Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0448900 |
| Transcript ID | LotjaGi3g1v0448900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT2G42360.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41; TrEMBL-Plants: tr|A0A1J7HM06|A0A1J7HM06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0448900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86210927..86212379) extracted from Lotus japonicus Gifu genome v1.2.
ACGGCAACAGACTTTTGTAGCCCCAACAGGAAAACAACACAAAAATAAAGAAAAATGAGATCACAAAGACTTTTGGCCAC TTTTTTCCACTCCACACGCGTTACACACAACATGCATAACCTACGTACGCCACCAACTATAACCAAAGTCAAAGTCCATA ACCAAGTCTCCATCATCATCAACTTCTTCTTCTTCTTCTTACTTATTCAAACACACAACACAAGAACACCAAACAACATA ACTAAACACCCTCTCTAGCTATCTCTCACACGCACAATGAGTAGTAATTTCAATGAGGATGATGATCGAGACTACAACCC ATTTGTTAACTTCCATAACCGATTCTCATCAGACCACAACAACTTCAACAAGAGGATCTTGCTGGTTGCCATAGTTTCAT TATCAGCGGTGTTAGCTCTGGTTCTGGCACTTCACCTCTACGCCAGGTTCGTTCTCCGTCGCCAAGCTCGCCGTAGAGCC GCCATTCACCAACTCACCCTCACCGTCGCCGCCCACAACACCACCCAATTCGCCAACGAAGGTCTCGACGCTACCCTCAT CAACGCGCTTCCCACTTTCATCTTAAACAAATCGCAAGAAGATGAAAGTGAAGAATGCGCGGTGTGCTTGAGCGCTTTGG AACATGAAGAAAAGGTGAGGCTGCTTCCGAATTGCAAGCATACTTTCCACGTGAGTTGCATCGACACGTGGCTGACTTCC CACTCCACGTGTCCTGTTTGTCGAACCAAAGTCGAACCCACTAACACGGGACCCAAGCTCGAGCTGCAGCCGCGAGAGGG TCCCGTGTTGATAGGTCCGCATGATGCAACAGCACCCTCAGCTCCTGTTTTGTTTGAGCCAGGAGCTGAAGGCACGTCTG ATAGTTCGCCTAAAATTCATGGTTCAAATCCTTCGAGGTTGAGCTCGTTCCGGAGAATGCTTAGTAGGGAGAGATCGTTA AGGAGAATCCAACCTTCTAGTTGTGATGATATTGTTGATCATGATTTAGAGAGGCAGTGATTGAATCATTGTTCTTGATC ATATATGGTTTTGAACTTTTTATTATTTTTTCTCAGTATGTATACAGATTGATACGCACAGGCACAGGAAGAGCTATAGA AAAATTGAAAAGAAAATATGATTTGGATGCAATAATGCAGTGAATTTTTTTTTGTGTGTGCATCAGTGCATGTACCATTA TGTTCTTATTGTTCTATAGTCAAAATATGGAGATTTTTGGGTTGAATTTGATTGCTTGTATATTAATTTACTTCCTGAAA AGGATTCAGTATTTCAGTGTTTGGTAACATCGATTAAACGTAATAATGACCGCTAGCTATATATAATATGGGCAAATTAG GTGGTAGCTTAGCTCCATGTGAGCTTAGCAAATATTAATAACTTATATGGTTTTGTTTTATTGAGGCCTTACTTCCCTTA ATTTGGTGAATGG
CDS sequence (LotjaGi3g1v0448900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGTAATTTCAATGAGGATGATGATCGAGACTACAACCCATTTGTTAACTTCCATAACCGATTCTCATCAGACCA CAACAACTTCAACAAGAGGATCTTGCTGGTTGCCATAGTTTCATTATCAGCGGTGTTAGCTCTGGTTCTGGCACTTCACC TCTACGCCAGGTTCGTTCTCCGTCGCCAAGCTCGCCGTAGAGCCGCCATTCACCAACTCACCCTCACCGTCGCCGCCCAC AACACCACCCAATTCGCCAACGAAGGTCTCGACGCTACCCTCATCAACGCGCTTCCCACTTTCATCTTAAACAAATCGCA AGAAGATGAAAGTGAAGAATGCGCGGTGTGCTTGAGCGCTTTGGAACATGAAGAAAAGGTGAGGCTGCTTCCGAATTGCA AGCATACTTTCCACGTGAGTTGCATCGACACGTGGCTGACTTCCCACTCCACGTGTCCTGTTTGTCGAACCAAAGTCGAA CCCACTAACACGGGACCCAAGCTCGAGCTGCAGCCGCGAGAGGGTCCCGTGTTGATAGGTCCGCATGATGCAACAGCACC CTCAGCTCCTGTTTTGTTTGAGCCAGGAGCTGAAGGCACGTCTGATAGTTCGCCTAAAATTCATGGTTCAAATCCTTCGA GGTTGAGCTCGTTCCGGAGAATGCTTAGTAGGGAGAGATCGTTAAGGAGAATCCAACCTTCTAGTTGTGATGATATTGTT GATCATGATTTAGAGAGGCAGTGA
Protein sequence (LotjaGi3g1v0448900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSNFNEDDDRDYNPFVNFHNRFSSDHNNFNKRILLVAIVSLSAVLALVLALHLYARFVLRRQARRRAAIHQLTLTVAAH NTTQFANEGLDATLINALPTFILNKSQEDESEECAVCLSALEHEEKVRLLPNCKHTFHVSCIDTWLTSHSTCPVCRTKVE PTNTGPKLELQPREGPVLIGPHDATAPSAPVLFEPGAEGTSDSSPKIHGSNPSRLSSFRRMLSRERSLRRIQPSSCDDIV DHDLERQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 26 | 204 | 179 | 1.7E-51 | – | |
| PANTHER | 26 | 204 | 179 | 1.7E-51 | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 34 | 56 | 23 | - | – | |
| Phobius | 57 | 247 | 191 | - | – | |
| Gene3D | 76 | 162 | 87 | 4.1E-23 | ||
| SUPERFAMILY | 94 | 162 | 69 | 3.03E-23 | – | |
| Pfam | 113 | 156 | 44 | 7.2E-14 | ||
| CDD | 113 | 156 | 44 | 1.15708E-17 | – | |
| SMART | 114 | 155 | 42 | 2.4E-7 | ||
| ProSiteProfiles | 114 | 156 | 43 | 12.843 | ||
| MobiDBLite | 185 | 247 | 63 | - | – | |
| MobiDBLite | 203 | 218 | 16 | - | – | |
| MobiDBLite | 219 | 247 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0448900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…