Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462300 |
| Transcript ID | LotjaGi3g1v0462300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT4G15210.1 beta-amylase 5; Swiss-Prot: sp|O22585|AMYB_MEDSA Beta-amylase; TrEMBL-Plants: tr|I1LRU3|I1LRU3_SOYBN Beta-amylase; Found in the gene: LotjaGi3g1v0462300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87735616..87741252) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCTAATCCTAAATCTTGTAAGAAAAATGTTATTCCTTGATTCCTTGCCCCTTTTTTAATGCATTTAAGACATGGATA AAACAACTGAAGTTTAACTGATAAAAGAAGGAGCATCTTAATAAAATATTTTCAGCATACATTAAAACCTAGTCAACTTT CTTTTCCTTTTTTCTGTACCATAATTCTTCTCTCTTTATTTTCCTCCTTCTTAAAAAGCCCCCCCTTGATCGTGACTTCA AAGCAAGCAGCAACTTCTACTTAACATCTCCCTTTTCATCTTCACAGATATCATATCAGAGAGCTTCACAAGCGGAAAGA TGGCCACTTCAGAGAGAAACATGCTGCTGAATTATGTCCCAGTTTTTGTCATGCTCCCAGTAAGTCATCCACAAACTATT GTGTTTCTAAGCTCCCAATTTATGCAATTGAATATAAAATACAGAATCAGCTTATATGTGTGTGCTAATTATCAATAACA TGTTTTCCTGTTTTTCTTTGTAACTCCATTAGCTTGGAGTTGTAAGTGTTAGCAATGTCTTTGAAGACCCAGCTGGCCTC AAAGAACAGCTCCTGCAGCTGCGAGCAGCAGGAGTTGATGGGGTTATGGTTGATGTCTGGTGGGGGATCACAGAACAGAA GGGGCCTAAGCAGTATGATTGGGGTGCCTACAGGAGCTTGTTTCAGCTGATTCAGGAATGTGGCTTGAAACTGCAGGCGA TCATGTCATTCCACCAATGTGGGGGGAATGTAGGGGATGCTGTTAACATTCCCATTCCCCAATGGGTACTTGACATTGGA GAATCAAATCCTGATATCTTCTACACTGACATCTCAGGTACCAGGAACAAGGAATATCTAACTGTTGGTGTAGACAACGA GCGTATCTTCCATGGAAGAACAGCCATTGAGGTGAGCCCTGTGAATTAGTATAATCTCTTTCTTATGACTAGCTTTCATG CCGTCATGTGATTTGCAACTCTGCAACAAAAATGACTAATATTACTTCAAACACAAAATTAAGTAAAATTTGTAGATTTG ACTCGCATAAATGCATGTCTAAACAAAACATAACAAGTTTTATCCCGCTAAGTGAGGTCGGCAATATGGATCGCATTATC CATATTAAATACACGGTCAGTTTTACGTCGGCTGTCTCAGACCTAACACAATATTCCTCCTTTATCCAGGCTTAGACTGG CTATGACATATGTCCAGAACAAACTTGTTTGGGAATCCAGTTTCCAACAACATTGATATAGTATACTAAAACAAATAGAT TCAGTATATCTGTTCATTTCAAATCAGATAATATTCATTTTGGATTTAAAAAGATTGACACAGTTCCGAGAACTTCTAAA TGTACAGTTATAACTTATAATGATCTTGGACATTGAAGTAGTTGCTAATAATAATTTTGGGTTTAAACTTGTTGGTTTAC CCAGCTATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTCTTAAAATCTGAACTTATTATAGACATTG AAGTTGGGCTTGGTCCAGCAGGAGAGCTCAGATATCCCTCTTATCCACAAAGTCAAGGGTGGGAATATCCTGGTATTGGA GAATTTCAGGTGAGTCTGGCCTGGCTTTCAAACAAAATTGATTTTAACTCGATCAAACTTGGATTTCAGCACTAAAAGCA TTAGAAAAATAAAATTCTGCAGTGCTATGACAACTATTTGAAGGCAGATTTCAAAGCGGCAGCAACAAGGGCTGGCCATC CTGAATGGGAACTACCAGATGATGCAGGCAAGTACAATGATGTACCACAATCTACTGAGTTCTTTAGATCAAATGGCACA TACCTCACTGAGAAAGGGAAGTTCTTCTTGACTTGGTACTCTAACAAACTGCTGAACCATGGTGATCAAATCCTAGATGA AGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAAATTAGCACTCAAAGTAAACTTCATGACACCTTAATCAACACTTGTCC CCTCCATTCTCTGCCAATTAATTAACCAACAACCATTGATAATAGGTCTCTGGAATCCACTGGTGGTACAAATCCGAAAG TCATGCTGCTGAGCTTACTGCTGGATATTACAACCTTGGTAATAGAGATGGATACCGTCCAATTGCAAGAATGCTGTCCC GTCATCATGCCATTTTGAACTTTACATGTCTTGAGATGAGGGATTCAGAACAAAGATCTGATGTCGATAGTGGACCAGAG GAACTTGTTCAGCAGGTAATGCATTATTATAATTTTAGTTTAATGCTTGCTCTATATGTTAAAGATGACGCCAACGATAA ATACTGTGTAGCAGTGGTAAAATTGCGATCCATTAACGTATGCTCAGGTATTGAGTGGAGGTTGGAGAGAACACATCGAA GTTGCTGGAGAAAATGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCATATTGAATGCAAGACCACAAGGTGT CAACAAAGATGGCCCTCCAAAGTTTCGGATGTATGGAGTAACATACCTTCGTCTATCGGATGATCTACTGCAACAATCAA ATTTTGACATATTCAGAAAGTTTGTGCAAAAGATGCATGCAGATCAGGTGAGCAGTGGTCATGCATGCACTAAAATAGAT AATATTTTGAACTGTCTTCAGCTTCATAATACCTTGCTTCCTTATAACCCTCTCCTCGAATTGCAGGATTACTGTGCAGA CCCTGGAAAGTACGGTCATATCATACCACCATTGAAGCGATCAGGGCCAAAGATACCCGATGATGTTCTTCTCAAAGCAA CTGAACCTATGCCGCCGTTCCCTTGGGATTCAGAGACAGACATGGAAGTTGATGGTTGACTTTCCGGTTCCATGGGAAAA TGATTGAAGATAACAGCTGGAAATAATATCTACCCTTCAGGTTAAGAATAAAGCAGCTACATCTGCAATATTCCCATCAA TGTAGCAATCTCTAGACACCAGAAATATCTACTAGTGTGAAATTCTATGTGTGATTTCCGATCTACAAATTGAATAAACT ATTTTATTGAACTTCCTCCAACTCTGATTTTGTCATGACATGAAAATTTCCATCCCTAAAATGGTGAAATCTATTCAAAT GTGATTACTTAATCTTGTGCCCAACACCCAACATAAAGTTGAGTGTTGACGTGCCACCATAATCTGAGCGATCCATTTGA GAACCAAAGGAAAATAAGACACTAATCAGATTAGGAAGATACTCCTGCGGCATCTGTAATGCTAATGATGATGCCACAAT GTGGCAATTTGAAAACATCTTAAAAATCTAGTCATGTAAGATAAAAAATCTGAAATTTTCTATGTTTGGACGTAAAATAC TTATTTCTAATTATCATATTTCTAAAAACAAAAATCTGAAATTTTCATTATTTCGGATTTAATTTTGTATTTTAACAAAC TTCCATCAACTCACCAATACCCACCGCATGAGCATATACCATCTCTAAAATGGTGAAACCTACAGATATCTCGCATGATA ATCTCTCGACTCATAAGCTTAGAAACCATTTTCATTACAGTGTGGCAATCTACACACACACGAAGATTCTTGGTTATTCT GATTGTGGTTCCTGGACCAGTGTTAATAAGGGCAAAAGCAAGTGCCAACCTCTCACTATGATCCCAGAGCATTTTCTCCT TTACTTCTGCCTCAACATCATAAAGAACTGAACTAGTGTCAGGCATGTACCCCACTTTCTTCAGTTGCTCATTCAAGTCT TTCAGTTTGGCATAAATATCATCTGACTGTTGGTGGGACGTATCTCCAGCAAAAAATTGATGAACCATCTTATTTAGCTC AAAAAAACTGTAACTAGGTGGTTTCCTCAATCTCTTCTTTGTTACCTTTTTCCTCACCTTTTGAACATCCTTCCACCGTT TCTCAGCAGCATAGATGTTGGAAAGGCAAACATAGCCGCTCACTTTATTTGGATCCATTTCAAAAAGCTTCTGGGCTGAT ATCTCTGCTAACTTGACATTCCGATGTAATCTGCAAGCAGAAAGAAGAGCAGTCCAAACATCCTCATTAGGTTTCAATTT CATGTTGTCTATAGTTGCATATGCTTCATCTAATTTTCCTGCCCTGCCAAGTAGATCCACCAAACATGAATAATGAGTGG TTGTAGGCTCCACATTGTAGTCTCTGGTCATTTTATAGAAAATTTCTTTACCCTCATCCACTAATCCAGAATGACTACAA GCTGATAAAACTGCCGTGAAAACGCCCTCATCTGGAGTAATATTTTTACCTAACATTTCATTGAAAATGGAAATGGCCTC TCTTCCCTTGCCATGAATTCCAAATCCTGTAACCATAACTGTCCAGGAAGCCAAACTTTTATCAGGAATCTCATTGAAAG CGCGATGTGCACAAAGGAAACTTCCGCAGTTAGCATACATGCTTATTAGGGAAGTTCCCACAGCAGTATTCATTCCATAA CCCTTTTTAACAAGATATGAGTGAACAGATGAACCCAATAGCAAGGCCGAGATTCGACTACAAGCCCCAAGCACAGAAAT AACAGTCACTTCATCAGGAACTGCACCTCCTATAAACATTTGACCGAAAAGTTCCAGAACTTGAAAAGCACCCCCACACT TTTCATAGCCAGAAATCAATGAATTCCACGATACAGTATCCTTCACTGCTAACCCTTCAAATAGTTTCCTTGCACCAGAT ATGAAATCACAATTGCAGTACATATCAATCATTGAATTCGTCACAAACTCATTATTAGACAGTCTCCCACTATTCCTAAC AACATAACCATGAACCGCTTTCCCCAGCTTCAAATCCATAAGATCACCACAAGCGCTGAGTAAGGCAAGCATGGTGGTCC CATCTCCAACCAAGCCAGATCTTCTCATGTGATCAAAAACCACAAAAGCATCCCCCGCCTCACCATTCTTCACATACCCC GACATCATCGTGTTCCACGAAGTCAAATCCCTCACAGGCATTTTATCAAACACCAACCTCGCAGTTCCCATATCACCAAA TTTCAAATACATCGAAATCAAAGAATTTCCCACATAAACATCCGACTCCAACCCATCAACCACCACCAAACCATGAACTC TTATCCCCATTTCACGAAGCAGAAGGTCCCCACAAGCCTTGAGAACAAAAGGGTAGGTGAAATTATCAGCCTTCTGTCCA AAACTCAGCATTTCACGGTACAAAACAAGGGACCTCGAGCTCGAGTTTCCACCAGCGCTACAAGCATAGCCCCTGATCAT AGAATTCCATAAGAATGAATTCTTGAAGACGATTTGATCGAATATGAGTTGTGCTTGAGGCATGCGGCCACAGGCGGCGT AGCAGGCGGCGAGCTTGGTGGAGAGGTAGGTGTTTTGGAGGAGAGTGCCGCAGGTGATGATGTGGGCATGGAGTTTCTGG GCTTGTGTGAATGATTTGGAGTTGGTGAGTGATTGCAACAAGGTTCCGCATTGTAGAGAATCGAGGGGGAGTGTGAGGGT AGGAGCATTGCGGAGAAGGGTTGTTGTTGTTGTCTTCATGAATGATGAAGGTGGAGATTACTTACTACATGTACGAGGAG AAGAGAACAGAACATGAAACAAGACAATGGAAAGGAG
CDS sequence (LotjaGi3g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTTCAGAGAGAAACATGCTGCTGAATTATGTCCCAGTTTTTGTCATGCTCCCACTTGGAGTTGTAAGTGTTAG CAATGTCTTTGAAGACCCAGCTGGCCTCAAAGAACAGCTCCTGCAGCTGCGAGCAGCAGGAGTTGATGGGGTTATGGTTG ATGTCTGGTGGGGGATCACAGAACAGAAGGGGCCTAAGCAGTATGATTGGGGTGCCTACAGGAGCTTGTTTCAGCTGATT CAGGAATGTGGCTTGAAACTGCAGGCGATCATGTCATTCCACCAATGTGGGGGGAATGTAGGGGATGCTGTTAACATTCC CATTCCCCAATGGGTACTTGACATTGGAGAATCAAATCCTGATATCTTCTACACTGACATCTCAGGTACCAGGAACAAGG AATATCTAACTGTTGGTGTAGACAACGAGCGTATCTTCCATGGAAGAACAGCCATTGAGCTATACAGTGACTACATGAAG AGTTTCAGAGAAAACATGTCAGATTTCTTAAAATCTGAACTTATTATAGACATTGAAGTTGGGCTTGGTCCAGCAGGAGA GCTCAGATATCCCTCTTATCCACAAAGTCAAGGGTGGGAATATCCTGGTATTGGAGAATTTCAGTGCTATGACAACTATT TGAAGGCAGATTTCAAAGCGGCAGCAACAAGGGCTGGCCATCCTGAATGGGAACTACCAGATGATGCAGGCAAGTACAAT GATGTACCACAATCTACTGAGTTCTTTAGATCAAATGGCACATACCTCACTGAGAAAGGGAAGTTCTTCTTGACTTGGTA CTCTAACAAACTGCTGAACCATGGTGATCAAATCCTAGATGAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAAATTAG CACTCAAAGTCTCTGGAATCCACTGGTGGTACAAATCCGAAAGTCATGCTGCTGAGCTTACTGCTGGATATTACAACCTT GGTAATAGAGATGGATACCGTCCAATTGCAAGAATGCTGTCCCGTCATCATGCCATTTTGAACTTTACATGTCTTGAGAT GAGGGATTCAGAACAAAGATCTGATGTCGATAGTGGACCAGAGGAACTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAG AACACATCGAAGTTGCTGGAGAAAATGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCATATTGAATGCAAGA CCACAAGGTGTCAACAAAGATGGCCCTCCAAAGTTTCGGATGTATGGAGTAACATACCTTCGTCTATCGGATGATCTACT GCAACAATCAAATTTTGACATATTCAGAAAGTTTGTGCAAAAGATGCATGCAGATCAGGATTACTGTGCAGACCCTGGAA AGTACGGTCATATCATACCACCATTGAAGCGATCAGGGCCAAAGATACCCGATGATGTTCTTCTCAAAGCAACTGAACCT ATGCCGCCGTTCCCTTGGGATTCAGAGACAGACATGGAAGTTGATGGTTGA
Protein sequence (LotjaGi3g1v0462300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSERNMLLNYVPVFVMLPLGVVSVSNVFEDPAGLKEQLLQLRAAGVDGVMVDVWWGITEQKGPKQYDWGAYRSLFQLI QECGLKLQAIMSFHQCGGNVGDAVNIPIPQWVLDIGESNPDIFYTDISGTRNKEYLTVGVDNERIFHGRTAIELYSDYMK SFRENMSDFLKSELIIDIEVGLGPAGELRYPSYPQSQGWEYPGIGEFQCYDNYLKADFKAAATRAGHPEWELPDDAGKYN DVPQSTEFFRSNGTYLTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLALKVSGIHWWYKSESHAAELTAGYYNL GNRDGYRPIARMLSRHHAILNFTCLEMRDSEQRSDVDSGPEELVQQVLSGGWREHIEVAGENALSRYDATAYNQIILNAR PQGVNKDGPPKFRMYGVTYLRLSDDLLQQSNFDIFRKFVQKMHADQDYCADPGKYGHIIPPLKRSGPKIPDDVLLKATEP MPPFPWDSETDMEVDG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Gene3D | 2 | 496 | 495 | 4.3E-232 | – | |
| PANTHER | 3 | 478 | 476 | 1.1E-289 | ||
| PANTHER | 3 | 478 | 476 | 1.1E-289 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| SUPERFAMILY | 9 | 491 | 483 | 3.76E-200 | ||
| Phobius | 12 | 30 | 19 | - | – | |
| Pfam | 16 | 438 | 423 | 3.5E-122 | ||
| Phobius | 31 | 496 | 466 | - | – | |
| PRINTS | 47 | 61 | 15 | 1.1E-97 | ||
| PRINTS | 68 | 86 | 19 | 1.1E-97 | ||
| PRINTS | 90 | 111 | 22 | 1.1E-97 | ||
| ProSitePatterns | 94 | 102 | 9 | - | ||
| PRINTS | 173 | 182 | 10 | 2.7E-41 | ||
| PRINTS | 183 | 205 | 23 | 1.1E-97 | ||
| ProSitePatterns | 183 | 193 | 11 | - | ||
| PRINTS | 255 | 274 | 20 | 1.1E-97 | ||
| PRINTS | 291 | 307 | 17 | 1.1E-97 | ||
| PRINTS | 308 | 319 | 12 | 1.1E-97 | ||
| PRINTS | 326 | 349 | 24 | 1.1E-97 | ||
| PRINTS | 329 | 339 | 11 | 2.7E-41 | ||
| PRINTS | 363 | 385 | 23 | 1.1E-97 | ||
| PRINTS | 371 | 380 | 10 | 2.7E-41 | ||
| PRINTS | 385 | 394 | 10 | 2.7E-41 | ||
| PRINTS | 400 | 416 | 17 | 2.7E-41 | ||
| PRINTS | 418 | 432 | 15 | 2.7E-41 | ||
| PRINTS | 433 | 447 | 15 | 2.7E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi3g1v0462300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…