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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0459400 |
| Transcript ID | LotjaGi3g1v0459400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | External alternative nad(P)h-ubiquinone oxidoreductase b2, mitochondrial; TAIR: AT4G21490.1 NAD(P)H dehydrogenase B3; Swiss-Prot: sp|F4JJJ3|NDB3_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial; TrEMBL-Plants: tr|A0A072UKI3|A0A072UKI3_MEDTR NAD(P)H dehydrogenase B2; Found in the gene: LotjaGi3g1v0459400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87407722..87414458) extracted from Lotus japonicus Gifu genome v1.2.
CTCAGATTGAATTATTTTCTTTTTAATACAGTTTAATTAAAAAAAACTAAGCTTCTTCTATTGGACAAAGAATACTAATA AGGTGTTGGTTTAATTGTAAGCAAACTAGATCTCGTAAGGATGAGAACACAAGTTTAACTTTGAAAAGTCATTTGTTGAA GTGGAACCACTAAAGTTTTCCAAATGGGTAAAAACATCTCGGTTAAAAGAAAAAATACATTGGAAATATATTGAAATTAA AACACTAGGCAACTGTTAACGTTTCTTAACTGATGTTCATGATTCATTACATAATGATCCGAGAATTAAGTCCCTGATTT CTGTGGTCAGACATTAACCGCAGCACTAGCAAATTTATCCGTGACCCTATTGTTAGTGTTCTTCTTAAGCCAAATTTCCA ACATCTTTTCTTTCTAGCCATGCATTTTTCAACTTGTTCAAACTCCGAATGCACTGCAGATCAAAAGGCAAGTGTAATAT TTTTCTTGATTTAACAAGTCAATGTAAGAACACTATTCTAAACAAAGAAAGTGCATCACATACTACGTGGCTATAACAGC TTTGACCAAGCGTTGCAGAGTTTAAAACCTTAACTAAAAAAAATCTTTTACTCCTCTATTTTTGCATGCAAAGAAAGCAG AAAGAGTGAAAAAAGTGGGAAAAAGTAACATAAAAAAGCACTAAGGAAGATAAACTAGCTAGCTTGGGATTTCACAATGC GTTGGTCTTCCTTCTATAACACAACCTCAAGGATTTTTCATGAGTATCCATCATGGTCCAAGTCTGTTGTTATATGCACT GTCATCAGGTATTGACATATTCTCACACTTTACGTTCTTGCTGCAGTTGTTATGATAAATATTTGATGTTTTATTCATTT GAGAGGAGAAAGCACTACATTTGTGTTTGAATATCTGGCAAGTTTTCACGTTTGAGATAGAAATGATTTTGGATGAAGCT TACTCAGTGCATGTGAAAATCATTCTACAATTGAGTTTAAACCAAAATCAATTATGGGGAGAAACTTCTGTTAGTAGCTT TTGAATGTCATAATATTGATTATGAGAAAGAGCAGTTGACTGAGAACAGTAAAAGTGCATCTAAACATGCAAGTAACCCC TTTTCTCTGGAAATTGGAATTCAAATTTTTCTTCATATTATCTCTCTTTTTTGGGTTGCAGTGGTGGAGGTGTGGTGGCA TATGCTGATGCCAAACCAGCACAAAGTGACAATGTTGGTCACAACCGGAAAAAGAAAGTGGTGGTTCTGGGAACTGGCTG GGCTGGAACCAGTTTTGTGAAAAACATGAAAAGCTCCTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCAT TCACTCCTCTGCTACCAAGCGTCACTTGTGGCACAGTGGAGGCTCGCAGCGTTGTCGAACCGATTCGCAGCATCTCCCGG AAGGTATTCTCTTTCCCTTATATCATAGTCATTTTCAAATCTTCATCTTTACTTGTGCAATTTGAATAATTTGAGTATGC AATGTACATCTTATCATGCCATCAAACCTAAGTAACTCATCACTTAGAATGTTCTTCATGCCATGGCATTAAATTGGGGT AGCAGTTGTGTCGCAATCCTTGAAATTGAGAGTAAATGTGACCAGGGTTTCAAATTGTGGTTTGCAACTGCAATTGTGGT CGTAATGTAACGGGATTTTGGTGGAGTCCCTGCATCGCCACCTCGACCGCATTTGAATTCAAAGATATTAAGAAACATTA TGTTTGATAAATTATGCATAGTGTTTCAGCTTCAAAGATGTTTGATTAAACTATATCATAGTATACTTATAAGTGAATTC GGTTCATGCCCTGCATCAGAGTGGTCTAGATATTCAATTCAGTGAAGCTGAATGCTACAAGATCGATCCCAAGAACAACA AAGTTTACTGCCGTTCTGGTCAAGACAAAAAGCTAGGTGGCCCTGAAGAATTTTCCCTTGATTATGATTACTTGGTAATA GCAATGGGAGCACGTTCTAATACCTTCAACACACCTGGTGTTCAGGAGCATGCTCACTTCTTGAAGGTACACATATATAT ATTTTCATTTCACTCTCTTAGGGAAAAAAACATCTCTGAGGAAAAAGAAACTTTTGTTTAGCTGAACTACTCTTGAATCT TTCTGAAGGAAGTGGAAGACGCTCAAAGAATCCGCCAAACAGTGATTAACCTTTTTGAAAGGGCAAGCCTCCCTTCTTTA TCTGAGGAAGAGAAGAGAAAGCTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCT TCATGACTTTGTACATGAGGATCTATCTATATTGTACCCTTCTCTTAAAGACTATGTGAAGATTACTCTTCTGGAAGCAG GCGATCATATCTTAAACATGTAATATTTTTTTAATTCTATTCGGATATAAAGGCTATTGCTTAACTGAAGTAAAAAATGA GCATGTGAAAATTCACAATATTTGGATGTATAGTGTTTAAGAGTGAATTGTCAATTTGGTCCCGGAAAGATTTTGGCATT GGTAATTTAGCTGTTAGAAGAACGAAATGTGTTTGAAAGTTCCTAAATGTGTAAAACACCGGTCTAGTTAGCCCTTCAGG ACATATTTGGTAAGCTAAAATGTCGGTCAAAGACTAACTTGACTGACAATTTACACGTTCAGGGACTTTCAATATATTTC AGCCTTCTCGAGACTAACTTGATAGCGACAAAATCTTTAAGGGATCAAGTTGACCATTCACTTAGTGTGTAAATAGGGTG CTAACTTGCACACTTTTCACTCTATTTCAGCATTCTCTTTTGCCATTTGCAACTTCAACTCTTTTTTTGTTTTCTTTCTA TTTGATTTTTCAAATGTGCATTGGTGATATAGTTTATTGGTTTAATGCAGGTTTGACAAGAGAATTACGGAATTTGCTGA AGAAAAGTTTTCCAGAGATGGAACTGATGTAAGGTTGGGATCTATGGTTGTCAAAGTTAGTGCAAATGAAATCTCTGCCA AAGAAAGAAGCACTGGTGAAGTTGTTTCTATACCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTCCTCGCCCTGAA ATACTTGAGTTCATGAAGCAGCTTGGCCAGGTTTGTTTCTTTTTGTTTCCTTCTCTCAATCTAAAGGCTCGGTTTGGAAG TAAGTCACACAATTTTTGCTTGCTTTGAATTCTCTGTGAGACAGATTAACAGACGTGCAATTGTTACTGATGAATGGCTA AGGGTAGAAGGATGTGACAACATCTATGCTCTAGGTGATTGCGCCACTATAAATCAGCGTAGAGTTATGGTATGTGACTC TGTGCAATCTATAAATTGGATATGTCTATCAGTCTACCCTCCTACTAGTCCTGAAATATTACTTTCTTTTTCATTCATGA GTTAAAAATAACTTGCAGCCTTTGAACATGTTTGGATCAGTTTGTTTTTCTTCTCACAATCAATTTTGGCATTCATAAGC TACTCATAAAAAGTTCTCTCCAGAATTGATTTTGGCTTTAAAATAAATTGGATAACATGTCTGTATCGACCTCTCTTACC TCCGAATCAATACTAACAATTAAAAACTACTAACATAAACTCCTCAGACTACTTTCTTTTTCATTCACGAGTGATTAATA ACATGCAGCCTTTTAGCATGTTTGGATTAGTTATTTTCGTCAGAATCAATTTTGGCACTAACAAGCTACTCATACAAGCT TCTCTGCATAATTGCTTTTGGTTTTAGAATCAATTGTATATGTATGAATCAGCTTTTCTTATCTCATAATCAATTTTGAC ACCCTGATTCTTCTCCCAAAATTGTTTTTGCCTTTTAGAATCAATTGGAGAAGAATTTCCAAACAAGCAATTTATCTTTA TGGATCTATATCAATCACCTTCTTTCTGTTGTAACCGATGATCTTTCATTTAGCCTATAATATGATTTTGGAATGAAAAC AGTAGTAGCCACTCCACCCAATTATAGTTCCTGTTGATAAATGACATGTTATTTTTATAAGAAACCATTAGCATTTTAGC AACACAATTTGGGCAGCAATTCTCTGCTGAATTTCAGTATGACATTTTGAAGTTTTGAAGTGTTCTCCTTTTGTTTGCCA TGGTTTTACCAGGAAGATATAGCTGTCATATTTAGCAAGGCAGACAAAGACAATTCTAGGACATTGGATATTAAAGAATT TCAAGACGTTGTTGGTGACATTATTGAGAGGTACCCACAAGTGGGGATTTATTTAAAGAAGAATCAAATGAAAGATATGG CTACCTTGCTAAACAAATCTCAGGAAAGCTCTCTTACAGTAGACATTGAGTACTTCAAAGAAGCACTTTCCAAAGTAGAT TCCCAGATGAAAAATCTTCCTGCAACAGCTCAGGTACGTGCACATTATGTGCTATGTACTTTTCAATTATGCTTGATAAA TTATCTACTTAGGAAATGTCCATTTTCATGTGACCTTGACATGGTTTTTCATATCGATCCCTGCACTTAAGAAATATGAA TTGAAGTCTTAGAGCTATATTTGAGGGCTAGCGTGACTACAAAAAGATAGATTGAGGATTAAGTTGACTTAAAGAAGCTC AGGTGAGGACCTTTGTTCATGTTTTTTTCAGTGTAAGGGCTAATATAAAAAATCGTGTCATGGTCGGCCATGAAAATGAC ATGCACTCATTTACTATTATGGTGCATGTTTGGATAACAGTTTAATAACGTGAACTAACTTTCATTTCAATCCTAAGAAG AGTTTCATTCTTCTTTTTTTTTTTCCCTCGAAGTGAGTTCTAACTTCTTCAGTGACAACATATATCCAAACATAGCCTAT AAAAGTTTGTCATATTACTTATGCTTTGGTGGTGGGTTCCAACTTTGAATCATTCTAGGTAGCTTCTCAACAAGGCATAT ATCTTGCTGACTGTTTCAATCGCATGGAGTTGTGTGAGAAGTATCCTGAAGGCCCTCTTAGGTTCAGGGGTACAGGACGC CATCGGTTTCATCCCTTTAGGTATGTGCAACTTGCAACTTCAACAAAAAGTGTCTCAAGATGTGTTAATTTCCTGTTTTC ATACTTTCCAAAGCGTATTCAATCGAGCTCATAATAACATCCAATGATTCAAGTTTCTCATTGCCTAATGTTTTTTTAAT TAATGAAAGGTACAAGCATTTTGGGCAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGA TTTCAATTGGCCATAGTAGCCAATGGCTCTGGTATTCAGTATACACAAGGTATTATTCTATTTCATATAAACTGCATTTT AAGAGGTTTAATGGTAGTGTATTTTCATCCTCTAACTATTCCCAAACATACAACAGCAAGCAAGTCAGCTGGAGAACAAG AGCTTTGGTGGTATCTGACTGGACAAGGCGATTCATATTTGGCAGGGACTCAAGCCGAATCTGAAGATCCACTTCAAAGC TTGCACTACACTTTAAGGTCTACTTCATATAGAATTCTTGGCAAGACAAGACCTCAAAGGGCACACAAAAGGAAAAGGAA AAAGAATACTATGTTTAATTTTCTCATTCAAACGGATTTTCTGTTATATATTCATTTTAGAGATCATGTAATAATCTGAT CAATTAAATACTTAGTACAAAGAGCTTTACAGCTCGTAGTAGTCTCATTCAACTCAAACATGATTGTCTTAGCGGAGAAT ACCATAATCTAAACCGAAGTAATTTTCCTCATCAGTAAATGAATGCTTAAATTTGATTTTGGTTGCTAAACACAAAAAAA GGCCATGCTTACAAGCTTGACATCATCTAGTTTGCAAAATTGCAATATTCAATTTGGACTTTACATGAGTTTCTTTGCTT CCAATCTCCCATATAAAATTCCATTCCATAATTTGAAATCATAAATGTCTGGTTACCATTAACAACTATTAAGCCCATTA TAGGGGGTTTTCTGGACCAGGAAATTCAGATTTCAGACCAAATGCTGCCCAAGGAGAATGAAGAGATTGTCCTTTGGTTT TGTATGCTAGATTTTGGAATGAAAAGCATGCACAATTTACAAAAACAAACAAAATTTACTCTGTAAAATGGGAAATTTCA TTTTCTTCTATACATCTTCAATTTACAGTTTACCATTTACAACAGCAACCTGAAACAGCATCATTCATTCTCTTCCCCCC AACACAAGTTACAAACACAAACTCAACTCAACAATGGTCAGAGTGAGCTAGACCTGACCCCAGCAGTTGAAGTACATAAC TTTCCGGAGAGAATCATCAGCCTGGACATCACAGTTCTTCATCAGCTCCGGTGAGTCCCCGGCGGAGAACAACCTTGTCC GGTTGTGGCGTTTTGCGGCTGCCACGGTGGTGGCCATCCAAATGCGGATCAACATGTAACTCATATTTTTGTGTGAATAA CAATACTGCTAAGGAAGGCTAATGCTGGTTTTCCAGGGTGGGGCCTTATCTTTATCAAAATATAAAATAAGTTATTGATT GGCTTAGAGCCAGACATTTATGGATAAGGATTAGAGTCAATTTAGATAAACTTTGTTTTTCCCTTTTCATAAAAAATACA AAATAACTGTGTTACTAAGTAGGCATCTTACTTTCAAAAAAAAAAGTAGGCATCTTAACACTTGGTATTTCGTTTAGGTA TTGTAAAATGTAAAATC
CDS sequence (LotjaGi3g1v0459400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTTGGTCTTCCTTCTATAACACAACCTCAAGGATTTTTCATGAGTATCCATCATGGTCCAAGTCTGTTGTTATATG CACTGTCATCAGTGGTGGAGGTGTGGTGGCATATGCTGATGCCAAACCAGCACAAAGTGACAATGTTGGTCACAACCGGA AAAAGAAAGTGGTGGTTCTGGGAACTGGCTGGGCTGGAACCAGTTTTGTGAAAAACATGAAAAGCTCCTCCTATGATATT CATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCTCTGCTACCAAGCGTCACTTGTGGCACAGTGGAGGCTCGCAG CGTTGTCGAACCGATTCGCAGCATCTCCCGGAAGAGTGGTCTAGATATTCAATTCAGTGAAGCTGAATGCTACAAGATCG ATCCCAAGAACAACAAAGTTTACTGCCGTTCTGGTCAAGACAAAAAGCTAGGTGGCCCTGAAGAATTTTCCCTTGATTAT GATTACTTGGTAATAGCAATGGGAGCACGTTCTAATACCTTCAACACACCTGGTGTTCAGGAGCATGCTCACTTCTTGAA GGAAGTGGAAGACGCTCAAAGAATCCGCCAAACAGTGATTAACCTTTTTGAAAGGGCAAGCCTCCCTTCTTTATCTGAGG AAGAGAAGAGAAAGCTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTTCATGAC TTTGTACATGAGGATCTATCTATATTGTACCCTTCTCTTAAAGACTATGTGAAGATTACTCTTCTGGAAGCAGGCGATCA TATCTTAAACATGTTTGACAAGAGAATTACGGAATTTGCTGAAGAAAAGTTTTCCAGAGATGGAACTGATGTAAGGTTGG GATCTATGGTTGTCAAAGTTAGTGCAAATGAAATCTCTGCCAAAGAAAGAAGCACTGGTGAAGTTGTTTCTATACCTCAT GGAATGGTAGTTTGGTCAACTGGTATTGGTCCTCGCCCTGAAATACTTGAGTTCATGAAGCAGCTTGGCCAGATTAACAG ACGTGCAATTGTTACTGATGAATGGCTAAGGGTAGAAGGATGTGACAACATCTATGCTCTAGGTGATTGCGCCACTATAA ATCAGCGTAGAGTTATGGAAGATATAGCTGTCATATTTAGCAAGGCAGACAAAGACAATTCTAGGACATTGGATATTAAA GAATTTCAAGACGTTGTTGGTGACATTATTGAGAGGTACCCACAAGTGGGGATTTATTTAAAGAAGAATCAAATGAAAGA TATGGCTACCTTGCTAAACAAATCTCAGGAAAGCTCTCTTACAGTAGACATTGAGTACTTCAAAGAAGCACTTTCCAAAG TAGATTCCCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTTCTCAACAAGGCATATATCTTGCTGACTGTTTCAAT CGCATGGAGTTGTGTGAGAAGTATCCTGAAGGCCCTCTTAGGTTCAGGGGTACAGGACGCCATCGGTTTCATCCCTTTAG GTACAAGCATTTTGGGCAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTG GCCATAGTAGCCAATGGCTCTGGTATTCAGTATACACAAGCAAGCAAGTCAGCTGGAGAACAAGAGCTTTGGTGGTATCT GACTGGACAAGGCGATTCATATTTGGCAGGGACTCAAGCCGAATCTGA
Protein sequence (LotjaGi3g1v0459400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRWSSFYNTTSRIFHEYPSWSKSVVICTVISGGGVVAYADAKPAQSDNVGHNRKKKVVVLGTGWAGTSFVKNMKSSSYDI HVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSISRKSGLDIQFSEAECYKIDPKNNKVYCRSGQDKKLGGPEEFSLDY DYLVIAMGARSNTFNTPGVQEHAHFLKEVEDAQRIRQTVINLFERASLPSLSEEEKRKLLSFVIVGGGPTGVEFAAELHD FVHEDLSILYPSLKDYVKITLLEAGDHILNMFDKRITEFAEEKFSRDGTDVRLGSMVVKVSANEISAKERSTGEVVSIPH GMVVWSTGIGPRPEILEFMKQLGQINRRAIVTDEWLRVEGCDNIYALGDCATINQRRVMEDIAVIFSKADKDNSRTLDIK EFQDVVGDIIERYPQVGIYLKKNQMKDMATLLNKSQESSLTVDIEYFKEALSKVDSQMKNLPATAQVASQQGIYLADCFN RMELCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSSQWLWYSVYTSKQVSWRTRALVVS DWTRRFIFGRDSSRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 575 | 572 | 0.0 | – | |
| PANTHER | 4 | 575 | 572 | 0.0 | – | |
| Gene3D | 46 | 405 | 360 | 1.9E-135 | – | |
| SUPERFAMILY | 54 | 273 | 220 | 5.51E-30 | ||
| Pfam | 55 | 380 | 326 | 1.6E-62 | ||
| PRINTS | 57 | 76 | 20 | 1.5E-9 | – | |
| PRINTS | 160 | 178 | 19 | 1.5E-9 | – | |
| SUPERFAMILY | 217 | 374 | 158 | 9.5E-20 | ||
| PRINTS | 221 | 239 | 19 | 1.5E-9 | – | |
| PRINTS | 349 | 371 | 23 | 1.5E-9 | – | |
| SUPERFAMILY | 371 | 461 | 91 | 3.49E-6 | ||
| ProSiteProfiles | 377 | 412 | 36 | 10.441 | ||
| ProSitePatterns | 390 | 402 | 13 | - | ||
| Gene3D | 421 | 575 | 155 | 1.0E-26 | – | |
| Coils | 572 | 575 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0459400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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