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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0454900 |
| Transcript ID | LotjaGi3g1v0454900.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial; TrEMBL-Plants: tr|A0A072TQ66|A0A072TQ66_MEDTR PPR containing plant protein; Found in the gene: LotjaGi3g1v0454900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86826450..86828525) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCATCAAGCAACTCAGAGCTCATCGTCGCTTCAATCATGCCCTTCAGGTTCATACCCCTCTCTCTCTCCATCTCCTA TAGAAATTCCCAGAATATAGATTCATATTCCAATTTAATTTGAATTCAATACTCTTAAAGAACTTCAAAGAATTTTTGTA TGAATTTGTTTTCTACAATAATTTTTTCCAGGACAATGTTATAGAAGTTGTGTGCTTAGAACATTTTGGTTGACATGATA GTTACTTAACTAAAGATTAGTCATTATTGGATTGTTGTTTTGCTGGTGCCAGATATCAGAATGGATGAGCAATGAAAGGA ACCTTCATTTCTTATCTGCAAACATTGCTATTCGTCTCGACTTGATAGCTAAAGTCCGGGGCCTATCGGAAGCAGAGAAA TATTTTAGGAGCACTCCGTACTCTTCGAGAGATTTTAAGGTCTATGGTGCTCTTTTGAATTGCTATGCTCAACACGGCTC GGTGGAGAAGGCGGAAGCCATTATGCAGAAAATTAAAGAATACTCCTCCAAGCGGGTAACATGCCTTGTATTGAGTTATA ATGTTATGTTGAAACTCTATGCTCGGACAGGTCAATCTAAGAAATCGTATGATTTGATGCGAGAAATGATAGAGAAGGAC TTATGGGACTGTGTCACAGTTAATACCTGGCTGAGGGCCCTTGTGGAAAGTAATGATATAAATGAGATGGAGAAGTTACT AGCGCAGACGGAAGTTGATCCCCTGATAACTGTGGATTGGTTAACATACTGTACTGCAGCAGATGGTTATATTAAAGCTT GCCGATTTGATAAGTCATTGGCAATGTTGAAGAAATCGGAGCAATTAATCGAACGAAAGATGAGGAGGGTTGCCTATGAA TCTCTTATGATTAAGTATGCTGCTATCGGTAAAAAGGACGATGTGTATCGCATTTGGAACATGTGCAAAAACTTCAATAA TATCCTCAATTCAAGTTACATAAGCTTGTTAACTGCGTTATCAAGGTTGAATGACGTTGATGGAGCTGAGAGGATTATGG AGAAATGGGAATCTGGAAATACACGCCGTGACATCAGAGTTCCAAATGTGATGGTGAGTATTTATTGTAAGAATGGTCTG TTGGAAAAGGCTGAAGCATATGTTGGGAGGCTTTTAGAAAGAGACAGTAAATTAGATGGAAGTATATGGGATCGTTTGGC TGGTGGCTATTACAGATGCAAAGATATGGATAAAGTAGTTGAAACAATGAAGAAAGCAATCTTGGCTGGTCGACCAGGAT GGAAGGCTCACCCATTTACTTTGGCTGCATGTATTGAGCACATGAAAGAAAAGGGAGATTCAGATTTGGCATCGGAGATT CTTAGGATGTGTGGGGAAAGAGGTTATTTCTCTGCTACTACACATGATAGATTATCAAGGTATATGCATGGTGAAATCCT AAAAACAAATGCCTTAAATCTGATTAAAGAAGATTATGGTCTAGGCCGGGACCTTTGACGTTCCGAACGGAGAGAAGCAG ATGTTGCTCCAGGGAGAGGTCAGTTACTGAATTGACATGAAATTCCCCTTTTACTCTGAAACTGGACTGTGTCCTGTTTC ACAAAGTCGAACCATTTATTTAAAAATTTACATAATGACACATAAACAAACTTCATAAATCATCATTTCAATCATCAAGG AATCACCCTTTTTTGCTAAACAGCAACTTGGGTTCTATTTTTTCACCAAAATACTTCTCTACTATCACTTACTTAGCTTC CAACAGCAAGCATTATGTTGCATCATACCATGTTGGAGTTCATCTCCTACTAATACTGTAGGTAGCTTTTGTCATTGTAA TCGTATATCTCGTTCTAGTAACTTCAGTCCTCATGCTTCTCATGCAGTAGCTATGACAAGAAGTCAACACCTATATCTCA TTATGTACTTCTGTTTGTTTTGGTGACTACTGGAAAATTTCTTACTAAGGAAGATGAACAGTCAGTTTCTGTTCATAGAA GGAAGGAGAAACCACAAATCAAGGAGAAAATGCTGAAGAAAAAGAAATTTGTCCCGATATCTGCAGAAAAAAATCT
CDS sequence (LotjaGi3g1v0454900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAATGAAAGGAACCTTCATTTCTTATCTGCAAACATTGCTATTCGTCTCGACTTGATAGCTAAAGTCCGGGGCCT ATCGGAAGCAGAGAAATATTTTAGGAGCACTCCGTACTCTTCGAGAGATTTTAAGGTCTATGGTGCTCTTTTGAATTGCT ATGCTCAACACGGCTCGGTGGAGAAGGCGGAAGCCATTATGCAGAAAATTAAAGAATACTCCTCCAAGCGGGTAACATGC CTTGTATTGAGTTATAATGTTATGTTGAAACTCTATGCTCGGACAGGTCAATCTAAGAAATCGTATGATTTGATGCGAGA AATGATAGAGAAGGACTTATGGGACTGTGTCACAGTTAATACCTGGCTGAGGGCCCTTGTGGAAAGTAATGATATAAATG AGATGGAGAAGTTACTAGCGCAGACGGAAGTTGATCCCCTGATAACTGTGGATTGGTTAACATACTGTACTGCAGCAGAT GGTTATATTAAAGCTTGCCGATTTGATAAGTCATTGGCAATGTTGAAGAAATCGGAGCAATTAATCGAACGAAAGATGAG GAGGGTTGCCTATGAATCTCTTATGATTAAGTATGCTGCTATCGGTAAAAAGGACGATGTGTATCGCATTTGGAACATGT GCAAAAACTTCAATAATATCCTCAATTCAAGTTACATAAGCTTGTTAACTGCGTTATCAAGGTTGAATGACGTTGATGGA GCTGAGAGGATTATGGAGAAATGGGAATCTGGAAATACACGCCGTGACATCAGAGTTCCAAATGTGATGGTGAGTATTTA TTGTAAGAATGGTCTGTTGGAAAAGGCTGAAGCATATGTTGGGAGGCTTTTAGAAAGAGACAGTAAATTAGATGGAAGTA TATGGGATCGTTTGGCTGGTGGCTATTACAGATGCAAAGATATGGATAAAGTAGTTGAAACAATGAAGAAAGCAATCTTG GCTGGTCGACCAGGATGGAAGGCTCACCCATTTACTTTGGCTGCATGTATTGAGCACATGAAAGAAAAGGGAGATTCAGA TTTGGCATCGGAGATTCTTAGGATGTGTGGGGAAAGAGGTTATTTCTCTGCTACTACACATGATAGATTATCAAGGTATA TGCATGGTGAAATCCTAAAAACAAATGCCTTAAATCTGATTAAAGAAGATTATGGTCTAGGCCGGGACCTTTGA
Protein sequence (LotjaGi3g1v0454900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNERNLHFLSANIAIRLDLIAKVRGLSEAEKYFRSTPYSSRDFKVYGALLNCYAQHGSVEKAEAIMQKIKEYSSKRVTC LVLSYNVMLKLYARTGQSKKSYDLMREMIEKDLWDCVTVNTWLRALVESNDINEMEKLLAQTEVDPLITVDWLTYCTAAD GYIKACRFDKSLAMLKKSEQLIERKMRRVAYESLMIKYAAIGKKDDVYRIWNMCKNFNNILNSSYISLLTALSRLNDVDG AERIMEKWESGNTRRDIRVPNVMVSIYCKNGLLEKAEAYVGRLLERDSKLDGSIWDRLAGGYYRCKDMDKVVETMKKAIL AGRPGWKAHPFTLAACIEHMKEKGDSDLASEILRMCGERGYFSATTHDRLSRYMHGEILKTNALNLIKEDYGLGRDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 389 | 389 | 1.6E-138 | – | |
| PANTHER | 1 | 389 | 389 | 1.6E-138 | – | |
| Gene3D | 4 | 147 | 144 | 9.6E-17 | ||
| ProSiteProfiles | 43 | 77 | 35 | 8.857 | ||
| Pfam | 46 | 72 | 27 | 6.8E-4 | ||
| TIGRFAM | 46 | 73 | 28 | 1.1E-4 | ||
| SUPERFAMILY | 47 | 276 | 230 | 1.38E-5 | ||
| ProSiteProfiles | 81 | 115 | 35 | 8.703 | ||
| TIGRFAM | 84 | 112 | 29 | 1.3E-4 | ||
| Pfam | 84 | 112 | 29 | 3.5E-5 | ||
| ProSiteProfiles | 151 | 181 | 31 | 5.853 | ||
| ProSiteProfiles | 187 | 217 | 31 | 5.053 | ||
| Gene3D | 221 | 329 | 109 | 3.1E-15 | ||
| ProSiteProfiles | 221 | 255 | 35 | 6.39 | ||
| Pfam | 224 | 249 | 26 | 0.75 | ||
| ProSiteProfiles | 256 | 290 | 35 | 8.407 | ||
| Pfam | 261 | 286 | 26 | 8.0E-4 | ||
| TIGRFAM | 261 | 291 | 31 | 8.3E-4 | ||
| ProSiteProfiles | 291 | 325 | 35 | 5.952 | ||
| ProSiteProfiles | 329 | 363 | 35 | 5.163 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0454900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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