGTTGTGGGGAAACGCCTGACCAGGTTTTGAAGA CAATGGAGAAGGTGAGAGCAGCTGGAGTGGATGTGATGACATTTGGTCAGTATATGAGACCTTCAAAGCGCCATATGCCA GTATCAGAATATATTACACCTGAGGCTTTTGAGAAATATCAGACTCTTGGAATGGAAATGGGATTTCGATATGTGGCATC TGGACCCATGGTAAGATCATCATACAAGGCAGGTGAGTTCTATATTAAATCCATGATTGATTCAGATCGGGCTGCATCGT CCTCAAAGCTGACTGCCTCTTGA
Protein sequence (LotjaGi3g1v0441800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSRVRTVAGTLKWATKPFSSTSITTTTTNTATPSQTLAALRARLAEESPSLSDFIALKSGDGYSVEVGTKKKPLPKPKW MKESIPGGEKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDE PTNVAEAIVAWGLDYVVITSVDRDDLPDQGSGHFTETVQKMKALKPSMLIEALVPDFRGDANCVEKVSKSGLDVFAHNIE TVEELQSVVRDHRANFKQSLDVLMMAKDYAPAGTLTKTSIMLGCGETPDQVLKTMEKVRAAGVDVMTFGQYMRPSKRHMP VSEYITPEAFEKYQTLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIDSDRAASSSKLTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PIRSF | 19 | 379 | 361 | 1.1E-145 | ||
| PANTHER | 21 | 376 | 356 | 2.8E-176 | – | |
| Hamap | 21 | 374 | 354 | 62.03 | ||
| PANTHER | 21 | 376 | 356 | 2.8E-176 | ||
| Pfam | 24 | 112 | 89 | 8.0E-17 | ||
| SFLD | 70 | 365 | 296 | 0.0 | ||
| SFLD | 70 | 365 | 296 | 0.0 | – | |
| TIGRFAM | 71 | 365 | 295 | 8.6E-121 | ||
| Hamap | 77 | 371 | 295 | 131.689 | ||
| SUPERFAMILY | 93 | 366 | 274 | 9.55E-59 | – | |
| Gene3D | 121 | 360 | 240 | 2.4E-16 | ||
| SMART | 128 | 335 | 208 | 3.2E-11 | ||
| CDD | 132 | 312 | 181 | 1.30003E-8 | – | |
| Pfam | 135 | 297 | 163 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Cellular component | Mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. | ||
| Biological process | Lipoate biosynthetic process | The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. | ||
| Molecular function | Lipoate synthase activity | Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of LotjaGi3g1v0441800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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