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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0458600 |
| Transcript ID | LotjaGi3g1v0458600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Secretory carrier-associated membrane protein; TAIR: AT2G20840.1 Secretory carrier membrane protein (SCAMP) family protein; Swiss-Prot: sp|A2YMP7|SCAM1_ORYSI Putative secretory carrier-associated membrane protein 1; TrEMBL-Plants: tr|A0A0B2S8U1|A0A0B2S8U1_GLYSO Secretory carrier-associated membrane protein; Found in the gene: LotjaGi3g1v0458600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87321440..87328615) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATCCGAAAAGGTAGAAGGTGGTGGGTTATAAAAGGATATGCATGAAGCTCCACCGTTTGGCACTTTCGACTCCTCA CTCATACTCACACTCACACTCAGTGCGTGTTTGTGTGTAGTGGCAGTTTCTTCCAAACAAACAAAATCCGAAAGAGAAAA ACCCGTGGATTCCAAGGCACGCAACATCATCTTCATCACTCTCCTCTCTTATCTCTTCTTCTACGATTCCCAAGATACTC GTAGATCCCTCATGAGCCGCTACGACCCCAACCCCTTCGAACACGAAGAGGTCGAGGTCAATCCCTTTGCGGTCAGTAGT TCCCTTCAATCTCCTCTCACATTTTCTCATTCCAATTTCCTGTTTCTCGCTTCGCTGTGTAATTTTTCATGTAAATATCG TTTTTATTTTTTTGTATACGGAACGGTTGGACTTGGATTGGATTCGATCCTTTCCCTTTGTTGCATTTTAGGTTATTGAT GAATTGGAACTCGTAATGTAGTGTACATAAATGCGTCTTGGTTAGGTTACTGTGGCTGGCTTCTGGATGAATTGTTGAAT GTGATTGCATAATTTGAATGTTGTTGACTGTCACTCAATTTTGAGGTTTATCTGCTTCGTATCTCAGATTAGGTCTTTCC AAAACCTAAATTTTGAGAAAATTGTTATCTGATTTTGTTTTGTTTTTACCAACGGGATGTTTACAGTTGTTGAACCATAA TTTTGCATTATAAGGCTGAACAACATTTAGCCATTTAGGTTTTAAAAAACATATATGCAGGCTTTATTTTTTTGGTGGAT TAATTCGTTCAAGCATGCTTAGGGCCATTAATTTGTTTAAGCATTTGTGACAGAACCATTACAAACAGTGGTTGATCTCG GGACGGTTTTTTGGGGTGGTAAGGTGGTTGATTAATGTAGTTAATTTATAAATATATTTGCTGAGTAATGGGGTTTGAAA AGAAACTGTGTCATTTTTCTCCTTATATCTAGCTTCCGTGTTAGACTATACATGGTTTGTTTTATATTTGATCTTCACCC ATATATTTTTGAAATGAGTAAAACTTTGAGTATTGTGTTGCGTTTCTTATTTTATTATCATTTTAAGGACTAAAGCATTA AACATTTTCATTAATTATATTAGAAAGGAGCAGCAAAAGGATCAGGGCAATCAAGTTATGGTGGAGGTGCATTTTATACT ACGGTAAGTTTTCCCTCAACTGAGACCATTGCATAACAAGCAGCACTTCACATTACCATGTTTTGACAAACATAGGAATC GGCGGTTAGCTTTTGATATGTATCCTCTGTATTTTGATTGTGAAACGGTGCAAGGGTGTTAGCTGGAACAGGTCTTACTA CCTGGAATTTGAAAAACTGGAATTTTGATATTGTAGGATTTTTCCCTTCATAAGCAGTCTAGGGACTTACTTATTCTTGA TACGCTGGAAGGTACCCATCGGTAGTGTGGTAAACTTGATAAGGTTCCACCGGAAGAAAAGGCTTTGTGTGAGTTATCTG AAGGCGGTCATGAGTTATTCTTTGTTTGGAGTTTCGAGGCTATGGAAAATAAAATCTGATCATTGGATAATTTAAGAGTG GAGCTTGCTTCTTAGTCTGTCAGTGTTCAATGTGCTCTTGTCTTGTAATCTTATAAATTAGTAGATTGCCTAGGTTTATT CCCCATATTGATTTCATAGTAAGTAGGGCAGTACAAGTTTGCAACTCAAAGGTCTGCAACAGCTAAATTTTGGTCCGACT TGCAAATATGTTATATTGTTTCTGTTTCTTGAAGTCGAGAACCAGTTTATTTCAGTGTTGTCAAATAGCGGTGCTTATTT ATAGCGTAGCGCTCTGAGGGCTCACCGCTATTCTGCCGCTATTTTCCGCTATGAGGGCTTGAAATAGCGGATTTTCAGCT TTCTGCGATTAACAACAATGGTTTATTCCTGTGAAGCTTATTTTATTTTCTTGGTACTTTTTGTGTTATTCCTTTGGTAG ACAGTTGGTTTTGGGATGGAGGTAGATTGGTGCAATTTTTTGCAAGCTGGTGTGGTGACTTGGCTGTGTTCTTTTCTGAT AATATGTCAACAGGAAACTGAATAAATGGAGCAGATACTGTAAAAATATAAGCGAACAGTTAGCAACTTTTTGTTACTTT TCAAGCATAAGATGTAAAGAAAATATTGTTTATTTATTAACTTAATACATAATTGTTTGAAATGGAAGAACCCTGGAAGT GTTCCCTCGGCAAACTCAAGGCTCTCACCACTTTCTCCAGAGCCTTATGAAAGTGGGGCAACTATTGACATCCCTCTTGA CAGCTCAAAGGTAGACTAAATTGTGAAAATGTTGAAATAAATATCAAAACTATTTGTCTCAATGCTGTATTGACCAAAGA TTTAATTATGTTCTTTTTAACTTTAGGATACCAAAGCGAAGGAGAAGGAACTTCAAGCTAAAGAGTCAGAATTGAAAAGA AGGGAACAGGTGATCCATCCTAATATGTTGCTTGATATCTTTAAAGCACAAGCACACAACTTCCATACAAGCTAAATACT TTGTTTTTCAGATTAAACATTTCGGGTGTGTTTGGGTAAACAACTTAATTAAGCGCTTATTCATAAACTAATTTGACAAG CTTAATGAAATAAGCTCAAAATAGGTTATAAGTAGGTATCAGTGCTTATTTATAAACTAATCTGAGCAGTGGATGAAAAA AAAATCAAAACAACTTATAGGTTGTAAGATAAGGTCAATAAGCTACGGGGCCTTCATTGTTATTTTATATAGGGTGAATA AATTGTAATGATTCTTTTTCTATCAATTTTAATTTCATATCATTGGGCCTAATTGGTAGCATGAGTGGCTTATTTTAATT CTTCAATCATGTGGCCACTTGTCCTTTTTCTTTTTAATATATTAGTATTACTCTATGGGTAAACCTTGGGTTGAGAATTT AGTTCAGTTTTTTAAGTAACTGTTATGTCAGATTTTTAACACCACATTTGTTTTCCTTAACCATGCTATAGATTATCTTG GCCATTAAGCTATTATATCAGCAGTGTAGTCAGGAAATTGATAATCTCATGATTTTTTTTGTAGGAACTAAAACGAAGGG AGGATGCTATAGCACGAGGTGTTTGAATTCATATATTCTTACAGAAGCTAACAAGAACAGTGTCATCATTCTGGTGTTTT ACATTTTTTTTTTGGTTTACAGCTGGAATAGTTATAGAGGAAAAAAACTGGCCACCTTTTTTCCCCATCATTCATCATGA CATTGCAAATGAAATACCAATACATCTTCAAAGGATCCAGTATATTGCATTTACGACATGGTTGGGTATGTTAAACTATA TAACTTCTGTCTAGAGTGTGTTAAAGTAGATCTACTTGCTTCTTGATAATTAATATTAACAAAATCTAGATATGTTTCTC TTATGAATTATTATCTGTAATCTGTAATTTGTAATTGATATGGAAGCTTTTAGTATAATTCACAAAATGATTTCAAAGCC GTTTTATATATGAGCGACAAAATTAGAGCTGAAATTGATATTTTACTTAAAATAAAAATTATAAAAGTACTGTCATGTCT TTCACTTAATATTTCCAGTATGTTAGTAATTAGTAACCTTATGTTTTGTTGTTATATGCTTGTTGAATGCATTACCAAAC TTCATTAATCGAAAACCTACATGTGTTTGTCTTATTAGAAATATTATTTCCTCAGTCCTCTTCATAAAAGACCTGCAATT TTTCAAGGAAGTTTCATGTTTTAAAGTGAAAGTAAATCAAACTACTTTCAACTGTGTCTATGTTCTGCTTGCGTGATAAT GTTTATCAGATTCCATTAACTATAGCAGTTCTCTTCTGTGTAAAATAGGCATTGCTAGTGCGGTCCTAAAGAAAATCACG TTATAACTTTTAAAGTCCCCCCCCCCCCCCACCCTCTCATTTCCACAATCCTTTATTGCACATGGTTCAATATCTAGAAA ATATTGCATAATATTGTGATTGTATTTTAGAATATTTTTTAGTATCTTTGATAATTTCTTAAAGTGTGTTTTCCGTAGTT TATCATTTTGCATGTTTTGTTTTCGTAATTTAGTATTTTAGATCATTCATAATTTTATTGTGTCCTGTCCTCCTTTACTA AATCCCTATAATTCCAACAGCATCAATATGCTATAAATACTCATTTTTCTTAATTTAATTATTGTATGAGTCTTAGTTTT TCATTTTTGAAATAATCTGCAGGTTTGGTTCTGTGCCTCTCGTGGAATTTTGTGGCAGTTACCACTGCTTGGATCAAAGG AGAAGGTTTGTCTTAAAAGTGTCAACTGAAAATGGGTCCATTAGTCTTGTTAGTTCATTCTTAATATTTAGAGACTTGTT TTGTGATGTAGGTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGAGCTCCAGGATCCTATGTAATGTGGT ATCGCCCTCTTTATCGTGCTATGAGGTACTGTTCAATATGATTAATCCAATTTTTGTAATTTAGCATAGGGACATCAGTT CATAAAATTTTCAGCCTGTGTTAACCTCTGAAAAAAATGTAAAACATGATGATCTATATCATCCAGCTTGATTTTGCTCA ATTATGAAGTTTCAAATATTTCACATTTTTTCTGTAAGAGCATTTTGTACTCCTGGATAACATGCGGGGAGAATGTGAGC ATTTGATAGGCATTACTATCATTGCAAAAGTTGATAAATTTTTTCGGTGCTAAGTTTACCTTCTGCAATTCTTTGATCTG ATTTTTTCTGAAGAGGGACACCAGAAGTATAAGGGTTATGAGAGGGATGGGGGAGAGGGGTGGACTCTGTTGAGGCTTTA CCTTCTTCCAAATTGCATTAAAAAGCATTGACTTGTAAAATTGTGATTTTGTCTGAACATTTATCTTGTGTCCAGAAACC AGTCTACTGCATGGATTATTCAATGGTTTATTATTGATTTTATTGTCTGATATTTCTGTTGTTTCTGTTTTATAATTGTG TACCGCCTCCTTTTACAGGACTGACAGTGCGCTGAAGTTTGGCTGGTTTTTCTTGTCATACGGGGCAAGTTTTTTTTTTT TTGTATTTTCTCACTGCACTCACTTATTCTGCACTAATTTTGTGACTCATCTCGTTTTTACTATTTTCTATAAGCAGTTG CACATCGTCTTTTGCATTTTTGCTGCAGTTGCGCCACCAATTATATTCAAAGGAAAATCTCTCACGTGAGTGTCCTTCTA ATCTACACTTTATGTTGGTATTTTGCAAACTAATTATCTTCAGCCGCTACTCTTTTATTGATTTGATCTTAGGGAGGCAA GGAAAACACTGCAGACTGTCTCTAATCATGTATTTATTGTATTTTTTGTTGTGTTTGGGTTGACTGTATGTTCTCGATGA TTTTGTAGTTCAATAATATGAGAAAAAAATTGTTTAATCGTCCACTTCTGCTCGAACTAACTTTTGTGTTTTATGCTGTT ATGTTGTGACAGAGGTATTTTGGCTGCAATTGATGTGTTGGGCGATCATGCATTGGTTGGGGTATGTTCTAACTTCTAAA TGTGTGCCTCATCACTTTTTTTTCCCCAAGTCTCATTTACATATATCTCAAGTGGTTCAAAAGTTTAGAGGATAAATGAG AGGTTAAAATCCCTTCCCTTCAAATTTTGCCCCCTCCAAAAGTGTGGGGGGGGGGGGGGGGGGGGGGGGACTTTGAAGGG AAGGGAAAGTGGCTTATAATTTATGGGCTGTAAGGTACTAAGGATTAAATTTCTTTTTTTTTTAAATTTCAAAACTGCAT TTAAATATACTACCCTACCTATTTTAGGTAATTACAGGAGTATTTCTTGGCTTCTATAATGCCCTTTAGCTTCTTAGAAG TTGCAGTTGGATACTATAATTACTGTTTCCGTCGGGTATATTTTCAAGTCATGATTTCACTTTTAATGATGTTCATACTT GTGCTGAGTTGCAGATATTCTACTTCATTGGGTTTGGATTATTCTGTCTTGAGTCACTGCTGAGCATCTGGGTTATTCAG GTTTCTATAATTTTTAACACTGTAATTATTAGTAAGTTGGGATGCTCTCTTCTCTCCTTAAACTTTCTTGTTTGACTATT TGCAGCAAGTAATGATGTACTTCCGCGGCAGTGGCAAGGCTGCAGCGATGAAGCGCGAGGCAGCAAGAGGGACAATGATG GCAGCTCTATGACGTGGCAGTAGATAATGTTTTCCCCCTATGGTTATGCCCGGAAATTGATTTCCTCAGTTACCATTATC TTATGCCTTGCTTACTGTACTTGGATTTATTTTCTTGGTTTCCTGGCAAAGATTGAATCAAACCACATGATTAAGATAGA AATCTTAGTTGTGCATATATAGAAACATTGTTTGAGATGGCTCTCTCGGCAGATGACTTTTTCATAGGATTGTTGGTGGT ATTTTTATAAACAAATGGTTTATAATTCAACTGAATTACATGTTCTGCTGACTTGACAATCGTGTCCTTTTTAACGAGAT ATAATTTTATTTGATCGTCGAGGTGATTAAACCATCACCTGCGAATAGATACTAAAACTACCACAACGTTTTAAAACTAG ATAGTCCTCTTCATCAGACCCCAGGCCCTTGCTGCAGACACTGAGCTAGGCGCCGGTGACTCTCCCTTTGACTCCCTGGA CTTATTGATGCTGGAGAGTTTCCTATGTTCCTAACATGTCCTCCTTTCCATCACGAACTATTTTGATCTTAGCCGTATTA ATTTTAAACTGTGATCGCAATTGCACTTGTAGTCGCATTATATTTTTGATATTGTGAAAAGTTATAGATAAATGTGGTTA ATATGACAATTGTGGGTGTGATCATATTTTTGATATTGTGAGAAGTTATAGATGAATGTGATTAATATGACAATTTTGGG TTCGTGATCGCAATTTAAATCACATTGATAATTCTACCTAGTTATTTACATTGATGGTAATACATGTATCTAATTTTTAA ATACAGTACAAACTCTTTAAATTAATAACGGAGAAATTTATTAATTTAAAGAGTTTTTAAGTAATTATACGGCTTAATTG CACATTTACTCCCTCATCTTTCACCATTGTGCGAAGTCTCTCCCCCATGTTTAAAA
CDS sequence (LotjaGi3g1v0458600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGAAGCTCCACCGTTTGGCACTTTCGACTCCTCACTCATACTCACACTCACACTCAGTGCGTGTTTGTGTGTAGT GGCAGTTTCTTCCAAACAAACAAAATCCGAAAGAGAAAAACCCGTGGATTCCAAGGCACGCAACATCATCTTCATCACTC TCCTCTCTTATCTCTTCTTCTACGATTCCCAAGATACTCGTAGATCCCTCATGAGCCGCTACGACCCCAACCCCTTCGAA CACGAAGAGGTCGAGGTCAATCCCTTTGCGAAAGGAGCAGCAAAAGGATCAGGGCAATCAAGTTATGGTGGAGGTGCATT TTATACTACGAACCCTGGAAGTGTTCCCTCGGCAAACTCAAGGCTCTCACCACTTTCTCCAGAGCCTTATGAAAGTGGGG CAACTATTGACATCCCTCTTGACAGCTCAAAGGATACCAAAGCGAAGGAGAAGGAACTTCAAGCTAAAGAGTCAGAATTG AAAAGAAGGGAACAGGAACTAAAACGAAGGGAGGATGCTATAGCACGAGCTGGAATAGTTATAGAGGAAAAAAACTGGCC ACCTTTTTTCCCCATCATTCATCATGACATTGCAAATGAAATACCAATACATCTTCAAAGGATCCAGTATATTGCATTTA CGACATGGTTGGGTTTGGTTCTGTGCCTCTCGTGGAATTTTGTGGCAGTTACCACTGCTTGGATCAAAGGAGAAGGTCCA ACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGAGCTCCAGGATCCTATGTAATGTGGTATCGCCCTCTTTATCG TGCTATGAGGACTGACAGTGCGCTGAAGTTTGGCTGGTTTTTCTTGTCATACGGGGCAAGTTTTTTTTTTTTTGTATTTT CTCACTGCACTCACTTATTCTGCACTAATTTTGTGACTCATCTCGTTTTTACTATTTTCTATAAGCAGTTGCACATCGTC TTTTGCATTTTTGCTGCAGTTGCGCCACCAATTATATTCAAAGGAAAATCTCTCACAGGTATTTTGGCTGCAATTGATGT GTTGGGCGATCATGCATTGGTTGGGATATTCTACTTCATTGGGTTTGGATTATTCTGTCTTGAGTCACTGCTGAGCATCT GGGTTATTCAGCAAGTAATGATGTACTTCCGCGGCAGTGGCAAGGCTGCAGCGATGAAGCGCGAGGCAGCAAGAGGGACA ATGATGGCAGCTCTATGA
Protein sequence (LotjaGi3g1v0458600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHEAPPFGTFDSSLILTLTLSACLCVVAVSSKQTKSEREKPVDSKARNIIFITLLSYLFFYDSQDTRRSLMSRYDPNPFE HEEVEVNPFAKGAAKGSGQSSYGGGAFYTTNPGSVPSANSRLSPLSPEPYESGATIDIPLDSSKDTKAKEKELQAKESEL KRREQELKRREDAIARAGIVIEEKNWPPFFPIIHHDIANEIPIHLQRIQYIAFTTWLGLVLCLSWNFVAVTTAWIKGEGP TIWFLAIIYFISGAPGSYVMWYRPLYRAMRTDSALKFGWFFLSYGASFFFFVFSHCTHLFCTNFVTHLVFTIFYKQLHIV FCIFAAVAPPIIFKGKSLTGILAAIDVLGDHALVGIFYFIGFGLFCLESLLSIWVIQQVMMYFRGSGKAAAMKREAARGT MMAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 45 | 15 | - | – | |
| Phobius | 46 | 63 | 18 | - | – | |
| Phobius | 64 | 209 | 146 | - | – | |
| PANTHER | 71 | 295 | 225 | 9.9E-161 | ||
| PANTHER | 71 | 295 | 225 | 9.9E-161 | – | |
| Coils | 143 | 173 | 31 | - | – | |
| Pfam | 183 | 294 | 112 | 1.2E-36 | ||
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 210 | 235 | 26 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| Phobius | 241 | 262 | 22 | - | – | |
| TMHMM | 243 | 262 | 20 | - | – | |
| Phobius | 263 | 273 | 11 | - | – | |
| Phobius | 274 | 293 | 20 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 294 | 312 | 19 | - | – | |
| Pfam | 307 | 385 | 79 | 5.1E-12 | ||
| PANTHER | 310 | 405 | 96 | 9.9E-161 | – | |
| PANTHER | 310 | 405 | 96 | 9.9E-161 | ||
| TMHMM | 311 | 333 | 23 | - | – | |
| Phobius | 313 | 333 | 21 | - | – | |
| Phobius | 334 | 352 | 19 | - | – | |
| TMHMM | 353 | 375 | 23 | - | – | |
| Phobius | 353 | 376 | 24 | - | – | |
| Phobius | 377 | 405 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0458600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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