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LotjaGi3g1v0462400.1

Overview

Field Value
Gene ID LotjaGi3g1v0462400
Transcript ID LotjaGi3g1v0462400.1
Lotus japonicus genome version Gifu v1.2
Description Formin-like protein; TAIR: AT4G15200.1 formin 3; Swiss-Prot: sp|O23373|FH3_ARATH Formin-like protein 3; TrEMBL-Plants: tr|A0A1J7HPP8|A0A1J7HPP8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:87742916..87749453) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAAAGACATGAATGACATCACGGGTGTCCCACATAGTTCTCCCCACGCCCCTTTTTTGACTTCAACGCATCGTTGTC TTTCTCTCTCCTCTGACGCCTCCTCCTCCCACCACCCAGCGAGCACAACCAACAACAACAACACCAAGAAACTTTCGAAT GATCATCATCTACAACAACATAATTCTTGCTAATTCTTAACATTTGATTGTTTCTTCCCTTCAACATTGCATTATATTCA ATTCTCTCCTATTACATTCTCACATTTCCAGCCTCATTCTTGGGTTTTCAACCTTTGAGAAAAAGTTGCAAGAGTTTGGA TATTTCTACAAGCTCATTCTGTTTCTGGGGTTGGATAAAAATATAGCAAGAGAGAAGGAACTTTGAAAGTTCAATGAGAT ATGAGATGGGAATTTTGCGTTTGGGTTGGTGAATTTGATAGCAATGGAATTGACAAGACCCGGTTATGCGGTTATTTATG TCATCCTCCTTTGCGCGTTGGCTCAAGGGGGCTCAGAGGGGAAGAAGGGGAAGGACGAGGATTTTTCTAGCTGTGCTGGT GGAGGACCATCTTTCTCATCTTCCTTTCATGTTCATGGAAAACAGGTAGTTTCAGCATTTCTCTGTTTTTGTTGGAATTT CTGAGCTGGTTTTTATGTTGTTTCATCATTCATGATCATGCTAATGATGTGTTTGCCAAAATTGCTCATGATATTCTCTT GTTTGGTTGATATAGGTAGAAAATGTGGGGAAACATTGCAGGAAAGAATTGGTAGAAAAGAGTAATGATGATGTTAAGGA TTTTGACTTGCATTTACTGGAAAGAGGCAGTGACTTGAGGTGTATTCATTTACTAGAAAATGAAATTCCTAAGACAACAA AGTCTCTGTCTCCTGTTATGAGAAAAAAGGTTTTAGATTGCATTAGAAGGAGCACTCCTCCTGCTCCTCCTGTTTCTCAA AAGAAAACTGGCTCTAGATATTTGTTAACAAAACATTCTAGATCAACTTTGGGTTTGGAAAGTGGTCATCATGGAAGAAA CTTGATTTCTGATCCTCCACATAATGAGTTATCACCAAGTCCAGCTGGTACAGTTCCATCCCCAGGGCCAGCATTGGAAT CACCAACACCAAATCATGGTCCAACACCAGCAAATTCTCCATCATCACCAACTCCAACACCAGAAAATTCTTCACCATCA TCAACTCCAAGTCCCACTGCAATGGTGCCGCCAACATCACCACCGCGCCAACATCCTCCTCCTTCTCCTGAAAAATTACA ACATGTAACATATGCTCCTGATCCTTCACCTCCTGACAAAGGTGATAGAAAGCAGAAAGCAATTATTTTAGCTGTCACTG TATCAGGAATTATTATCATGATTGGCCTGGCTCTATGCTATCGCGAGTCCAGAAGAAGCGACAGAGCTGACAAAGATGAA GGGCCTTTACTCATATTAACTTCAAGTGATTACTCTGGAGGTATGCTCATGTAATGCTTTTTATGTTAGCCTAGTATATA ATATATGACTATGAGTGTGAAACATTCATAACATGTTTAGATTAGCTTCTTTTTGCTCAGAATCAATTATAGCACCCACA AGCTTCTTTACAGAATTGATTTTGGTTTAGAAGGATTTCCTAACATGCATTAATCTGGTCCTTGAATTTATGATTTCATG TTTTTCCCCACTTCAGGCAAACAGAAGGTTGTCCGTTTGGGAAATGCTAATAATGAAGGATCTGGTATTAGCAATGGAAA GAAGCCTTCTAATGTTAGAAATTGGTCTATGAAGGCTGGAGATAACAACACCTCAGTGGTTGAGGCAACATCATCAGAAG GTGTGGGACAAGTACCGGAACCTCCTAATGGAAAACCACCCCCTCCACCCCCTGGCCCGCCTCCACCACCGCCACCACGG AAACCACCTGCTCCTGCTCCTCGTCCACCACCACCTCCTAGAGCTGGTCAGCCTCCTCCTGCTCCTCCCAAGCCAGTGAA AGTTGGAAACCAAGGAGCTAATCAGGGAGGTACTAGTGATGGTGATGCTCCAAAACCAAAACTAAAACCATTCTTTTGGG ATAAGGTTGCTGCAAAACCTGATCAACAAATGGTGTGGCATGAGATCAGTGCAGGGTCATTCGTGTATGAACACTAACTC CTGTCGGAGATCAAAATTTCCTCGATTAATCAATGAAAAATATACCAATAATATTGGACTAATGTTTTGTAACTATACTT CTCAGGTTCAATGAGGAAAAGATGGAGTCTTTATTTGGCTGTGCCAACCAGAACAGAAATGAACGCAAAAAAGATTCACC ATCTGTTGATACATCAGTGCAGTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGAGCTC TGAATGTGACAACAGATGAAGTTATAGATGCTCTTAGAGAAGGTAACTCTGTCTTTCACTTTTCCTTTACATGTTCTCAT GACATTATTTGATGAATGTTAGGAATCACATCACATGCAGAGTTTAGATTAATAAGGGAGGGTGTTCCCCTCGATTCTGA TTTACTTTATTGATTTTAGCATTAGAAACAATTCAAAAGCATCTTTTTATTTTATTTTAGCATTTCCCAAAGAATAGATT TGCATTTTGAAGCACGGACAAGTTACAATATGTTTCTTGAATCAGGTAATGAGATTCCTGTCGAGCTCATCCAGACGCTG TTGAAGATGGCACCAACAACAGAAGAGGAACTGAAGCTCAGGTTATTCACGGGAGAGTTGTCTCAATTAGGCCCAGCAGA GAGGTTCCTCAAAGTCTTGGTGGACATTCCATTCGCTTTCAAACGTCTTGAAACTCTGCTGTTCATGTTTATCCTTAGAG AAGAGGCCTCAAGCATTAAGGAGTCATTTGCAACATTAGAGGTGAGATTAAGTGAATTTCAATGTTTATTTCATTAGTCA AACACTAAAATTAACTAGATTTATATGGTACGCCATTAAACTTCACTTATGTTAAGAATGGTATTATAACCTTGTTTGGA CCATGTAGTAACTGACCTCACAGAAAATGCTCTTTAGTACCAAGAAGTTTTCACACATATTGTATGCATGAATATGATTG TTTGAGAGAATGAAAATCGAGTGTAGTTATTTTTGAAAACATCTTTTATAAAGATCCAACTATGTATTGTTATGCATTCC CACTAATTGAATTCACTTTAAAGACTTTGGTTAATGTAGTTAAGTATAAATCAAGGTTTAAATCGCAGTTGCATCATCCT TGATATTGCATAAAATTGTAACAAATGAGGTTGATAGGAGTACAGTTGTGGTCGCATGCGATCGCAGAGACCTCCAAAAT AATGATATTGTGGCTGGTTGGCTGCAAACGCGGTTGTGGACCTTGACTTAAAACTACCCTACAAGTTCAGCAAGTATGAT CCCGTTTGGATGCGGACCAAAGATAATCTCCAATAAGTGTTTAGTCTGTATGTAAACGGACTCCATATATAAGTTGCATG CATTTATGAGAGGAAAATATTACTTAGATATTTGTTCAATTGTCTACATATCATTGTTGTTTATGAGATTTGTTTAACAA ATTAAAGTGCTACATCATGGTTGTTTAATTTGTTGCATCTGAATGGCAGGTTGCTAGCGACAAGCTTAGAAAAAGCAGGC TATTCTTAAAATTGCTAGAAGCAGTTCTCAAAACCGGTAACCGCATGAATGATGGCACCTACCGCGGTGGCGCTCAAGCA TTCAGGCTGGACACTCTCCTCAAACTCTCAGACGTGAAAGGAACCGACGGAAAGACAACACTGTTACACTTCGTGGTTCA GGAGATCATCCGTTCAGAGGGCATAAGAGCCGTGAGAACCGAGAGAGAAAGCAGAAGTGTTGTTTCCAGCGTGGGAACAG ACCAAGACGTCGACGAAAGCCCCGAAGCATCTGAAGAACACTACCGCAGCCTTGGTCTTCAGGTAGTTTCCAGTCTGAGC AACGAACTTGAAGATGTCAAAAGAGCAGCGCTCATAGACGGTGACGCGCTGAGCAGTGCAGTCTCAAAACTCGGACACTC GCTGGCAAAGACGCAGGAGTTTATGAACACTGATCTTAAGAGTTTGGATGAAGAGAGCGAGTTCCAGCGCTGCACAGAGA GGTTCGTGGAGAAGGCGAGGGAGGAGGTGACATGGCTGCAGGAGGAAGAGAAGAGGATCATTGCGCAGGTGAAGAGCACT GCAGATTACTTCCACGGGAATGCAGGGAGGGATGAAGGGTTGCGCTTGTTCTTGATAGTGCGTGATTTCTTGATCATATT GGACAAGGTGTGCAAGGAGGTGAGGGATAAGACTCTGAGGGCGGTGAAGTCTTCTCAGAGGAAAGAGGCTCTTTCCGTGC CGTCTTCTCCTGACACTCGTCATCAGCAGTCGCCGCCGGCACCTTCTGATCTGCATAGGCGGCTATTTCCGGCGATTGCG GGGCGGAGAATAGTTGAGGACTCTAGCTCTGATGATGATGATGATGATCACAAGGAGGGCTCTTCTACATAGCTTTGCTA TCTAGTTATGTAAGTGATTTTTACAAGAAATTAACTGCATGTTTGAAAATGCTTTGTGATTGATTCTAAAGCTAAAATCA TATTGGATGAGAATTTATGATAAAATTTCTTTTAATGTTATCTTGAGCATTTTATTCAGTTATGCCTATAAATATTATGC TCTTGTAATTCTTGATTGCTCAAAGAGATCAAAACTTGGTATGAAGTTATTTGATTGTTATCTTCAATTTTTGATTGGTT GTTTTAGTAGACACGCACTTATGCAAGGATTATTGGAGAGGATGTTGTTATGCTTCATGAACTGGCACATGTGGCTGCTA GCAGAGTCAAGGAAACAGAAGCCTCGCTTGACACTGAAATTTTGTGTGTGCAGTTTAAATTGCCTCTGATTTCTGAAGGG AGGTGTAAATGTATATTATTACGGCCATTCCGGGTGAGTCCTGGCCAATGTTAGTTATCTGATGTCATAGTGTGGAGTTC TTCATCAAACCCTTGAGTTTCTTAATCTTCAACACAATATTACAAGAACTTATGAAGAAAGGTGTAACAGAATATGTGTA TTTCTTGTTTGTTTTTGCCCCAACTGATTTGAATGATGATGTTTTGTGTTGGGTTGATGTCTTCAAATGTGAAGAGAAAT GAGAAAGTGTGATAGTGTCTAGTTGAGGAGGCTCACCAAGGTTGCTTTTTTTATGAGTGATATGCAAACAACAAATTACA TGTCACTGAAAAAAATCAACAGGCCACGTATATTCTTGCGTTTAGTCTTCCTATAGTTTAGGGTTTTCTGATGTCAAACT GTCAATGAATGTAGTTTGGAAACAGATAGGTTGAAAAAAGCATTCAGATTGATTGTTGTAGCACCTATTCATTTCCATTT GTTATTTTCTCAAAGTCCAAAACAAAGAGTGGCCAGTGAGACATTTCTGTTTCCCCATCATCTAAATATAAATATAGTTG CTCCAAATGAGTGTTTAGTTTTTAAGGAACAAGCTGATAGTTCTAGGCCATCAAATGTAATTCAATTGGCAAATGGCATT TCCTGCCATTACTTCTTGTTGTTTGATATTAGTTGAATATAATATGAGAATTTTCATCCTAAGTTTTAAGAAGAGTTAGT CAAATTATAAGTGAGGACTAGTCCTGCTCCTAAAGAATTTTCCGAACACCTTGTGGAGGTGAATCCTAGGTTAATGTTAG GTGGTTCTTAATTTAGTGGAAGTGAATTTGTTTATGGCTTAAAAGGATTGTTCACAAGTTCACCCTCCTAAATCTAGCAC TGCAGTGAAAGAAAAGCATAAGAACAAACAGCTTTTTCCCAAAAATAAATTTCACCTACAACAATAGTTGTAGCCATTGG ATTAAAAACTTAGTTAAGATTAAGAATGTAAGATAAATAAAATAAACGATAAAAAGATCTATAATTTTCCTATCAAGTAA AAAGAAAGATCTATATGCATACTTAAACAACTAAAACTCTGTTAATTAATGATCCATGATACAAGTCACTGGAGAGAGTA GTTTAATCATCCAAAAACAAGGTTCCATGTCTCCCCTTTTAAGTACAAGAAGCATGAAAGTCTCAGACACATTTTGTAAA GCAACATTTAGAAAAGCCAAATTCCAAAAGCACTACAGTAGGAATGATGTTAAAGATCATTATCTAACTCACTAATCCAT GGAGGAAGTGGCAGAAACGTAATATGCAACACAGAATAGGCCATGAACAAAACATGAAATCCCACCAATGGACAGGAAGT GATGGTGTGATAAACCACAGGAACCGTCTGATCTGTTGTTTGACAAAGCCCCTATCACTAGCATGGACAATCCAACGGCC AACAGGACCCTGATCAACAACACAATCAAAATGAGTAAAGTAAAAAAAAATGATTCTACGATTGATACTGTTGATTCTGT AGCCAAAGTCAATTCCAAGGAGAAGATTTTGCAAGTGCATGTTTGGATATCGTGATTT 

CDS sequence (LotjaGi3g1v0462400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTGACAAGACCCGGTTATGCGGTTATTTATGTCATCCTCCTTTGCGCGTTGGCTCAAGGGGGCTCAGAGGGGAA GAAGGGGAAGGACGAGGATTTTTCTAGCTGTGCTGGTGGAGGACCATCTTTCTCATCTTCCTTTCATGTTCATGGAAAAC AGGTAGAAAATGTGGGGAAACATTGCAGGAAAGAATTGGTAGAAAAGAGTAATGATGATGTTAAGGATTTTGACTTGCAT TTACTGGAAAGAGGCAGTGACTTGAGGTGTATTCATTTACTAGAAAATGAAATTCCTAAGACAACAAAGTCTCTGTCTCC TGTTATGAGAAAAAAGGTTTTAGATTGCATTAGAAGGAGCACTCCTCCTGCTCCTCCTGTTTCTCAAAAGAAAACTGGCT CTAGATATTTGTTAACAAAACATTCTAGATCAACTTTGGGTTTGGAAAGTGGTCATCATGGAAGAAACTTGATTTCTGAT CCTCCACATAATGAGTTATCACCAAGTCCAGCTGGTACAGTTCCATCCCCAGGGCCAGCATTGGAATCACCAACACCAAA TCATGGTCCAACACCAGCAAATTCTCCATCATCACCAACTCCAACACCAGAAAATTCTTCACCATCATCAACTCCAAGTC CCACTGCAATGGTGCCGCCAACATCACCACCGCGCCAACATCCTCCTCCTTCTCCTGAAAAATTACAACATGTAACATAT GCTCCTGATCCTTCACCTCCTGACAAAGGTGATAGAAAGCAGAAAGCAATTATTTTAGCTGTCACTGTATCAGGAATTAT TATCATGATTGGCCTGGCTCTATGCTATCGCGAGTCCAGAAGAAGCGACAGAGCTGACAAAGATGAAGGGCCTTTACTCA TATTAACTTCAAGTGATTACTCTGGAGGCAAACAGAAGGTTGTCCGTTTGGGAAATGCTAATAATGAAGGATCTGGTATT AGCAATGGAAAGAAGCCTTCTAATGTTAGAAATTGGTCTATGAAGGCTGGAGATAACAACACCTCAGTGGTTGAGGCAAC ATCATCAGAAGGTGTGGGACAAGTACCGGAACCTCCTAATGGAAAACCACCCCCTCCACCCCCTGGCCCGCCTCCACCAC CGCCACCACGGAAACCACCTGCTCCTGCTCCTCGTCCACCACCACCTCCTAGAGCTGGTCAGCCTCCTCCTGCTCCTCCC AAGCCAGTGAAAGTTGGAAACCAAGGAGCTAATCAGGGAGGTACTAGTGATGGTGATGCTCCAAAACCAAAACTAAAACC ATTCTTTTGGGATAAGGTTGCTGCAAAACCTGATCAACAAATGGTGTGGCATGAGATCAGTGCAGGGTCATTCGTGTTCA ATGAGGAAAAGATGGAGTCTTTATTTGGCTGTGCCAACCAGAACAGAAATGAACGCAAAAAAGATTCACCATCTGTTGAT ACATCAGTGCAGTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGAGCTCTGAATGTGAC AACAGATGAAGTTATAGATGCTCTTAGAGAAGGTAATGAGATTCCTGTCGAGCTCATCCAGACGCTGTTGAAGATGGCAC CAACAACAGAAGAGGAACTGAAGCTCAGGTTATTCACGGGAGAGTTGTCTCAATTAGGCCCAGCAGAGAGGTTCCTCAAA GTCTTGGTGGACATTCCATTCGCTTTCAAACGTCTTGAAACTCTGCTGTTCATGTTTATCCTTAGAGAAGAGGCCTCAAG CATTAAGGAGTCATTTGCAACATTAGAGGTTGCTAGCGACAAGCTTAGAAAAAGCAGGCTATTCTTAAAATTGCTAGAAG CAGTTCTCAAAACCGGTAACCGCATGAATGATGGCACCTACCGCGGTGGCGCTCAAGCATTCAGGCTGGACACTCTCCTC AAACTCTCAGACGTGAAAGGAACCGACGGAAAGACAACACTGTTACACTTCGTGGTTCAGGAGATCATCCGTTCAGAGGG CATAAGAGCCGTGAGAACCGAGAGAGAAAGCAGAAGTGTTGTTTCCAGCGTGGGAACAGACCAAGACGTCGACGAAAGCC CCGAAGCATCTGAAGAACACTACCGCAGCCTTGGTCTTCAGGTAGTTTCCAGTCTGAGCAACGAACTTGAAGATGTCAAA AGAGCAGCGCTCATAGACGGTGACGCGCTGAGCAGTGCAGTCTCAAAACTCGGACACTCGCTGGCAAAGACGCAGGAGTT TATGAACACTGATCTTAAGAGTTTGGATGAAGAGAGCGAGTTCCAGCGCTGCACAGAGAGGTTCGTGGAGAAGGCGAGGG AGGAGGTGACATGGCTGCAGGAGGAAGAGAAGAGGATCATTGCGCAGGTGAAGAGCACTGCAGATTACTTCCACGGGAAT GCAGGGAGGGATGAAGGGTTGCGCTTGTTCTTGATAGTGCGTGATTTCTTGATCATATTGGACAAGGTGTGCAAGGAGGT GAGGGATAAGACTCTGAGGGCGGTGAAGTCTTCTCAGAGGAAAGAGGCTCTTTCCGTGCCGTCTTCTCCTGACACTCGTC ATCAGCAGTCGCCGCCGGCACCTTCTGATCTGCATAGGCGGCTATTTCCGGCGATTGCGGGGCGGAGAATAGTTGAGGAC TCTAGCTCTGATGATGATGATGATGATCACAAGGAGGGCTCTTCTACATAG 

Protein sequence (LotjaGi3g1v0462400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELTRPGYAVIYVILLCALAQGGSEGKKGKDEDFSSCAGGGPSFSSSFHVHGKQVENVGKHCRKELVEKSNDDVKDFDLH LLERGSDLRCIHLLENEIPKTTKSLSPVMRKKVLDCIRRSTPPAPPVSQKKTGSRYLLTKHSRSTLGLESGHHGRNLISD PPHNELSPSPAGTVPSPGPALESPTPNHGPTPANSPSSPTPTPENSSPSSTPSPTAMVPPTSPPRQHPPPSPEKLQHVTY APDPSPPDKGDRKQKAIILAVTVSGIIIMIGLALCYRESRRSDRADKDEGPLLILTSSDYSGGKQKVVRLGNANNEGSGI SNGKKPSNVRNWSMKAGDNNTSVVEATSSEGVGQVPEPPNGKPPPPPPGPPPPPPPRKPPAPAPRPPPPPRAGQPPPAPP KPVKVGNQGANQGGTSDGDAPKPKLKPFFWDKVAAKPDQQMVWHEISAGSFVFNEEKMESLFGCANQNRNERKKDSPSVD TSVQYIQIIDPKKAQNLSILLRALNVTTDEVIDALREGNEIPVELIQTLLKMAPTTEEELKLRLFTGELSQLGPAERFLK VLVDIPFAFKRLETLLFMFILREEASSIKESFATLEVASDKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLL KLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERESRSVVSSVGTDQDVDESPEASEEHYRSLGLQVVSSLSNELEDVK RAALIDGDALSSAVSKLGHSLAKTQEFMNTDLKSLDEESEFQRCTERFVEKAREEVTWLQEEEKRIIAQVKSTADYFHGN AGRDEGLRLFLIVRDFLIILDKVCKEVRDKTLRAVKSSQRKEALSVPSSPDTRHQQSPPAPSDLHRRLFPAIAGRRIVED SSSDDDDDDHKEGSST 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 6 6 -
Phobius 1 22 22 -
SignalP_EUK 1 26 26 -
PANTHER 3 888 886 0.0
PANTHER 3 888 886 0.0
Phobius 7 17 11 -
Phobius 18 22 5 -
Phobius 23 255 233 -
MobiDBLite 145 253 109 -
PRINTS 160 172 13 1.0E-16
MobiDBLite 172 231 60 -
PRINTS 176 192 17 1.0E-16
PRINTS 196 208 13 1.0E-16
PRINTS 208 229 22 1.0E-16
PRINTS 231 247 17 1.0E-16
Phobius 256 276 21 -
TMHMM 257 276 20 -
Phobius 277 896 620 -
MobiDBLite 311 425 115 -
MobiDBLite 311 349 39 -
PRINTS 354 379 26 1.0E-16
MobiDBLite 357 403 47 -
ProSiteProfiles 415 846 432 51.358
SMART 415 835 421 1.6E-97
Gene3D 415 683 269 6.2E-69
Pfam 419 820 402 1.1E-105
SUPERFAMILY 484 843 360 3.53E-84
Gene3D 706 846 141 2.5E-15
MobiDBLite 838 896 59 -
MobiDBLite 841 859 19 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0462400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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