Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0454900 |
| Transcript ID | LotjaGi3g1v0454900.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial; TrEMBL-Plants: tr|A0A072TQ66|A0A072TQ66_MEDTR PPR containing plant protein; Found in the gene: LotjaGi3g1v0454900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86826059..86828972) extracted from Lotus japonicus Gifu genome v1.2.
CGAAATTTTAACTTCCGTATTCTATTTTAGTGAATACGAAAATTAAAAATCCGTAGGGCAGTTTTGGGTTTAAAAAAAAG GGTGGGGCACGGAGCCCAATAGGGGGCCCCAAACCCAATTCCCGTTCCTCCGTTGCAAATCAAAGGAGTTTTTTTTTTTT TTTTTTTTTGTTAAATATCAATTTCTTCAACCTATCGAGAGTTACGGTAACACCACACCCTTAAACCCTAATCTGGTTTT GCCTTCTCATTTCCAGCAAAGTGATGAATCGCATTGCATCGAAATGGAACCTTAACAACACCCTTCGTCTCTTCTCTTCT TCTTCTTCTCCGACCGATTCCCTCTTCTTACGAATTTCCAGGTCCGGAGACCCTGCCATCTCCATCACTCCTCTCCTCAA TCAATGGGTTGAAGAGGGCAGACCCATCAACCATGCTGAGCTCCAATTCTTCATCAAGCAACTCAGAGCTCATCGTCGCT TCAATCATGCCCTTCAGGTTCATACCCCTCTCTCTCTCCATCTCCTATAGAAATTCCCAGAATATAGATTCATATTCCAA TTTAATTTGAATTCAATACTCTTAAAGAACTTCAAAGAATTTTTGTATGAATTTGTTTTCTACAATAATTTTTTCCAGGA CAATGTTATAGAAGTTGTGTGCTTAGAACATTTTGGTTGACATGATAGTTACTTAACTAAAGATTAGTCATTATTGGATT GTTGTTTTGCTGGTGCCAGATATCAGAATGGATGAGCAATGAAAGGAACCTTCATTTCTTATCTGCAAACATTGCTATTC GTCTCGACTTGATAGCTAAAGTCCGGGGCCTATCGGAAGCAGAGAAATATTTTAGGAGCACTCCGTACTCTTCGAGAGAT TTTAAGGTCTATGGTGCTCTTTTGAATTGCTATGCTCAACACGGCTCGGTGGAGAAGGCGGAAGCCATTATGCAGAAAAT TAAAGAATACTCCTCCAAGCGGGTAACATGCCTTGTATTGAGTTATAATGTTATGTTGAAACTCTATGCTCGGACAGGTC AATCTAAGAAATCGTATGATTTGATGCGAGAAATGATAGAGAAGGACTTATGGGACTGTGTCACAGTTAATACCTGGCTG AGGGCCCTTGTGGAAAGTAATGATATAAATGAGATGGAGAAGTTACTAGCGCAGACGGAAGTTGATCCCCTGATAACTGT GGATTGGTTAACATACTGTACTGCAGCAGATGGTTATATTAAAGCTTGCCGATTTGATAAGTCATTGGCAATGTTGAAGA AATCGGAGCAATTAATCGAACGAAAGATGAGGAGGGTTGCCTATGAATCTCTTATGATTAAGTATGCTGCTATCGGTAAA AAGGACGATGTGTATCGCATTTGGAACATGTGCAAAAACTTCAATAATATCCTCAATTCAAGTTACATAAGCTTGTTAAC TGCGTTATCAAGGTTGAATGACGTTGATGGAGCTGAGAGGATTATGGAGAAATGGGAATCTGGAAATACACGCCGTGACA TCAGAGTTCCAAATGTGATGGTGAGTATTTATTGTAAGAATGGTCTGTTGGAAAAGGCTGAAGCATATGTTGGGAGGCTT TTAGAAAGAGACAGTAAATTAGATGGAAGTATATGGGATCGTTTGGCTGGTGGCTATTACAGATGCAAAGATATGGATAA AGTAGTTGAAACAATGAAGAAAGCAATCTTGGCTGGTCGACCAGGATGGAAGGCTCACCCATTTACTTTGGCTGCATGTA TTGAGCACATGAAAGAAAAGGGAGATTCAGATTTGGCATCGGAGATTCTTAGGATGTGTGGGGAAAGAGGTTATTTCTCT GCTACTACACATGATAGATTATCAAGGTATATGCATGGTGAAATCCTAAAAACAAATGCCTTAAATCTGATTAAAGAAGA TTATGGTCTAGGCCGGGACCTTTGACGTTCCGAACGGAGAGAAGCAGATGTTGCTCCAGGGAGAGGTCAGTTACTGAATT GACATGAAATTCCCCTTTTACTCTGAAACTGGACTGTGTCCTGTTTCACAAAGTCGAACCATTTATTTAAAAATTTACAT AATGACACATAAACAAACTTCATAAATCATCATTTCAATCATCAAGGAATCACCCTTTTTTGCTAAACAGCAACTTGGGT TCTATTTTTTCACCAAAATACTTCTCTACTATCACTTACTTAGCTTCCAACAGCAAGCATTATGTTGCATCATACCATGT TGGAGTTCATCTCCTACTAATACTGTAGGTAGCTTTTGTCATTGTAATCGTATATCTCGTTCTAGTAACTTCAGTCCTCA TGCTTCTCATGCAGTAGCTATGACAAGAAGTCAACACCTATATCTCATTATGTACTTCTGTTTGTTTTGGTGACTACTGG AAAATTTCTTACTAAGGAAGATGAACAGTCAGTTTCTGTTCATAGAAGGAAGGAGAAACCACAAATCAAGGAGAAAATGC TGAAGAAAAAGAAATTTGTCCCGATATCTGCAGAAAAAAATCTCAACCTCTCCACCTCACAATTCACCATCACCTCTACC TACTAGCTCACCCTGGGCTCTCCGTTCTCCTCATCTCCATGATGTTCAAAAATCTGAGCATAATTTAATGCCTACCAAAA TGGTGAAGAAACTTTTAAGGAAGAACAAGCTGCAATGTACAATAATATGCTTACTGAAGTCAATCAAACCAGGGCTCATG CAGCATCTCTCTAGGATGATTTCTGATAGTCTCAAGTCAACATTAATGCTATCTTGAATGAAATTAAAGAGTTGTTTGTT AAAAATGAGTGGCCATTGATGCGTATTTTCTTTAAAAAAATTTGGAGGATGCTTATTATGGTGTTTGCTTTCTCTTAAAT GAATAATAGGTTACATTATGTGTTTTAATATGAT
CDS sequence (LotjaGi3g1v0454900.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGCATTGCATCGAAATGGAACCTTAACAACACCCTTCGTCTCTTCTCTTCTTCTTCTTCTCCGACCGATTCCCT CTTCTTACGAATTTCCAGGTCCGGAGACCCTGCCATCTCCATCACTCCTCTCCTCAATCAATGGGTTGAAGAGGGCAGAC CCATCAACCATGCTGAGCTCCAATTCTTCATCAAGCAACTCAGAGCTCATCGTCGCTTCAATCATGCCCTTCAGATATCA GAATGGATGAGCAATGAAAGGAACCTTCATTTCTTATCTGCAAACATTGCTATTCGTCTCGACTTGATAGCTAAAGTCCG GGGCCTATCGGAAGCAGAGAAATATTTTAGGAGCACTCCGTACTCTTCGAGAGATTTTAAGGTCTATGGTGCTCTTTTGA ATTGCTATGCTCAACACGGCTCGGTGGAGAAGGCGGAAGCCATTATGCAGAAAATTAAAGAATACTCCTCCAAGCGGGTA ACATGCCTTGTATTGAGTTATAATGTTATGTTGAAACTCTATGCTCGGACAGGTCAATCTAAGAAATCGTATGATTTGAT GCGAGAAATGATAGAGAAGGACTTATGGGACTGTGTCACAGTTAATACCTGGCTGAGGGCCCTTGTGGAAAGTAATGATA TAAATGAGATGGAGAAGTTACTAGCGCAGACGGAAGTTGATCCCCTGATAACTGTGGATTGGTTAACATACTGTACTGCA GCAGATGGTTATATTAAAGCTTGCCGATTTGATAAGTCATTGGCAATGTTGAAGAAATCGGAGCAATTAATCGAACGAAA GATGAGGAGGGTTGCCTATGAATCTCTTATGATTAAGTATGCTGCTATCGGTAAAAAGGACGATGTGTATCGCATTTGGA ACATGTGCAAAAACTTCAATAATATCCTCAATTCAAGTTACATAAGCTTGTTAACTGCGTTATCAAGGTTGAATGACGTT GATGGAGCTGAGAGGATTATGGAGAAATGGGAATCTGGAAATACACGCCGTGACATCAGAGTTCCAAATGTGATGGTGAG TATTTATTGTAAGAATGGTCTGTTGGAAAAGGCTGAAGCATATGTTGGGAGGCTTTTAGAAAGAGACAGTAAATTAGATG GAAGTATATGGGATCGTTTGGCTGGTGGCTATTACAGATGCAAAGATATGGATAAAGTAGTTGAAACAATGAAGAAAGCA ATCTTGGCTGGTCGACCAGGATGGAAGGCTCACCCATTTACTTTGGCTGCATGTATTGAGCACATGAAAGAAAAGGGAGA TTCAGATTTGGCATCGGAGATTCTTAGGATGTGTGGGGAAAGAGGTTATTTCTCTGCTACTACACATGATAGATTATCAA GGTATATGCATGGTGAAATCCTAAAAACAAATGCCTTAAATCTGATTAAAGAAGATTATGGTCTAGGCCGGGACCTTTGA
Protein sequence (LotjaGi3g1v0454900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRIASKWNLNNTLRLFSSSSSPTDSLFLRISRSGDPAISITPLLNQWVEEGRPINHAELQFFIKQLRAHRRFNHALQIS EWMSNERNLHFLSANIAIRLDLIAKVRGLSEAEKYFRSTPYSSRDFKVYGALLNCYAQHGSVEKAEAIMQKIKEYSSKRV TCLVLSYNVMLKLYARTGQSKKSYDLMREMIEKDLWDCVTVNTWLRALVESNDINEMEKLLAQTEVDPLITVDWLTYCTA ADGYIKACRFDKSLAMLKKSEQLIERKMRRVAYESLMIKYAAIGKKDDVYRIWNMCKNFNNILNSSYISLLTALSRLNDV DGAERIMEKWESGNTRRDIRVPNVMVSIYCKNGLLEKAEAYVGRLLERDSKLDGSIWDRLAGGYYRCKDMDKVVETMKKA ILAGRPGWKAHPFTLAACIEHMKEKGDSDLASEILRMCGERGYFSATTHDRLSRYMHGEILKTNALNLIKEDYGLGRDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 471 | 452 | 2.8E-172 | – | |
| PANTHER | 20 | 471 | 452 | 2.8E-172 | – | |
| Gene3D | 57 | 229 | 173 | 2.8E-19 | ||
| ProSiteProfiles | 125 | 159 | 35 | 8.857 | ||
| TIGRFAM | 128 | 155 | 28 | 1.4E-4 | ||
| Pfam | 128 | 154 | 27 | 8.6E-4 | ||
| SUPERFAMILY | 129 | 365 | 237 | 1.55E-5 | ||
| ProSiteProfiles | 163 | 197 | 35 | 8.703 | ||
| Pfam | 166 | 194 | 29 | 4.4E-5 | ||
| TIGRFAM | 166 | 194 | 29 | 1.7E-4 | ||
| ProSiteProfiles | 233 | 263 | 31 | 5.853 | ||
| ProSiteProfiles | 269 | 299 | 31 | 5.053 | ||
| Gene3D | 303 | 467 | 165 | 1.2E-15 | ||
| ProSiteProfiles | 303 | 337 | 35 | 6.39 | ||
| Pfam | 306 | 331 | 26 | 0.95 | ||
| ProSiteProfiles | 338 | 372 | 35 | 8.407 | ||
| Pfam | 343 | 368 | 26 | 0.001 | ||
| TIGRFAM | 343 | 373 | 31 | 0.0011 | ||
| ProSiteProfiles | 373 | 407 | 35 | 5.952 | ||
| ProSiteProfiles | 411 | 445 | 35 | 5.163 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0454900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…