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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0465600 |
| Transcript ID | LotjaGi3g1v0465600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate receptor; TAIR: AT1G05200.5 glutamate receptor 3.4; Swiss-Prot: sp|Q8GXJ4|GLR34_ARATH Glutamate receptor 3.4; TrEMBL-Plants: tr|A0A0L9V5X5|A0A0L9V5X5_PHAAN Glutamate receptor; Found in the gene: LotjaGi3g1v0465600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88095164..88100431) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTTCACATGTATGGGTATTTAGAAGAAACAAAAGTATGGATATGCCAAAAATTCTATTTTTACCATCTGGGTAAGAT GGTACCTTGTTTTAGATTCCACATTGTATATTACATGGATTGTTTTTGTTGAGTGCTGAGTTCAATTTTTCTGTTTTTCC TCTCTTTTTGTTGGTTACATGAATGAATTTTATTTACAATCTTTGGACTCATTGGCTTTCATTCTTAATTTAACTATGAT GAGGCTTAGTTTCTGTAGTTCTTTATTGTGCTGCTCCTGAGATTGTTTGAACTTGGCTGTGCTTATTTCTTCTCAATTAG TGCTGCTGGCATGAAGTACTGATAGCATGTTTGGTTTCTCGATTTGTAGAGAATCAAAGGGACATTTACTCTACTTGTAG CTTCTAAGCAGAATTGATTCTACAGCATTTCATTGAGGAACCAAACATGCGATGAAGAACTGGAGCTGAGAATTGGCTTT TTGTTTAGCTTTTTTATCAAAGTGAAACCCTTCCGGCAGCATGGTTATCAGCAGAACATTGTTCCTTTTGGTTTTCTGCT TGTGGATTCCCTTGGAAGTGGTAGGGAGGACAGGACCTTCAACTACCCCTATGAGTTCTATTTCTTCAAGGCCAAAGGTT GTGAAATTAGGAGCCTTGTTTCCTTTGGACTCTGTCATTGGAAGATCAGCTAGACCTGCAATTATGGCCGCCGTTGATGA TGTTAATTCTAATACAAGCATTCTTGCCGGCATTGAACTCCAAGTTATTGTACATGATACAAACTGTAGCGGGTTTATTG GAACAGTGGAAGGTACTTGCCAAAACTGGAAATTTCAGTTGCTACAAGATGTTTCTTAGATCAGTTTGTTTTAATTTAAA CTATCTCCACCATTTCTATAAGATCTCATAGTTAACCTCTTAATCAAACATGAATAATCAATATTAGTTAGAGTTAAGTT CAATCTTGACTGTTCATGTTTGAATGACCTCTGTCCCTCTACGTGCATTTACATTGTAAAATTATTTCGTCTCAATTGCT TCTCAATATTGCTAAATCACATTCTCTTTTGGCTCCAACATAATTGACTCAATGAAGGATAACTGTGGTTTAAACGAAAA ATATCACATTCTCCCTGACTGCGTGCACCGAGAAATGAATCTTTACAGGACTAAAAACATTATGCTTGATTCATATTTAT GTCTCTTATTGTTTCCTTTTCGTGTGTGTGTGTAAAAGAAGTAAACAAGCTTTGATTACTTTTGTTGATCATGTAGCTCT GCAGTTGATGGAGAATGATGTGGTAGCTGTTGTTGGTCCTCAGTCATCTGGAATAGGCCATATCATCTCTCATGTTGCTA ATGAACTCCATGTACCTCTTCTGTCATTTGGGGCAACTGATCCAACTCTATCAGCTCTGCAATACCCGTATTTTGTACGT ACTACGCAGAGTGACTATTATCAGATGTTTGCAATTGCAGATTTAGTTGATTATTACAAATGGAGGGAGGTGATTGCCAT TTATGTAGATGATGATAATGGAAGGAATGGAATTGCTGTATTGGGTGATGCTCTGTCAAGGAAACGCGCCAAGATCTCTC ACAAGGCTGCATTCCCTCCTGGAGCCACAAAAAGTGAGATCAGTGAGTTGTTAAGTGGAGTAAACTTGATGGAATCGCGG GTCTATGTTCTTCATGTTAATCCTGATTCTGGTCTTGCAATCTTTTCTATTGCCAAAGAGCTAAAAATGATGGGCAATGG TTATGTTTGGATCACTACAGATTGGCTTCCTTCTATGCTGGACTCGTTAGAGCGAGTTGAGACTAGCACAGTGAATCTTT TACAAGGGGTTGTGGCTTTTCGTCATCATATTCCTGATACTGATCTTAAGAAGAATTTTATCTCAAGATTGAAAAGCCTT AAGGACAAGGAGACTGCAAACTTCAATTCATATGCATTTTATGCATATGATTCTGTTTGGTTGGCAGCTCGCGCCCTTGA TGTTTATCTTAATGAAGGTGGAAATCTATCTTTTTCCAATGACCCTAGGTTGCATGAAACAGAAGGAAGCATGTTGCATT TAGCATCGCTTCGTACTTTTTCTGGTGGTCAACAGTTTCTGCAGACAATTTTGGGGATGAACTTCACTGGTCTGCGCGGT CAAGTTGAGTTTGACATGGACAGGAATTTAATCCATCCAGCATATGATGTTCTTAATGTTGTTGGTGCTGAATTGCATAA AATTGGTTACTGGTCTAGTCACTCTGGTCTTTCAGTTGTGGCTCCTGAAATTTTATATGTGAAAAACTCATCTAATACCT CTTCAACAAGTAGTCATCAACTTTACAGTGTGATATGGCCTGGAGAGGCCAAAACTACACCTAGGGGATGGGTATTTCCC AACAATGGAAAGAAACTGAGAATAGCAGTTCCAAACCGAGTAAGCTTCAAGGAGTTTGTTGCTAAAGGTAAGAATCCCCC ATGGGTACAAGGCTATTCCATCGATATCTTTGAAGCAGCCTTAAAGTTGTTGCCTTATCCTGTGCCGCGACAGTATATAT TATATGGAAATGGTGAAAGGAATCCTAACTACAACCAGCTTGTGGAACGGGTTGCACAGAATGTGAGTTTCTAAATCTTG TGTCAGCATTGGTAATATATGGTTTAACAAGTAGAATTAAAATGGTTTAATAGGCTGCACAAAATGCGAGTTTCTACAGA GTATGAAATTTCAATGGCTGGTTCAAGGACATACCCTCCTATGTTTTTCAAATTCTTATATTTTAACTTGGTCCTTTTCT TGTTCAGAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTGACAAATAGGACAAGGATTGTGGATTTTACTCAACCTT TCATGCCATCAGGGCTTGTTATTGTTGTTCCTTTCAAGGAGGAGAAGTCAAATCCTTGGTCTTTCCTTGTGCCATTCTCT ACCCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTCGGAACTGTTGTGTGGATTCTCGAGCACCGTCTCAATCA TGAGTTTCGTGGTCCACCAAGGAAACAACTTATTACAGTCTTTTGGTTAGTAATTTTTTGAACCATTTGAAAGTCTTTTT ATCTGAATCATTTGGTTGATGATACAGATAAAGATCATCTTTGTGATAGACTTGGTAAGAGGGTGCATAACTTAAAGTCA GATATTTTTACTGAGATTAATTCCTATTTTACAGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGTAAGTACCTAGAT TCTCATCCACACCACTTAAATTTTTACATGTTACAATCCTTATTTCTATGGTGCATGGTACTTATTTGCTTTGTTGCTTA GGAGAGAACACTGTGAGTACTCTTGGGAGATTGGTGCTAATCTTATGGCTTTTTGTGGTGTTAATCATCAATTCAAGCTA CACAGCTAGCTTGACATCCATCCTCACAGTGAGGCAACTATCATCACAGATTGAAGGGATTGACAGCTTGATCTCGAGTA ATCAACCAATCGGAATCCAAGAAGGGTCGTTTGCGCGGAAGTATCTGATAGATGAGCTCAACATACCCGAATCTAGGATA GTTACTTTGAAAAACATGCAGGGCTACATTGATGCCCTTCAGCGTGGCCCGATAGGTGGAGGGGTTGCAGCAATTGTTGA TGAGCGTCCTTATATTGAGGTCTTGATGTCCAGCACCAAATGCAAGTTCACAACTGTTGGGGAAGAGTTCACAAAAAGTG GCTGGGGATTTGTAAGTATCATATTTTCATGTCCATGGTTCAGGGTTCTATATTTTATCTCTACCTTTGCATTGAAATAT GTGGTGTTTCATTTCTGTTGGGACTTGATGAGTTATGACTATTCAGAAGACACTCAAGAATTTCAGGTTGCTTTGTGTTA TGATGCTTCTGTGGCTATTCATCAAGGAAATTGGTTTTTTCTAGATTAAAAGGCTTTCCCAGTTGTTGAGAAGTCTCACA TTGATAAGGTCATGGTCAAATAAGTTCATATATAGGGTAGAGTATCCCTAAGCTAATTTTTGGGGTGGAGTTAAGCCTAT ACCAAATTCTAAGATGGTAACAGAGTCTATCCTGAATTCGTTTATTGGGCCACCCATAAATACCTCACCCGCATATATGT CCAGTCTTGCAACTTCACGATCCGGATGTTCAACCCTTGGCGTGAGGGCGGGTGGTGTGTTGAGAAGTCCGACGTTGACC AAAGTTATGACCAAATAAGTCCATATTTAGGGTAGAACAATCATCACCCCTAAGTTAGCTTTTGAGGGGTATCAAGATAT ATTGGTATGAATATGCCTTTTAGTTTTCTCTCAGAAAATTAATAACTAGTGACTAAAGAGTTGTTGTAATTTCGATGGTA GTTGAATTTGGTATGCTATATATATTCATAAACCAGTCATTTAGCTGTTCAAACTGCATCCTTTGATTAGTCTCCGTGTA TTTAACCCTTCTCCCTCTCTTCCCAGAAGAAAATATACTTCTGCCTTTTGAGTGATTTTGTTACATAATGTTTTAATGTT GAAACTTTCTACTTAAAAATAAGTAAATAAAGTTTTGTGATCTAAGCTCACACATGAACATTCTTTTAATATGATTGTGC TTGGTGTAACATTTGTTTCTCTGATAACAGGCATTCCAGAGGGATTCTCCCCTTGCTGTTGACTTGTCAACTGCTATCCT CCAACTCTCTGAAAATGGGAACATGCAAAAGATTCATGACAAATGGCTTAGCATCAAGGGGTGTGTAACCAATGGTGTTG ATTCAAACACGCTATCTCTGACAAGCTTCTGGGGCCTTTTTACTATATGTGGCATTGCATGTGTCCTTGCTCTGATTGTA TTCTCTGCTAGAGTGTGCTGTCAATATAACAAGAGCCTCAAGTCTGAGGAGGATGATGAAGAAATTCAACCAACCAGTTC CAGAAGGACAAGTAGAACTTCTAGCTTCAAGGACTTGATCGTTTTTGCAGATAAAAAGGAAACAGAAATTAAAGAGATAC TAAGGCAGAGTAAGAAAAGGAGGCACAGCAATAGCTTGGACTTGCAATCCATTTCCACCCACCTAAAGTCACCCTCTGCA TTATGATTGATGCATTGATTGCACTCTTTTTGTTTTTCTTCTTTTAGTTCTATAGTGATAGTGTTGGCACAAATTAGTCT ACACGTGTACGTATATTATTTCCTTCTTGGCAAGGAAATTGTGACTGCAAGAATGTGATTAATCACAA
CDS sequence (LotjaGi3g1v0465600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATCAGCAGAACATTGTTCCTTTTGGTTTTCTGCTTGTGGATTCCCTTGGAAGTGGTAGGGAGGACAGGACCTTC AACTACCCCTATGAGTTCTATTTCTTCAAGGCCAAAGGTTGTGAAATTAGGAGCCTTGTTTCCTTTGGACTCTGTCATTG GAAGATCAGCTAGACCTGCAATTATGGCCGCCGTTGATGATGTTAATTCTAATACAAGCATTCTTGCCGGCATTGAACTC CAAGTTATTGTACATGATACAAACTGTAGCGGGTTTATTGGAACAGTGGAAGCTCTGCAGTTGATGGAGAATGATGTGGT AGCTGTTGTTGGTCCTCAGTCATCTGGAATAGGCCATATCATCTCTCATGTTGCTAATGAACTCCATGTACCTCTTCTGT CATTTGGGGCAACTGATCCAACTCTATCAGCTCTGCAATACCCGTATTTTGTACGTACTACGCAGAGTGACTATTATCAG ATGTTTGCAATTGCAGATTTAGTTGATTATTACAAATGGAGGGAGGTGATTGCCATTTATGTAGATGATGATAATGGAAG GAATGGAATTGCTGTATTGGGTGATGCTCTGTCAAGGAAACGCGCCAAGATCTCTCACAAGGCTGCATTCCCTCCTGGAG CCACAAAAAGTGAGATCAGTGAGTTGTTAAGTGGAGTAAACTTGATGGAATCGCGGGTCTATGTTCTTCATGTTAATCCT GATTCTGGTCTTGCAATCTTTTCTATTGCCAAAGAGCTAAAAATGATGGGCAATGGTTATGTTTGGATCACTACAGATTG GCTTCCTTCTATGCTGGACTCGTTAGAGCGAGTTGAGACTAGCACAGTGAATCTTTTACAAGGGGTTGTGGCTTTTCGTC ATCATATTCCTGATACTGATCTTAAGAAGAATTTTATCTCAAGATTGAAAAGCCTTAAGGACAAGGAGACTGCAAACTTC AATTCATATGCATTTTATGCATATGATTCTGTTTGGTTGGCAGCTCGCGCCCTTGATGTTTATCTTAATGAAGGTGGAAA TCTATCTTTTTCCAATGACCCTAGGTTGCATGAAACAGAAGGAAGCATGTTGCATTTAGCATCGCTTCGTACTTTTTCTG GTGGTCAACAGTTTCTGCAGACAATTTTGGGGATGAACTTCACTGGTCTGCGCGGTCAAGTTGAGTTTGACATGGACAGG AATTTAATCCATCCAGCATATGATGTTCTTAATGTTGTTGGTGCTGAATTGCATAAAATTGGTTACTGGTCTAGTCACTC TGGTCTTTCAGTTGTGGCTCCTGAAATTTTATATGTGAAAAACTCATCTAATACCTCTTCAACAAGTAGTCATCAACTTT ACAGTGTGATATGGCCTGGAGAGGCCAAAACTACACCTAGGGGATGGGTATTTCCCAACAATGGAAAGAAACTGAGAATA GCAGTTCCAAACCGAGTAAGCTTCAAGGAGTTTGTTGCTAAAGGTAAGAATCCCCCATGGGTACAAGGCTATTCCATCGA TATCTTTGAAGCAGCCTTAAAGTTGTTGCCTTATCCTGTGCCGCGACAGTATATATTATATGGAAATGGTGAAAGGAATC CTAACTACAACCAGCTTGTGGAACGGGTTGCACAGAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTGACAAAT AGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTATTGTTGTTCCTTTCAAGGAGGAGAAGTC AAATCCTTGGTCTTTCCTTGTGCCATTCTCTACCCAAATGTGGTGTGTCACTGGTGCTTTCTTTCTTTTCGTCGGAACTG TTGTGTGGATTCTCGAGCACCGTCTCAATCATGAGTTTCGTGGTCCACCAAGGAAACAACTTATTACAGTCTTTTGGTTA GTAATTTTTTGA
Protein sequence (LotjaGi3g1v0465600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVISRTLFLLVFCLWIPLEVVGRTGPSTTPMSSISSRPKVVKLGALFPLDSVIGRSARPAIMAAVDDVNSNTSILAGIEL QVIVHDTNCSGFIGTVEALQLMENDVVAVVGPQSSGIGHIISHVANELHVPLLSFGATDPTLSALQYPYFVRTTQSDYYQ MFAIADLVDYYKWREVIAIYVDDDNGRNGIAVLGDALSRKRAKISHKAAFPPGATKSEISELLSGVNLMESRVYVLHVNP DSGLAIFSIAKELKMMGNGYVWITTDWLPSMLDSLERVETSTVNLLQGVVAFRHHIPDTDLKKNFISRLKSLKDKETANF NSYAFYAYDSVWLAARALDVYLNEGGNLSFSNDPRLHETEGSMLHLASLRTFSGGQQFLQTILGMNFTGLRGQVEFDMDR NLIHPAYDVLNVVGAELHKIGYWSSHSGLSVVAPEILYVKNSSNTSSTSSHQLYSVIWPGEAKTTPRGWVFPNNGKKLRI AVPNRVSFKEFVAKGKNPPWVQGYSIDIFEAALKLLPYPVPRQYILYGNGERNPNYNQLVERVAQNNFDAAVGDVTIVTN RTRIVDFTQPFMPSGLVIVVPFKEEKSNPWSFLVPFSTQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQLITVFWL VIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 597 | 575 | - | – | |
| PANTHER | 27 | 640 | 614 | 4.1E-294 | – | |
| PANTHER | 27 | 640 | 614 | 4.1E-294 | – | |
| SUPERFAMILY | 36 | 470 | 435 | 3.36E-88 | ||
| CDD | 42 | 433 | 392 | 2.60903E-131 | – | |
| PRINTS | 54 | 70 | 17 | 5.1E-8 | – | |
| Pfam | 58 | 414 | 357 | 9.4E-81 | ||
| Gene3D | 60 | 405 | 346 | 5.5E-92 | – | |
| PRINTS | 114 | 142 | 29 | 5.1E-8 | – | |
| Gene3D | 156 | 429 | 274 | 5.5E-92 | – | |
| PRINTS | 327 | 339 | 13 | 5.1E-8 | – | |
| SUPERFAMILY | 453 | 606 | 154 | 1.19E-24 | – | |
| SMART | 479 | 642 | 164 | 4.7E-6 | ||
| Pfam | 501 | 580 | 80 | 3.3E-9 | ||
| Gene3D | 502 | 574 | 73 | 1.1E-29 | – | |
| Gene3D | 575 | 584 | 10 | 1.1E-29 | – | |
| Gene3D | 585 | 641 | 57 | 1.1E-29 | – | |
| TMHMM | 596 | 618 | 23 | - | – | |
| Phobius | 598 | 618 | 21 | - | – | |
| Phobius | 619 | 643 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ionotropic glutamate receptor activity | Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts. | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0465600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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