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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0448600 |
| Transcript ID | LotjaGi3g1v0448600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rac-like GTP binding protein; TAIR: AT5G45970.1 RAC-like 2; Swiss-Prot: sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2; TrEMBL-Plants: tr|A0A151SEW1|A0A151SEW1_CAJCA Rac-like GTP-binding protein RAC2; Found in the gene: LotjaGi3g1v0448600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86177745..86180227) extracted from Lotus japonicus Gifu genome v1.2.
AGGCAAAGCAATGTTTATATTCTAAATACTCATTATTATTGACTCTCTCCCTTGTACAATACTTAACCAACTAACACCAC TAGAGCACCAAACCTCTCCTTTTGCTGATGATGATCTAAAGTTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCA ATAATAAGAGACAGTGAGACACACTAAAGTTGGTGATAAAGGACTTGCCTTATTAAATGCTCTGCTTCCCCCCCTCCATT TCTATTCAAAATTTAAATTCACCCCATTCTTTTTCTAAACATCAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC ACTCTCTTTTTCGCTTGTTCTATTTTTAGTTTCAAGTGAAAGAAATATGGAAAGCTTTGCTGTAAGGTAAGGAAAATCAG TTCAGAAAAGGAGGTTGAAAATGAGCACAGCTAGATTCATCAAGTGTGTTACTGTTGGAGATGGAGCAGTGGGAAAGACC TGTATGCTTATCTCTTACACCAGCAACACATTCCCAACGGTATGACAACACATGGTGCTTTGATTAATTGTTTCAATTCA ATTTTGAAGGTGTAAATTTAGTTTGTGTTTGGCCAATAAAAAATTCACTTGTTGAAAAACAGGATTATGTGCCTACTGTT TTTGATAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAGTTAACCTGGGATTATGGGACACTGCTGGTAAGTATTT TCATATGTTTGGATGAGCGCTAACAGAATTGATTATGGACATAAAACTGCATATGATTTAAGTGGGTTAAAATGATGTGA TTTATATTTGAATACTTTTATGAAAAAAAAAAGCTTTTTGTAGGGTAATGTCATGGAATTTAATTGTCAAAGATGAAAAA AGTAGAATTGATTTTGCATACAATACTAGCCAGCATTTGTATTGTGTCATCTTCAATAGGCATAGTAAGTAGTGAATATA AGGTTTCTCTCTGCTAAAATTGGAGTAATTAATCTCCTTAATTCCATGCTATACTCATTTATTGTGGCTTCATAAATTCA GGACAGGAGGATTACAATAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTCTTGCTGGCTTTTTCCCTCCTTAG CAGAGCCAGCTATGAAAATATCTCCAAAAAGGTTACTTTGAAAGTTGCCAATATCTCCCTCTTTTTGAAGACACAATAAC ATCTATTGATCTGTTAATATTATACAAATGTTTTACATTCATCTTGATATGATATTATTCCATTGAACTGAATCTCACAC TATGCTAATTTTATGCAGTGGATTCCTGAACTGAGACACTATGCCCCAACTGTGCCAATTGTTCTTGTGGGAACCAAACT TGGTATCAGCTAAAAATATAAATATTACTTTACAATTTGTACTACTCATGCTAAAAGCTCAGCCTTGGTGGTCATCTAAT GCTTAATTGGACCTTAATTTTAATTGGATGCAGATTTGAGGGAAGACAGGCAGTATTTGATTGATCATCCTGGAGCCACA CCTATTACTACTGCCCAGGCAAGCAACTTTCCGTTTGGTTTATGAAAACGAGAAAATAACACATCATGAGATCTCTACTT CAGTAAAAATGTCTCGGAATGTGATATTTTTCCGTCATTAACCGAGACAATTTTCTTGTTGGAGGCATGAATTGTTTATG ATTTTGTTTTAGTATACACCATAATCCTGTAAAATCTTGTGCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTG TACCTAGAATGCAGCTCAAAGACTCAACAGGTTCTGATTTTCTTAATACCTATTATAACCTCCCTCTTTTTCTATCTTCC TCCTATAGTCCTATGATACTATCCTTCACTTTCACTTTCTTCATTTTCTCTATTCTTTCTATAACTCCTCCTCCTCCCTA CACCTTTTTTCATCTCAAAAGATGTGTGGAAATATTTTTTTCCATTGAATTTGGTATATGAACTTACACATGAGATCATG GCCATGACATAGATACAGTTATAATTTGAAGTGTATAAGTCATTTTATTGCTCCAAGTTGGAAAATAAAAAAAAGTTTTT AATTCTGAGCCTAATTCAATGCCTTTGCTGCTTTATTTCAGAATGTGAAGGCTGTGTTTGATGCTGCTATCAAGGTTGTT TTGCAGCCACCTAAACCAAAGAAAAAACGAAAGAAGACCAGACCATGCGTTTTCCTTTAATTGATGTTCATGTTTGATTC GCAATCTGTAGCATTCGGGACCTTCTTCCTATGTTTTTTACCCTTTATTTGATTGCACAAATATGCTTTTTGAACATATG TATTACACACTCTTATCTTCTTTCCGTTTTCTTGTATTTTTTGTTGGTGGGTCTAAGTGATATTTCAATGTATCTACTGG AACATACAAGGAGACTGTACTCGATCAAAGATAAATTTTGTGATAAGAAATAATAGCATTCATAGTGACTTTTTTTATTA GGG
CDS sequence (LotjaGi3g1v0448600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACAGCTAGATTCATCAAGTGTGTTACTGTTGGAGATGGAGCAGTGGGAAAGACCTGTATGCTTATCTCTTACAC CAGCAACACATTCCCAACGGATTATGTGCCTACTGTTTTTGATAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAG TTAACCTGGGATTATGGGACACTGCTGGACAGGAGGATTACAATAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTG TTCTTGCTGGCTTTTTCCCTCCTTAGCAGAGCCAGCTATGAAAATATCTCCAAAAAGTGGATTCCTGAACTGAGACACTA TGCCCCAACTGTGCCAATTGTTCTTGTGGGAACCAAACTTGATTTGAGGGAAGACAGGCAGTATTTGATTGATCATCCTG GAGCCACACCTATTACTACTGCCCAGGCAAGCAACTTTCCGTTTGGTTTATGA
Protein sequence (LotjaGi3g1v0448600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQASNFPFGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 150 | 150 | 20.02 | ||
| PANTHER | 1 | 145 | 145 | 3.3E-98 | – | |
| PANTHER | 1 | 145 | 145 | 3.3E-98 | – | |
| Gene3D | 3 | 147 | 145 | 9.5E-51 | – | |
| SMART | 4 | 144 | 141 | 7.8E-11 | – | |
| SUPERFAMILY | 6 | 130 | 125 | 7.38E-44 | ||
| CDD | 6 | 142 | 137 | 1.8124E-110 | – | |
| SMART | 7 | 150 | 144 | 1.3E-12 | – | |
| TIGRFAM | 7 | 124 | 118 | 4.7E-32 | ||
| PRINTS | 7 | 28 | 22 | 3.1E-29 | – | |
| Pfam | 8 | 127 | 120 | 1.9E-43 | ||
| SMART | 9 | 147 | 139 | 7.4E-74 | – | |
| PRINTS | 30 | 46 | 17 | 3.1E-29 | – | |
| PRINTS | 47 | 69 | 23 | 3.1E-29 | – | |
| PRINTS | 109 | 122 | 14 | 3.1E-29 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi3g1v0448600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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