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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0446200 |
| Transcript ID | LotjaGi3g1v0446200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G47360.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LVS3|PP422_ARATH Pentatricopeptide repeat-containing protein At5g47360; TrEMBL-Plants: tr|V7ACP5|V7ACP5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0446200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85943913..85946141) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGATGTCTGTGTAAAACTATTTTACACTTTCAGTGTATATCCATTAAACTCTATTAAAATATGATAAAGAAAATAAA ATCATTACTTGAACCCTGAAACCAACCACCGTGGTTGACAAGTTCCGCCGCCGCAGTTCATCAACCGGTTCTCTTCCTCA CCGCCCTACAGAGAATAAACACCGCCGCACGAGAGAGAAACGACGTCGCAGTTCATCAACCACCATGAATCTTCTGAAAC CTTCGTTCTCATAAGGTTAGGAAGAACCGAGTTCAATGCTCCATTTTCTAAATTTTCGGTTTTCACCATGCTTACACAAA CTCAAAACCCTTCCCTTTTCCTCCCAGAAAATGGGTATGGCTTCTCTTGCTGATACCCTTTACAGCCATTTGCATCAATG CAATGGCAGTGTTGAGAATTCATTGTCAAAGATTAAGCCCAAACTGGATTCTCAATGTGTTATTCAAGTTGTGAGTAGGT GCTGTCCCAAGCAATGTCAATTGGGTGTTAGGTTTTTCATTTGGGCTGGATTTCAATCTGGGTATAGGCATAGTGCTTAT ATGTATAGGAAAGCAAGCAGCTTGCTTGGGATTGATAGGAATCCTCAGATGATTTGTGATTTGATTGAGTCTTATGAGGC TGAAGGGTGTGTAGTCACTGTTAACATGTTTAGGGAGGTTCTGAAGCTTTGTAAAGAGGCTCAGCTTGCTGATGTGGCTT TGTGGGTGTTGAGGAAGATGGAGGATTTTGGCTCGCGCCCGGACACGGTGATGTATAATGTGGTTATCAGGTTGTGTTGC AAGAAGGGTGATGTTGAAATGGGTGAGAAGTTGTTGAGAGAGATGAGTTTGAGTGATGCTTGTCCTGATTTAATTACATA TATAACGATGATCGAGGGGTTATGTAATGCGGGCCGACCGGAGGATGCTTACTCCTTGCTGAAGGATATGAGAGTACATG GATGTTCACCTAATTTGGTGGTTTTATCAGCTATTTTTGACGGGTTATGCAGATCTGGATCGATGGAAATGGCATTGGAA TTGTTGGATGAAATGGAGAAATCTGGGGATTGTAGACCGAACGTGGTTACTTATACATCTCTGATTCAAAGTTTCTGTGA GAGAAGCCAGTGGAATGAGGCATTGAATGTTCTGGATAGAATGAGAGCTTTTGGGTGCCTTGCAAATCATGTTACTGCTT TTACTTTGATTGATAGCCTTTGTGACAAGGGTTGTGTAGAAGAAGCTTATAGGTTAGTTGATAAATTAGTGGAACATGGT GTTTCATATGGTGATTGCTACAGTTCACTTGTGATTTCTTTGATAAGGATAAAAAGACTTGAGGAAGCAGAGAAGCTCTT CCGGGAATTGCTTGCTGGTGAGTTGAAACCTGACACTTTGGCATCTAGCCTTTTGCTTAAGGAGCTTTGTATGAAGGATC GGGTATTGGACGGATTCTACTTGCTTGATGCAATGGAGAATATGGGATGCTTGTCTTCCATTGACTCTGATATTTATTCT ATTATTTTGATTGGACTTTGTCAAAAAAACCACTTGGCAGAGGCCACAAAGCTTGCCAAGATAATGCTTAAGAAATCAGT TCTACTAAGACCTCCATACCAAGATAGTGCAATTGATATCCTGAGAAAATCTGAAGAAAAAGATCTTGTAGATCTTGTGA ACCAGCTGACTGGTATACGTAAGGGACTTGGACAGTAAATTGTTTTATGGATGAGGTCATATTCATTGTTTATCTGCCAC ATCTGTTCATCAAGTTTAAATTGTATAACTGCAATTGTAAAGATTGGTTTTTGTGGTGTAGGTTGATAAACTTGATTCAT TTCTTGCCTTTTTGCTTTTGGGCAACGGAATAGTTCTATTTCTTGAGGAAGCTGTACTTGAATCTGACTTATATGTAACT AGTGAATTGCTGTTGTCATGCCTAACTGACTATATTACCTTGTATTATTATCTTTCTCTACATGCTGAGGTTCAACCTCA CTAAGAAAGTGCCGAAGTCAGAATGAGCAGCAGAAATCAAATTTTATTGTGTTATCTATTTTAATATGTTTCTGATATAT TGTAACTGGGAACCTATATTTTGGCAAATTGTAGAACACCACCTGTGGATGTTTAGTGCTTGTGTGAATTCTTAAATGCT TACTGTAATTATGCAGTGAACTTATATCATCACTTGTTTGTGATAAAAAATATTATACAGATTGACTCC
CDS sequence (LotjaGi3g1v0446200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCATTTTCTAAATTTTCGGTTTTCACCATGCTTACACAAACTCAAAACCCTTCCCTTTTCCTCCCAGAAAATGGG TATGGCTTCTCTTGCTGATACCCTTTACAGCCATTTGCATCAATGCAATGGCAGTGTTGAGAATTCATTGTCAAAGATTA AGCCCAAACTGGATTCTCAATGTGTTATTCAAGTTGTGAGTAGGTGCTGTCCCAAGCAATGTCAATTGGGTGTTAGGTTT TTCATTTGGGCTGGATTTCAATCTGGGTATAGGCATAGTGCTTATATGTATAGGAAAGCAAGCAGCTTGCTTGGGATTGA TAGGAATCCTCAGATGATTTGTGATTTGATTGAGTCTTATGAGGCTGAAGGGTGTGTAGTCACTGTTAACATGTTTAGGG AGGTTCTGAAGCTTTGTAAAGAGGCTCAGCTTGCTGATGTGGCTTTGTGGGTGTTGAGGAAGATGGAGGATTTTGGCTCG CGCCCGGACACGGTGATGTATAATGTGGTTATCAGGTTGTGTTGCAAGAAGGGTGATGTTGAAATGGGTGAGAAGTTGTT GAGAGAGATGAGTTTGAGTGATGCTTGTCCTGATTTAATTACATATATAACGATGATCGAGGGGTTATGTAATGCGGGCC GACCGGAGGATGCTTACTCCTTGCTGAAGGATATGAGAGTACATGGATGTTCACCTAATTTGGTGGTTTTATCAGCTATT TTTGACGGGTTATGCAGATCTGGATCGATGGAAATGGCATTGGAATTGTTGGATGAAATGGAGAAATCTGGGGATTGTAG ACCGAACGTGGTTACTTATACATCTCTGATTCAAAGTTTCTGTGAGAGAAGCCAGTGGAATGAGGCATTGAATGTTCTGG ATAGAATGAGAGCTTTTGGGTGCCTTGCAAATCATGTTACTGCTTTTACTTTGATTGATAGCCTTTGTGACAAGGGTTGT GTAGAAGAAGCTTATAGGTTAGTTGATAAATTAGTGGAACATGGTGTTTCATATGGTGATTGCTACAGTTCACTTGTGAT TTCTTTGATAAGGATAAAAAGACTTGAGGAAGCAGAGAAGCTCTTCCGGGAATTGCTTGCTGGTGAGTTGAAACCTGACA CTTTGGCATCTAGCCTTTTGCTTAAGGAGCTTTGTATGAAGGATCGGGTATTGGACGGATTCTACTTGCTTGATGCAATG GAGAATATGGGATGCTTGTCTTCCATTGACTCTGATATTTATTCTATTATTTTGATTGGACTTTGTCAAAAAAACCACTT GGCAGAGGCCACAAAGCTTGCCAAGATAATGCTTAAGAAATCAGTTCTACTAAGACCTCCATACCAAGATAGTGCAATTG ATATCCTGAGAAAATCTGAAGAAAAAGATCTTGTAGATCTTGTGAACCAGCTGACTGGTATACGTAAGGGACTTGGACAG TAA
Protein sequence (LotjaGi3g1v0446200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHFLNFRFSPCLHKLKTLPFSSQKMGMASLADTLYSHLHQCNGSVENSLSKIKPKLDSQCVIQVVSRCCPKQCQLGVRF FIWAGFQSGYRHSAYMYRKASSLLGIDRNPQMICDLIESYEAEGCVVTVNMFREVLKLCKEAQLADVALWVLRKMEDFGS RPDTVMYNVVIRLCCKKGDVEMGEKLLREMSLSDACPDLITYITMIEGLCNAGRPEDAYSLLKDMRVHGCSPNLVVLSAI FDGLCRSGSMEMALELLDEMEKSGDCRPNVVTYTSLIQSFCERSQWNEALNVLDRMRAFGCLANHVTAFTLIDSLCDKGC VEEAYRLVDKLVEHGVSYGDCYSSLVISLIRIKRLEEAEKLFRELLAGELKPDTLASSLLLKELCMKDRVLDGFYLLDAM ENMGCLSSIDSDIYSIILIGLCQKNHLAEATKLAKIMLKKSVLLRPPYQDSAIDILRKSEEKDLVDLVNQLTGIRKGLGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 32 | 192 | 161 | 1.5E-19 | ||
| PANTHER | 115 | 278 | 164 | 1.8E-71 | – | |
| PANTHER | 115 | 278 | 164 | 1.8E-71 | – | |
| ProSiteProfiles | 128 | 162 | 35 | 7.256 | ||
| Pfam | 162 | 211 | 50 | 3.1E-12 | ||
| ProSiteProfiles | 163 | 197 | 35 | 11.356 | ||
| TIGRFAM | 165 | 198 | 34 | 2.0E-7 | ||
| Gene3D | 193 | 262 | 70 | 2.1E-20 | ||
| ProSiteProfiles | 198 | 232 | 35 | 13.219 | ||
| TIGRFAM | 200 | 233 | 34 | 2.6E-10 | ||
| Pfam | 232 | 281 | 50 | 2.2E-13 | ||
| ProSiteProfiles | 233 | 267 | 35 | 10.128 | ||
| TIGRFAM | 237 | 270 | 34 | 4.9E-7 | ||
| PANTHER | 240 | 336 | 97 | 1.8E-71 | – | |
| PANTHER | 240 | 336 | 97 | 1.8E-71 | – | |
| Gene3D | 263 | 337 | 75 | 2.8E-19 | ||
| PANTHER | 269 | 442 | 174 | 1.8E-71 | – | |
| ProSiteProfiles | 269 | 303 | 35 | 11.882 | ||
| SUPERFAMILY | 269 | 385 | 117 | 3.8E-7 | ||
| PANTHER | 269 | 442 | 174 | 1.8E-71 | – | |
| TIGRFAM | 271 | 304 | 34 | 5.6E-8 | ||
| ProSiteProfiles | 304 | 338 | 35 | 9.142 | ||
| Pfam | 310 | 336 | 27 | 0.002 | ||
| TIGRFAM | 310 | 337 | 28 | 7.4E-4 | ||
| Gene3D | 338 | 472 | 135 | 2.5E-13 | ||
| Pfam | 341 | 365 | 25 | 0.037 | ||
| TIGRFAM | 341 | 374 | 34 | 3.7E-4 | ||
| ProSiteProfiles | 342 | 372 | 31 | 7.191 | ||
| ProSiteProfiles | 373 | 407 | 35 | 6.818 | ||
| ProSiteProfiles | 410 | 444 | 35 | 8.287 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0446200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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