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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0443700 |
| Transcript ID | LotjaGi3g1v0443700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial; TrEMBL-Plants: tr|I3T3F4|I3T3F4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0443700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85695057..85697922) extracted from Lotus japonicus Gifu genome v1.2.
CCACACTCACGTTCTGGGCCTTCAGCAAGCCCAGCCACTGGCTTTTGGCATTTGAAGCCGCCAGACACAAAGAAAGCTTA AAATCGATTCCAGGTTCAAATTTTCAGCTGTGAAGCTTGGTGATGAGTGTTTGAGAGAGTAGTGAACAAGAACCATGATG CTTCTTCGCTCAAGATGGAAACAACATTTCAACATGTCTCTTGTTTCTAGGCCATTTCCGTTGTACTACTCCACGGAAGC TCCGGTTGATTTCTCAGCTCTCGAAACTCGCGTTTTGAAGAGCGGTGACCCCAGAACTCCAATGGCTCCGATTCTGAACC AGTGGGTCGAAGGAGGTGGAGACATCACGCAAATTCAGCTCCAACGTCTCATCACCCGCCTCGCTTATTTCCGCCGATTC ACACATGCCCTTCAGGTTACTTTCTCTCTAAACCCCAACGAAGGTTATTGTGGGTACTTTTTTTTTTCTGATGATGTTCA ATTGTTCATTTTGTATTCGCACATGACATGACACTAAGAAAATTATTTGCAAGGTGCAAACTCATAATATTGCTTGGACT ATTGTGTTGTGAAGTGTCATATTGACAATATCGGCGGTGTTTGGTTTTCAGTTTGAAAGCATGTTTGGGGCATTGGAATT CGAGATCACACATTCAATGCCCCAAACGTGAAAGAGGCTTTGGACATCGGTTGGCGTTGGGTGAAAACACTTTCAAACTG ACAACCTCTAAGCTAGTTTTTTGGTAGAGTTATGCCTACCCGAATTCTAATATGGTATTAGGCCTATCCTAGATACGTTT ATTAGAGACTATCTATACATGAGTCACCCGAGTAAGCTAGTTTGTAGAGTTAGGCCTAACCTAAGTTATAAGATTCTCCT GTTTATTTTTTGCAGGTAGAAAATCAAGCCCAATTCAATTCTAACACAACTTGTTTAGATCCTTGTGTGCTTACTTAATT ATAATAAATAGTGTATGAACAAGTTAAACTTCTCATGAATTCCTGAATGTGTTTTTTTTATTTATATTTTACTCATATTA GTACCAACGCTATGCATATGGGGATTAATTTGCCTAATGTGATACCCATTTTAGGGACTAATTTTACTTTCCATCATTCA GTAATTTATATGAGTAATGTTGTATTTTCATGAACTAATGATTAGTATGGCTCTTTTATCATATCATGGTTGAACCTTTT AAAATTTAGAGCGAAGGTAACACTCTTTCAGGTATCAGAGTGGATGAGCAATGAAAGGAACTATGATTTATCTTCTGGAT TGATTGCTAAACGTATACACCTCATATCTAAAGTTCATGGCCTAAAAAAAGCAGAGGATTTTTTCCAAGGCATTCCTGAT GATAAAAGGGGGTTCAAGATCTATGCTTCTCTTTTGAGTTGCTATGCAGAACATAAATCTTTGGAGGAGGCGGAGGCTAT CATGAAGAAAATTAAGGAGTTGCGACCTATGCATTTAACGGTGTGTTATAACATATTGCTAAAACTATATGCTCAGAAAG GTAAATATGAGAAATTGGATAGGTTGATGCAAGAAATGAAAGAGAATGACTTGTGCAACGGTGCTACGTTTACCATTCGG TTGAATGCTTACGTGGCCGCAAAAGATGTAGAGGGGATGGAGAAGCTACTAATGCAGATGGAAGCTGATCCTATGGCGAC TGTGGACTGGTATACATACTCTACAGCAGCAAATGGTTATCTGAAAGCTGGCAATGTTGAGAAGGCCTTGGCTGCGTTGA AGAAATCAGAGCAATCAGTTAAGGGTAAGAAGTTGAGGCTTGCCTATGAATCTCTTCAATCTACATATGCTGCTATTGGG AATAAGGATGAGGTTTATCGACTTTGGAATAGGATTAAGAATCTTCAAAACTGTTGGAACTCAAGTTACATATGTATGCT GAGCTCATTATTGAAGCTGGATGATTTTGATGGTGCAGAGAAGATCTTGGCAGAATGGGAATCCGAACATAAAAACTTTG ACACCAGAATTCCAAATTTGATGATCACTGCGTACTGTAAACGAGGTCTGTTAGATAAGGCTGAAGCATATATCCAGAAG CTCTTGGATAGTGGCAAGAAATTAGATGGAAGTTCATGGGACCGTATGGCTGCTGGATATCACATGGATAATGATATGGA AAAAGCAGTTCAAACAATGAAGAAAGCAATCTTGGCAAATCGACCAGGCTGGAGGCCTAGCCCCTCTACTTTGGTTGCTT GTATCACGTACTTGAAAGAAAAACTTGACTTGGAATCAGCTCTTGAGATTTTGAAGTTATGCAAAGAAGATGGTCATATC AAAATCACTACCTATGATGGACTAGTAAGTTATGCTCATGGTGAAATACCGGATAAAGAGGCCCTTGATTTGATGAAACG AGATTATCAAATGGATGGAAAAAACTATGGGAGAATATAAAAGATGAACACAGAACTTAATTTGTTTTTCTTTTTATGAT CAGAAAGTTCGGGTGGCTTCAAATGTGGTCATGAGTTAGGGCATGCCTTCAAGGTTGCTGGTCTTTCAACGCGACCCTCA CATCGACTGCGAAAACCGAACACCCAACTTTCTTCAAGCGATCCGTTCTTACCAACGGAGTCAACCTGTATTGTTGGTGT GCTGAACTTAATTTTTTTGATACATGGGCTGAACTTAATTGATCTCAAAAGATGTGTTGTTTCTCCATTGCTGATAACTC TGATTACTTTTCCCATTCCTATTGTTTTAACTTTTAAGTAATAAATATTAGTTGCAACATTCAGCATTATTTTTTTAGAA AATAAATGTGTAATTGTTACGTGTTTAGTGAAGCTTACGTGAAACTTTTTTTCTCTTTAAATTTTA
CDS sequence (LotjaGi3g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTTCTTCGCTCAAGATGGAAACAACATTTCAACATGTCTCTTGTTTCTAGGCCATTTCCGTTGTACTACTCCAC GGAAGCTCCGGTTGATTTCTCAGCTCTCGAAACTCGCGTTTTGAAGAGCGGTGACCCCAGAACTCCAATGGCTCCGATTC TGAACCAGTGGGTCGAAGGAGGTGGAGACATCACGCAAATTCAGCTCCAACGTCTCATCACCCGCCTCGCTTATTTCCGC CGATTCACACATGCCCTTCAGGTATCAGAGTGGATGAGCAATGAAAGGAACTATGATTTATCTTCTGGATTGATTGCTAA ACGTATACACCTCATATCTAAAGTTCATGGCCTAAAAAAAGCAGAGGATTTTTTCCAAGGCATTCCTGATGATAAAAGGG GGTTCAAGATCTATGCTTCTCTTTTGAGTTGCTATGCAGAACATAAATCTTTGGAGGAGGCGGAGGCTATCATGAAGAAA ATTAAGGAGTTGCGACCTATGCATTTAACGGTGTGTTATAACATATTGCTAAAACTATATGCTCAGAAAGGTAAATATGA GAAATTGGATAGGTTGATGCAAGAAATGAAAGAGAATGACTTGTGCAACGGTGCTACGTTTACCATTCGGTTGAATGCTT ACGTGGCCGCAAAAGATGTAGAGGGGATGGAGAAGCTACTAATGCAGATGGAAGCTGATCCTATGGCGACTGTGGACTGG TATACATACTCTACAGCAGCAAATGGTTATCTGAAAGCTGGCAATGTTGAGAAGGCCTTGGCTGCGTTGAAGAAATCAGA GCAATCAGTTAAGGGTAAGAAGTTGAGGCTTGCCTATGAATCTCTTCAATCTACATATGCTGCTATTGGGAATAAGGATG AGGTTTATCGACTTTGGAATAGGATTAAGAATCTTCAAAACTGTTGGAACTCAAGTTACATATGTATGCTGAGCTCATTA TTGAAGCTGGATGATTTTGATGGTGCAGAGAAGATCTTGGCAGAATGGGAATCCGAACATAAAAACTTTGACACCAGAAT TCCAAATTTGATGATCACTGCGTACTGTAAACGAGGTCTGTTAGATAAGGCTGAAGCATATATCCAGAAGCTCTTGGATA GTGGCAAGAAATTAGATGGAAGTTCATGGGACCGTATGGCTGCTGGATATCACATGGATAATGATATGGAAAAAGCAGTT CAAACAATGAAGAAAGCAATCTTGGCAAATCGACCAGGCTGGAGGCCTAGCCCCTCTACTTTGGTTGCTTGTATCACGTA CTTGAAAGAAAAACTTGACTTGGAATCAGCTCTTGAGATTTTGAAGTTATGCAAAGAAGATGGTCATATCAAAATCACTA CCTATGATGGACTAGTAAGTTATGCTCATGGTGAAATACCGGATAAAGAGGCCCTTGATTTGATGAAACGAGATTATCAA ATGGATGGAAAAAACTATGGGAGAATATAA
Protein sequence (LotjaGi3g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLLRSRWKQHFNMSLVSRPFPLYYSTEAPVDFSALETRVLKSGDPRTPMAPILNQWVEGGGDITQIQLQRLITRLAYFR RFTHALQVSEWMSNERNYDLSSGLIAKRIHLISKVHGLKKAEDFFQGIPDDKRGFKIYASLLSCYAEHKSLEEAEAIMKK IKELRPMHLTVCYNILLKLYAQKGKYEKLDRLMQEMKENDLCNGATFTIRLNAYVAAKDVEGMEKLLMQMEADPMATVDW YTYSTAANGYLKAGNVEKALAALKKSEQSVKGKKLRLAYESLQSTYAAIGNKDEVYRLWNRIKNLQNCWNSSYICMLSSL LKLDDFDGAEKILAEWESEHKNFDTRIPNLMITAYCKRGLLDKAEAYIQKLLDSGKKLDGSSWDRMAAGYHMDNDMEKAV QTMKKAILANRPGWRPSPSTLVACITYLKEKLDLESALEILKLCKEDGHIKITTYDGLVSYAHGEIPDKEALDLMKRDYQ MDGKNYGRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 476 | 444 | 7.5E-188 | – | |
| PANTHER | 33 | 476 | 444 | 7.5E-188 | – | |
| Gene3D | 53 | 200 | 148 | 1.7E-13 | ||
| ProSiteProfiles | 134 | 164 | 31 | 7.213 | ||
| Pfam | 138 | 163 | 26 | 0.035 | ||
| ProSiteProfiles | 169 | 203 | 35 | 9.021 | ||
| Pfam | 170 | 214 | 45 | 4.2E-8 | ||
| TIGRFAM | 171 | 201 | 31 | 5.4E-6 | ||
| Gene3D | 201 | 272 | 72 | 6.2E-7 | ||
| ProSiteProfiles | 239 | 269 | 31 | 7.607 | ||
| Pfam | 241 | 265 | 25 | 0.036 | ||
| SUPERFAMILY | 241 | 409 | 169 | 3.34E-8 | ||
| ProSiteProfiles | 275 | 305 | 31 | 5.174 | ||
| Gene3D | 308 | 460 | 153 | 5.7E-15 | ||
| ProSiteProfiles | 309 | 339 | 31 | 5.546 | ||
| Pfam | 312 | 338 | 27 | 1.1 | ||
| ProSiteProfiles | 344 | 378 | 35 | 9.175 | ||
| Pfam | 349 | 375 | 27 | 4.1E-4 | ||
| TIGRFAM | 349 | 379 | 31 | 7.2E-4 | ||
| ProSiteProfiles | 379 | 413 | 35 | 5.141 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0443700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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