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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0467100 |
| Transcript ID | LotjaGi3g1v0467100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT2G32460.1 myb domain protein 101; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|K7M2W6|K7M2W6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0467100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88264352..88267498) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTCTCAAACCCAAATTTCTCTTCTTCTTTGCAGAGTTGATTTCTTCACATAAACTCCACCATTGTTCAAAACCAAA ACACGGCAAAGAGAGGACAAAACAAGCTGGGATTTTCCGTTCCTTTCTATCACTCTTGTATTTTTTTCACTTTTTTATTT TGCCTCTCCTCTCTTTTCCACATTTTCTCTCATCTCGAGAGAGGAGAAATCATCTAACTCATCTCTGAAAGTTAACAACA TTTTGAGTTGGTGCTAGTTATAATATTCACAATGCCAAGAATGGTTCACAAAAATCATAACAAGGATAATGGCAATGAAG GTGCATCAAAGGAAGAGGGTGGTGAGGGAATGAAGAAAGGGCCTTGGACGCAAGCCGAAGATGCCATGTTAAGAGAGTAT GTGATGAAGTATGGTGAGGGGAATTGGAACTCTGTGCAAAAGAATTCAGGGTTGTCAAGGTGTGGGAAAAGTTGCAGGTT GAGATGGGCCAATCATTTAAGACCTAATCTGAAGAAGGGTGCATTTTCTAAAGAGGAAGAACAAATCATCATCCTCCTTC ATGCCAAGCTAGGAAGCAAATGGGCTCAAATGGCCGCACAGGTACGCTAAGTCGTATGTCCGAAGGGTGTTTAATGAAAT GTGTATGTCTATGTGTAATCATTCATATAAGATTATTACAGTTTTTTATTCATGACATTGTGGTTTGATCTGTTCATGGT TTAAGTTTGTTGAAGGACTCCTAATCATTTGGGGTTTGGATGTAAATATCAATGTGAAGTTTTAGATATTTCTTGCATAT ATATAAACTTTTTGCTATTTATTTTTATCAGATTTGGCTTTTGATTTAACTAGTGCTTAAGTCAGCACAGGCAACTCGTT CACAAAGCTGAATGTGTTGATAAACATGGCAGAAATTAGAAAGGGGATTGTCTAGCATTCATCATAATATTAATATATGA TACACTATTAATTAATTAGGATTGGATAGAAGTCATAGAACATTAGAGATGGACATTATTTTAATCACACCTCGTCCCTT AACCATGAGGTTGAGAGTTCAATAATCATTCATGGGAATGAAACACATTTCATAGTCAGTCATTTACCACTTTGTGTGAG CACCCTATCAGCGGTCAGCGCTAAATACCTTGGGCTCACCCAAAATATGTATCCACTTTAATGTAAAATCCGTCCTCATG ATGTGATATATGTATGTATCTATCATTTAGATATTAGTAAGCTTTTTTTTAGTTTTCATTTATATATGACCGTTTCTATC TTATAAAATTACCTTGTTTATTTCATTTGTATCTTATCACATCATCCTACCATCTTCAAAGCTGTTCTTTTTATGGCTGA AAAACTAGTTTAAATTATTTCTGTTGTTTCCTCTTTTCCACTTCTTCATCACATCTAGTCATTGCATGATTTTACTTCTA TATTGCTTGAACTTTCTAGCTTCACACTATCGGTAATTAATGGCTTGTGTCTCTATGGTTACAGTTACCTGGGAGAACAG ACAATGAAATAAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAAAGAGCTGGTTTACCTCTTTATCCTCCAGAAGTA TTCCTACAAGAAGCTAAGAACACATACTATCTAGAACAACAAAAGCATAAACAGAACTTTAGATCACAACCTCACTCCCC ATCATCCCTATCATTTTCTACATTTTTATCTTCCTCATATCCTCAAGAACTTAATACACTAAGCCACTCCTCCACCACAA ACCCCCAACAAAACGTGCCTAATTCTTCTTCTTTAATCAATTCACACCCTCAGTTCAAGTCTCCCAATGACAAATTTGGA ATGGTTCTGCCACCATCCACTGTTTCTTCACATGGCTATTCTTTCAACCAGTGTAATTCCATGGCAAGATCTCAACAACA AGACTCACTTTCTTCGAGCCAATCAGCACACGATGGCTCCACCACCCCTACATCATCCCACAATAGTGGTGTTTATGGCT TGATGGGAGCTTCAAGTGGTGTGGCTAATGGCTACTATGAAGATGCTCAAGTGGTGGAGGCTCAAAGTCTTTCTCATAAT GACAAGTTAATGAGTGAGGATTCAACTGCAGCAGGGAAAAATTTATCTTGTAATAAGAGGAAAAGCATGACTCAAGAGGA TGGCACAATGCTGGTGGAGACAACTATGGAAAATAGTGGTAACTTCACTAATAAGAAACAGAGGAATGATGTGAGCTCTT CTCAATTTTTAACAGGTGAGACAGGGAGAAACTAATAATTTTTCTTTTATAAGTGCATGTTTGGAAATTCTATAATTGAT TTTGGAGTCAAAATCAATTCTGAGAAGAAGGTTATGTGAGTAGCTTTTAGATGTTAGAATTGATTTTAGGGAAAGAGAAG ATGATCCAAACATACTATAAATAATATGATTTTGCATGCTTGTATATATTATATATATGACTATTTCACTAAAGTTGATT GAAACTGTGTATTTGCACAGGGAAGAAGCTAATTTATGAAGATTCAATGGAGGAATTGAATTCCATGGATGATGACTTAT TCAGCCTTCTCAACAATTTCCCATCAGAAGTGCCTGTGCCTGGATGGTACCGCAATGGAGAAAGACAGTCATTAGGACTT GAAACTCAACAAGATGCTTCATCTTCTAGCCCCACAGGTCAAGAATTTGCTTGGACTCTAGGAAATTTCTGGAGCAATGT GCCTAACATATGCTGAATCTAGTGAAATATATGTATTAACTTTTAAAGGACAAAGAGAGAAAGTAGAGATTAATATAAGC CCATATTGTATGAAAGAATGTAAAGGGCTAGAGCTCATGTCAAAACTAGGATGCCATGAGAGTGTGTGGATTTGTGAGGT GAGATATATAGGTTTGGAGTCTAGAGGTTATTTTAGCTGGCTAAGGTTTTCAAAGCATTCAAACCATTTCCCACCCCCTC AAAAGAACAAGGTGTGGTGTCGGAGTTAGAGACTTCCATTTATAATTTTAGGATTTCTGCAGGTACGAATTATACCATAT ATACAAAGAGTTAAAGTGGAACTCCTTGAATATCTGTGTATAGTACATACATTTCGTGATTTTTAAACTCTCCAAAAGTA CCTCTGCCTATGAGCATCTCCATCTAC
CDS sequence (LotjaGi3g1v0467100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAAGAATGGTTCACAAAAATCATAACAAGGATAATGGCAATGAAGGTGCATCAAAGGAAGAGGGTGGTGAGGGAAT GAAGAAAGGGCCTTGGACGCAAGCCGAAGATGCCATGTTAAGAGAGTATGTGATGAAGTATGGTGAGGGGAATTGGAACT CTGTGCAAAAGAATTCAGGGTTGTCAAGGTGTGGGAAAAGTTGCAGGTTGAGATGGGCCAATCATTTAAGACCTAATCTG AAGAAGGGTGCATTTTCTAAAGAGGAAGAACAAATCATCATCCTCCTTCATGCCAAGCTAGGAAGCAAATGGGCTCAAAT GGCCGCACAGTTACCTGGGAGAACAGACAATGAAATAAAGAACTTTTGGAATACCAGAATGAAAAGGCGCCAAAGAGCTG GTTTACCTCTTTATCCTCCAGAAGTATTCCTACAAGAAGCTAAGAACACATACTATCTAGAACAACAAAAGCATAAACAG AACTTTAGATCACAACCTCACTCCCCATCATCCCTATCATTTTCTACATTTTTATCTTCCTCATATCCTCAAGAACTTAA TACACTAAGCCACTCCTCCACCACAAACCCCCAACAAAACGTGCCTAATTCTTCTTCTTTAATCAATTCACACCCTCAGT TCAAGTCTCCCAATGACAAATTTGGAATGGTTCTGCCACCATCCACTGTTTCTTCACATGGCTATTCTTTCAACCAGTGT AATTCCATGGCAAGATCTCAACAACAAGACTCACTTTCTTCGAGCCAATCAGCACACGATGGCTCCACCACCCCTACATC ATCCCACAATAGTGGTGTTTATGGCTTGATGGGAGCTTCAAGTGGTGTGGCTAATGGCTACTATGAAGATGCTCAAGTGG TGGAGGCTCAAAGTCTTTCTCATAATGACAAGTTAATGAGTGAGGATTCAACTGCAGCAGGGAAAAATTTATCTTGTAAT AAGAGGAAAAGCATGACTCAAGAGGATGGCACAATGCTGGTGGAGACAACTATGGAAAATAGTGGTAACTTCACTAATAA GAAACAGAGGAATGATGTGAGCTCTTCTCAATTTTTAACAGGGAAGAAGCTAATTTATGAAGATTCAATGGAGGAATTGA ATTCCATGGATGATGACTTATTCAGCCTTCTCAACAATTTCCCATCAGAAGTGCCTGTGCCTGGATGGTACCGCAATGGA GAAAGACAGTCATTAGGACTTGAAACTCAACAAGATGCTTCATCTTCTAGCCCCACAGGTCAAGAATTTGCTTGGACTCT AGGAAATTTCTGGAGCAATGTGCCTAACATATGCTGA
Protein sequence (LotjaGi3g1v0467100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRMVHKNHNKDNGNEGASKEEGGEGMKKGPWTQAEDAMLREYVMKYGEGNWNSVQKNSGLSRCGKSCRLRWANHLRPNL KKGAFSKEEEQIIILLHAKLGSKWAQMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVFLQEAKNTYYLEQQKHKQ NFRSQPHSPSSLSFSTFLSSSYPQELNTLSHSSTTNPQQNVPNSSSLINSHPQFKSPNDKFGMVLPPSTVSSHGYSFNQC NSMARSQQQDSLSSSQSAHDGSTTPTSSHNSGVYGLMGASSGVANGYYEDAQVVEAQSLSHNDKLMSEDSTAAGKNLSCN KRKSMTQEDGTMLVETTMENSGNFTNKKQRNDVSSSQFLTGKKLIYEDSMEELNSMDDDLFSLLNNFPSEVPVPGWYRNG ERQSLGLETQQDASSSSPTGQEFAWTLGNFWSNVPNIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 22 | 252 | 231 | 9.4E-91 | – | |
| PANTHER | 22 | 252 | 231 | 9.4E-91 | ||
| ProSiteProfiles | 24 | 76 | 53 | 15.912 | ||
| SUPERFAMILY | 26 | 123 | 98 | 3.13E-29 | ||
| Gene3D | 27 | 82 | 56 | 1.8E-20 | – | |
| SMART | 28 | 78 | 51 | 4.8E-15 | ||
| CDD | 31 | 76 | 46 | 1.03407E-11 | ||
| Pfam | 32 | 91 | 60 | 3.9E-14 | – | |
| ProSiteProfiles | 77 | 131 | 55 | 22.656 | ||
| SMART | 81 | 129 | 49 | 5.8E-14 | ||
| CDD | 84 | 125 | 42 | 1.72998E-10 | ||
| Gene3D | 84 | 167 | 84 | 2.8E-19 | – | |
| MobiDBLite | 185 | 216 | 32 | - | – | |
| MobiDBLite | 185 | 227 | 43 | - | – | |
| MobiDBLite | 242 | 273 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0467100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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