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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0464900 |
| Transcript ID | LotjaGi3g1v0464900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox leucine zipper protein; TAIR: AT4G04890.1 protodermal factor 2; Swiss-Prot: sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2; TrEMBL-Plants: tr|A0A0S3SC10|A0A0S3SC10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0464900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88024314..88029678) extracted from Lotus japonicus Gifu genome v1.2.
ACAACTTCTCTTCTATCACTCTTCCTTATACACTAATTCCAAAAGAAAGAAAGTTCATGTAGTATCTGGTATGTAATTTG ATTCAACATTTCCTCACACAAGGCACAACACCTTTTCATAAAATTAAAATTAAAATTTTATTTATAGTATTTTACATTTT CAACTTGCCCTTTCATTTTTTCTTTCTTTTTTACTCTGGATGTGGACATAACATTAGTGGTTGCTGTCTTTATGTTTTTT TTTTGTTAGATTGAGAAACAATAAAGACTAGTCTGGAATCTTAAAAGATCGGTAGATGATGTTCCAGCCAAACCTCATGG AAGCTGGTCAGTTTCACCCTTTAGATATGGCTCCCAACACCTCAGAGAGCGACATCCCTCGGCTCCGGGAAGATGAGTTT GACAGCGCCACCAAGTCCGGCAGTGAAAACCATGAAGGCGCATCGGGCGAAGACCAAGAGCCACGTGCCAAGAAGAAGCG TTACCATCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCGTAAGAAGCTAAACAAAACAAAGCCACCTTCATGAAAT TGATTTTTTTTGTCCTTTTTGAAATGATGAAAAATTGATTTTGTTTGTTGTTGAAGTTTTTTCAAGGAGTGTCCTCACCC AGATGACAAGCAAAGGAAGGAGCTAAGCCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAAAACAAGC GCACTCAGATGAAGACCCAACATGAACGCCATGAGAACACGTCGCTGAGGACTGAAAATGAGAAGCTTCGAGCAGATAAC ATGAGGTATAGGGAAGCTCTTAGCAATGCATCTTGTCCTAATTGTGGCGGACCAACCGCTATTGGAGAAATGTCATTTGA TGAACATCACTTGAGGATTGAGAATGCACGTCTTAGAGAAGAGGTACATCTTTTGTTTTTTTTTTCTTCCCTTTTTTCAT GTTTTTCCCTTTATGATGAGATTTAAAAGCACCACCATTTCAAACTTTTGCTACCAACATTCATCTATAGTCAAGCTAGA TTCATGGGGACACAACTTCAACTCTCAGGATTGTCATTTATTTTGGATGGGCTAACACATTATCTGGACGGATTTACACG CGTTAAAGAGCAAAATTATTTTTTAATCTTTTGCTCATTTTGCATAAAAAGACATTACAAAATCACATATAGTATACTTT AAGTGTGTATTAAACTACATTTATGGAGTTGAATTTTTAGCTTGTCAAGGAAATTGCCTATTCATTTTGAGTCGTCTGAT CAAAATCAAATTGCTAACATTTTAGGTTACATTTGCAAATTACTTATCACCCCTTAAAATGTGAATCATGGGCTAGATTA CCTTGCATAAAATTGTCATTTCTCACTGTTTTTGTTTTTTTTTTTCAGATTGAAAGGATTTCATCAATTGCTGCAAAGTA CGTGGGCAAGCCAGTGGTGAACTATTCCCATCTCTCATCTCCTCTCCCTCCTCGTCCGTTAGAACTCGGCGTTGGTGGCG GTTTCGGAAGCCAGCCAGGAATCGGTGTGGACATGTATGGAGGTGGAGATATACTGCGGTCAATCACCGGGCCCACCGAA GCGGATAAGCCAATCATAATAGAGCTAGCTGTTGCGGCCATGGAGGAACTCATAGGGATGGCGCAAATGGGTGATCCTCT CTGGTTATCTACACTCGATGGATCTGATGCTGTGCTGAACGAGGATGAATACATCAGATCATTTCCAAGAGGGATTGGAC CGAAACCTTCTGGTCTCAAATGTGAAGCTTCTCGTGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAAATT CTCATGGATGTGGTATGTTAGATCTATATTATATTTTCTTCATGATTCTTAGGGCTTTTGTTTATGGATTTTGACTTTTG ATTGTTTTTTAATTTTTCAGAACCAATGGTCTACGGTTTTCTCTGCTATAGTCTCAAGAGCAATGACTGTTGAAGTGTTG TCAACTGGGGTGGCCGGGAACTACAATGGCGCTTTACAAGTGGTAAATGATCATCTATATATATTTTTATGGGTATTTTA AATTGCGGTTGCGGTTATGTTTTAGAAAATTGCGCGCAAATGCCGGTTGATGTAATTGGAATTTTGGCGCGAATATTATT GTGGGGACTCCAAAGTCTTTATGTTGCTTCTATAATTACGATTGCGGAATGCAATGTAAAACCCTAATTTTGTAGAGGAT TAATCATTTTATATTTACATTAGTTTAAGTGCATATGTATTTACAAGGGTTTTTAATTGCGGCTGTTGTTATGTTAAGAA ATAGCGAACAAATGTGGAATGGTGCGGTTGTAGTTACGGTTGTGATGTTGTAGTGGGAACTCCAACATCCTTAATGTTGC AGTTGCAATTACGATTGCGGACGAGAATTTAAAACCTTAATTATCTAGTAGATCAATTTTTTATGTGTGCTCCACTGAGT GTTAATGAGATTATATTATAACATAGAAATACAAAATTAATGGTTTGATATTTTTTTGCAGATGACAGCTGAGTTGCATG TACCTTCGCCTCTTGTGCCAACTCGTGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGGAGATGGGACTTGGGCAGTT GTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCAACCAGATCTAGAAGAAGGTCTTCTGGTTGCTTAATTCAAGA AATGCCAAATGGCTACTCAAAGGTAGTCATAAGTTAGAGTGTTCGGTTTATTTTTACTTCATTATTTTTGTGTTTTCAAT GTTTGCTCAATTTATTGTTAACCTTTAATCTTCGCATGCCTAGGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAG GTGTTCACAATCTTTACAAGCAGCTTGTTGGGTCTGGACAGGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGA CAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGGTATGAATGAAAACATGTTTTT AATATAATTTTTTATTCTACATTTGAAGTATTTTGATGAGGACATTAGATGCTCAGTCCACCGACCTAATCAAACCGATT TAACCCGAAGTTAAAAGATTGGGTTGAATCTGATCATGATTTGGTTTGGGCGAAAAACAAGTAAACCTGATCGGCCTTAA TTAGTTCTACTACCAGATCAAGAAGAATATAAATTACACATTTAATAGTTTCAAAAATAAAAATATCAAACTGATAGCCC GATTGAATATTTGACTAGGTTGATTTGGTTCGAGTTATTCGTCTTATCATGTAGAACTTCGACCAATTCAAACTGAATGT TTTCACTTGATCAGAGTTCATTTCATCTTAAATCTGACCCAACCCGATTTTCATCCCATATATGTATAAATCCGTCCCAA CCTAATCTTTACCCGTAAATGTAAAAGGCATTTTCAGATGACAAAATGAATTAACTTATAATTGTGAATTAATATTATGT AGTGATAACAAGCCAAGAAGGGAGGAAGAGCATGATGAAACTTGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGA GCGCTTCCACTGCTCATTCATGGACCACAATCTCTGGGACCGGTGCTGATGATGTCAGGGTCACGACCCGGAAGAGTGTG GATGACCCAGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCTACCTCTTTTTGGCTTCCTGTTCCACCTAAACGAGTTTT TGACTTCCTCCGTGATGAGAACAAAAGAAACGAGGTACGTATGATCCAAAACAAGTAAACGTTTTAGGCTGCATTATTGT GGCTTCATGGGTCTATTATTATACAACATTGATATATATGGTAATGCTTCTTACATGGTGTAATTGGATTTGTTTGAGTG CATGTTTGTTTTGATACTCAGTCAAAAATCATAATGAAATAAAATCAGAATATATAGAAACAACTGCTTTTATTTTTTGT GTTTGTTTATCATTATTTCAAATTTATTCTATTGTTTGCACTCAACATTGATATATATGGTAATGCTTCTTACATGGTGT AATTGGATTTGTTTGAGTGCATGTTTGTTTTGATACTCAGTCAAAAATCATAATGAAATAAAATCAGAATATATAGAAAC AACTGCTTTTATTTTTTGTGTTTGTTTATCATTATTTCAAATTTATTCTATTGTTTGCACTAAATTTATCATACTCCTTC CGTTCCCTTTCCCATTCTCTGTCTTTGAACATTCCCATCTCGGTCTTTGAACTTCTTACATGTTTAGATTTTCACCCAAT TATCTTCTATATGTGAAATGGTTTGGATTACATATCTTTTTCAATTTGCCAAAGATAGTCTGATTGTTAGGTTAATACGC CATGCTAATGGTAGATAGCTGCTGACACAGACGCCTCATCATTTTATATTTACATAGTTATCATTACCTAATTATTGATG GTCTCTATTTACTTTTTGTACACATATGTTCAAACTCACTCGATTGATGTGAAGTGATGTAATATGAGTAAAATGTGTCC CCAACATGATTACATAAGCAAAGAAACTTAGGGTTTGTTTCAATTCTTTCTTATTTTTTGTGTAAATAGTTTTTATAAGA TAAGAAAAATATATTTTAACTAGATATTATATAGAATTGAAAGATCTATATATAACTTGGAAATTAAAAACATAAACAGA ATAAAGCAAGCATATATGGTCTTGTGATTTAGTACCTCCCCTTTGGATTTTATATTTGTCATGTCCTTTTAAGTTTTTTT AACTCTTTGAATAACAGTGGGATATCCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAATGGCCGAGAT ACTGGGAATTGTGTCTCTCTACTTAGAGTAAATGTATACTTTGTTACCTTACATTTAATTTAATATTTGAATATTATATT TTTTTACTCAAATTAAGTGAATTGTGTCTGAATTAATTTATAATTAACCTTGTAGAGTGCAAATTCAAGCCAGAGCAACA TGTTGATACTCCAAGAGAGTTGCACTGATTCAACGGGCTCTTTCGTTATTTACGCGCCTGTTGACATTGTTGCTATGAAT GTGGTTCTTAATGGAGGAGACCCAGATTATGTAGCACTTCTTCCTTCAGGGTTTGCTATTCTTCCAGATGGAAGTGGCAT TGGTGAAACTGGTCCTGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCAATTCCAACGGCTAAGCTTT CTCTGGGATCTGTTGCTACTGTTAATAACCTCATTGCCTGCACTGTTGAACGAATTAAGGCTTCTTTAATTGGTGAAGGT CTTGA
CDS sequence (LotjaGi3g1v0464900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTCCAGCCAAACCTCATGGAAGCTGGTCAGTTTCACCCTTTAGATATGGCTCCCAACACCTCAGAGAGCGACAT CCCTCGGCTCCGGGAAGATGAGTTTGACAGCGCCACCAAGTCCGGCAGTGAAAACCATGAAGGCGCATCGGGCGAAGACC AAGAGCCACGTGCCAAGAAGAAGCGTTACCATCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTTTTCAAGGAG TGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTAAGCCGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTT TCAAAACAAGCGCACTCAGATGAAGACCCAACATGAACGCCATGAGAACACGTCGCTGAGGACTGAAAATGAGAAGCTTC GAGCAGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCATCTTGTCCTAATTGTGGCGGACCAACCGCTATTGGAGAA ATGTCATTTGATGAACATCACTTGAGGATTGAGAATGCACGTCTTAGAGAAGAGATTGAAAGGATTTCATCAATTGCTGC AAAGTACGTGGGCAAGCCAGTGGTGAACTATTCCCATCTCTCATCTCCTCTCCCTCCTCGTCCGTTAGAACTCGGCGTTG GTGGCGGTTTCGGAAGCCAGCCAGGAATCGGTGTGGACATGTATGGAGGTGGAGATATACTGCGGTCAATCACCGGGCCC ACCGAAGCGGATAAGCCAATCATAATAGAGCTAGCTGTTGCGGCCATGGAGGAACTCATAGGGATGGCGCAAATGGGTGA TCCTCTCTGGTTATCTACACTCGATGGATCTGATGCTGTGCTGAACGAGGATGAATACATCAGATCATTTCCAAGAGGGA TTGGACCGAAACCTTCTGGTCTCAAATGTGAAGCTTCTCGTGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTT GAAATTCTCATGGATGTGAACCAATGGTCTACGGTTTTCTCTGCTATAGTCTCAAGAGCAATGACTGTTGAAGTGTTGTC AACTGGGGTGGCCGGGAACTACAATGGCGCTTTACAAGTGATGACAGCTGAGTTGCATGTACCTTCGCCTCTTGTGCCAA CTCGTGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGGAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAAT TTGCGCCCTAGTCCTTCAACCAGATCTAGAAGAAGGTCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTACTCAAA GGTGACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTGGGTCTGGACAGG CATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCC ACAGTAGATCCAAGAAGGGAGGAAGAGCATGATGAAACTTGCTGA
Protein sequence (LotjaGi3g1v0464900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFQPNLMEAGQFHPLDMAPNTSESDIPRLREDEFDSATKSGSENHEGASGEDQEPRAKKKRYHRHTQHQIQEMEAFFKE CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTSLRTENEKLRADNMRYREALSNASCPNCGGPTAIGE MSFDEHHLRIENARLREEIERISSIAAKYVGKPVVNYSHLSSPLPPRPLELGVGGGFGSQPGIGVDMYGGGDILRSITGP TEADKPIIIELAVAAMEELIGMAQMGDPLWLSTLDGSDAVLNEDEYIRSFPRGIGPKPSGLKCEASRETAVVIMNHVSLV EILMDVNQWSTVFSAIVSRAMTVEVLSTGVAGNYNGALQVMTAELHVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDN LRPSPSTRSRRRSSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVGSGQAFGAKRWVATLDRQCERLASAMATNIP TVDPRREEEHDETC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 69 | 69 | - | – | |
| PANTHER | 15 | 485 | 471 | 6.7E-281 | ||
| PANTHER | 15 | 485 | 471 | 6.7E-281 | – | |
| MobiDBLite | 26 | 59 | 34 | - | – | |
| Gene3D | 34 | 116 | 83 | 9.8E-20 | – | |
| SUPERFAMILY | 47 | 117 | 71 | 1.17E-19 | ||
| ProSiteProfiles | 57 | 117 | 61 | 16.989 | ||
| SMART | 58 | 121 | 64 | 1.1E-19 | ||
| CDD | 60 | 118 | 59 | 4.17255E-20 | ||
| Pfam | 60 | 115 | 56 | 3.6E-18 | ||
| ProSitePatterns | 92 | 115 | 24 | - | ||
| Coils | 123 | 143 | 21 | - | – | |
| ProSiteProfiles | 241 | 473 | 233 | 43.201 | ||
| SUPERFAMILY | 241 | 472 | 232 | 1.17E-34 | – | |
| CDD | 245 | 469 | 225 | 2.07843E-124 | – | |
| SMART | 250 | 470 | 221 | 2.7E-61 | ||
| Pfam | 251 | 470 | 220 | 2.3E-56 | ||
| Gene3D | 314 | 477 | 164 | 8.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0464900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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