Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0448600 |
Transcript ID | LotjaGi3g1v0448600.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Rac-like GTP binding protein; TAIR: AT1G75840.1 RAC-like GTP binding protein 5; Swiss-Prot: sp|Q40220|RAC2_LOTJA Rac-like GTP-binding protein RAC2; TrEMBL-Plants: tr|I3SHJ4|I3SHJ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0448600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86177771..86180204) extracted from Lotus japonicus Gifu genome v1.2.
AAATACTCATTATTATTGACTCTCTCCCTTGTACAATACTTAACCAACTAACACCACTAGAGCACCAAACCTCTCCTTTT GCTGATGATGATCTAAAGTTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATAAGAGACAGTGAGACACA CTAAAGTTGGTGATAAAGGACTTGCCTTATTAAATGCTCTGCTTCCCCCCCTCCATTTCTATTCAAAATTTAAATTCACC CCATTCTTTTTCTAAACATCAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCTCTTTTTCGCTTGTTCTAT TTTTAGTTTCAAGTGAAAGAAATATGGAAAGCTTTGCTGTAAGGTAAGGAAAATCAGTTCAGAAAAGGAGGTTGAAAATG AGCACAGCTAGATTCATCAAGTGTGTTACTGTTGGAGATGGAGCAGTGGGAAAGACCTGTATGCTTATCTCTTACACCAG CAACACATTCCCAACGGTATGACAACACATGGTGCTTTGATTAATTGTTTCAATTCAATTTTGAAGGTGTAAATTTAGTT TGTGTTTGGCCAATAAAAAATTCACTTGTTGAAAAACAGGATTATGTGCCTACTGTTTTTGATAACTTCAGTGCAAATGT GGTGGTTGATGGCAGCACAGTTAACCTGGGATTATGGGACACTGCTGGTAAGTATTTTCATATGTTTGGATGAGCGCTAA CAGAATTGATTATGGACATAAAACTGCATATGATTTAAGTGGGTTAAAATGATGTGATTTATATTTGAATACTTTTATGA AAAAAAAAAGCTTTTTGTAGGGTAATGTCATGGAATTTAATTGTCAAAGATGAAAAAAGTAGAATTGATTTTGCATACAA TACTAGCCAGCATTTGTATTGTGTCATCTTCAATAGGCATAGTAAGTAGTGAATATAAGGTTTCTCTCTGCTAAAATTGG AGTAATTAATCTCCTTAATTCCATGCTATACTCATTTATTGTGGCTTCATAAATTCAGGACAGGAGGATTACAATAGGCT TAGGCCTTTGAGCTACAGAGGAGCAGATGTGTTCTTGCTGGCTTTTTCCCTCCTTAGCAGAGCCAGCTATGAAAATATCT CCAAAAAGGTTACTTTGAAAGTTGCCAATATCTCCCTCTTTTTGAAGACACAATAACATCTATTGATCTGTTAATATTAT ACAAATGTTTTACATTCATCTTGATATGATATTATTCCATTGAACTGAATCTCACACTATGCTAATTTTATGCAGTGGAT TCCTGAACTGAGACACTATGCCCCAACTGTGCCAATTGTTCTTGTGGGAACCAAACTTGGTATCAGCTAAAAATATAAAT ATTACTTTACAATTTGTACTACTCATGCTAAAAGCTCAGCCTTGGTGGTCATCTAATGCTTAATTGGACCTTAATTTTAA TTGGATGCAGATTTGAGGGAAGACAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATTACTACTGCCCAGGCAAG CAACTTTCCGTTTGGTTTATGAAAACGAGAAAATAACACATCATGAGATCTCTACTTCAGTAAAAATGTCTCGGAATGTG ATATTTTTCCGTCATTAACCGAGACAATTTTCTTGTTGGAGGCATGAATTGTTTATGATTTTGTTTTAGTATACACCATA ATCCTGTAAAATCTTGTGCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACCTAGAATGCAGCTCAAAGAC TCAACAGGTTCTGATTTTCTTAATACCTATTATAACCTCCCTCTTTTTCTATCTTCCTCCTATAGTCCTATGATACTATC CTTCACTTTCACTTTCTTCATTTTCTCTATTCTTTCTATAACTCCTCCTCCTCCCTACACCTTTTTTCATCTCAAAAGAT GTGTGGAAATATTTTTTTCCATTGAATTTGGTATATGAACTTACACATGAGATCATGGCCATGACATAGATACAGTTATA ATTTGAAGTGTATAAGTCATTTTATTGCTCCAAGTTGGAAAATAAAAAAAAGTTTTTAATTCTGAGCCTAATTCAATGCC TTTGCTGCTTTATTTCAGAATGTGAAGGCTGTGTTTGATGCTGCTATCAAGGTTGTTTTGCAGCCACCTAAACCAAAGAA AAAACGAAAGAAGACCAGACCATGCGTTTTCCTTTAATTGATGTTCATGTTTGATTCGCAATCTGTAGCATTCGGGACCT TCTTCCTATGTTTTTTACCCTTTATTTGATTGCACAAATATGCTTTTTGAACATATGTATTACACACTCTTATCTTCTTT CCGTTTTCTTGTATTTTTTGTTGGTGGGTCTAAGTGATATTTCAATGTATCTACTGGAACATACAAGGAGACTGTACTCG ATCAAAGATAAATTTTGTGATAAGAAATAATAGC
CDS sequence (LotjaGi3g1v0448600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACAGCTAGATTCATCAAGTGTGTTACTGTTGGAGATGGAGCAGTGGGAAAGACCTGTATGCTTATCTCTTACAC CAGCAACACATTCCCAACGGATTATGTGCCTACTGTTTTTGATAACTTCAGTGCAAATGTGGTGGTTGATGGCAGCACAG TTAACCTGGGATTATGGGACACTGCTGGACAGGAGGATTACAATAGGCTTAGGCCTTTGAGCTACAGAGGAGCAGATGTG TTCTTGCTGGCTTTTTCCCTCCTTAGCAGAGCCAGCTATGAAAATATCTCCAAAAAGTGGATTCCTGAACTGAGACACTA TGCCCCAACTGTGCCAATTGTTCTTGTGGGAACCAAACTTGATTTGAGGGAAGACAGGCAGTATTTGATTGATCATCCTG GAGCCACACCTATTACTACTGCCCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACCTAGAATGCAGCTCA AAGACTCAACAGAATGTGAAGGCTGTGTTTGATGCTGCTATCAAGGTTGTTTTGCAGCCACCTAAACCAAAGAAAAAACG AAAGAAGACCAGACCATGCGTTTTCCTTTAA
Protein sequence (LotjaGi3g1v0448600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSS KTQQNVKAVFDAAIKVVLQPPKPKKKRKKTRPCVFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 177 | 177 | 25.233 | ||
PANTHER | 1 | 196 | 196 | 8.4E-129 | – | |
PANTHER | 1 | 196 | 196 | 8.4E-129 | – | |
Gene3D | 3 | 183 | 181 | 1.3E-66 | – | |
SMART | 4 | 180 | 177 | 8.8E-24 | – | |
CDD | 6 | 178 | 173 | 3.66989E-135 | – | |
SUPERFAMILY | 6 | 178 | 173 | 2.7E-53 | ||
PRINTS | 7 | 28 | 22 | 1.2E-37 | – | |
SMART | 7 | 180 | 174 | 1.3E-29 | – | |
TIGRFAM | 7 | 171 | 165 | 1.0E-32 | ||
Pfam | 8 | 178 | 171 | 1.8E-52 | ||
SMART | 9 | 180 | 172 | 4.7E-113 | – | |
PRINTS | 30 | 46 | 17 | 1.2E-37 | – | |
PRINTS | 47 | 69 | 23 | 1.2E-37 | – | |
PRINTS | 109 | 122 | 14 | 1.2E-37 | – | |
PRINTS | 155 | 177 | 23 | 1.2E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Biological process | Small GTPase mediated signal transduction | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. |
Expression pattern of LotjaGi3g1v0448600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…