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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0472800 |
| Transcript ID | LotjaGi3g1v0472800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT5G22220.2 E2F transcription factor 1; Swiss-Prot: sp|Q9FV71|E2FB_ARATH Transcription factor E2FB; TrEMBL-Plants: tr|K7LQ43|K7LQ43_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0472800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88995617..89001217) extracted from Lotus japonicus Gifu genome v1.2.
GCAGATATAAGTGTTTCCTTCCCTCCACATCTGTATCCGAACCAAATTCCCTCCCTCGTTTTCTGCTCTCTTTCTCTCTC CCGCTTTTTTCATTTTCCGACGACCCAGATCTCACCCTCCATCGCCGCCGGCCACGGTGGATGTCGGGCAAACGACCTCC CCCTGCCGCCGCCGACCCGCCGGACCAGATCATGCACTCCATGAAGCGTCAGCTCCCCTTCGTAGCAGCAGCTTCCGGTG ATTACCATCGCTTCACCCCTGACCGCCGCCGGAACCCTGACCAAGTCGCCGAAGCCATCGTCGTCAAGACTCCAGTCAGT ATTTCCTAATTTCATTGATTTTTCTACACAATTTTTTGGTAGTTAATTTTCATTTTATTGTTCTTCGGTTTCGCGTTCCA AGTTAATTTATAGAACTAGAGATCTGTTCAATTTTGAAGTGTTCATCAGTTACTGACTTGTTAATTTGTTGCAATTCATC ACTGGATTAGTTCTGGATGTGACACTGGACTTGAATTTCAACTTGGGGTTTGCTAATGAAGGCGTTTTGTTGAAATTTAG TACAGGAACTTGTTGGTGTGGTGTAATTTAATGAGGTATATATATGATGAGAGGATAAGCTTGTTGATTACCCCAGAAGT TGTGATCATGATGTGATTGTCAATTAGATGCTTTCAAGTGTTTATGAAATACCCTTTGAGTTTATGTGCAGTTTTTTAAA GTCTCTTTACTTTTAAGTTGAACCATTTTGATTTTACTGAATCAAATATATAATATAGGTGTTGGAGCTTGTGAAATTCA CATGTTCTTAGGCATCACAATCCACATTTTCCTTAATCAGGGATTCTGGGTCAAGCAATGTTGCTATCCTTGGGGTACCT TTTTGTACTATCTGATTAAAGCCAGGGTGTATGTCTGTGTATATGTCACGCCTAGCCCTTCTAACTTTGGGGCTGTGGGA AACATGTTCTTGAATTGAGGGTATCCAATAATGTGAATAAGTGATTTATGCATTATTTTGGGAAGGATTGGCCTGCTAAC TCTTATAAATGCCGTGGAAGATTGCCTTTATTTCATTTCTTTCTTCAAAAATCATTGACATGTTTAGAAGTATTGAGTTC TGCTGGTCTTGTCCTTGGTGAATGTTATGACTAGATATTTCTTTGCAACTACCTTCTTGCATGGTGTGAAGCTATATATA GATTATGCGTTATGGTCAGATGATCATGGTGCATATATTATTTTTTAAAATATAACTCTTACAATTCTTACTGCTTCTGC TTGTTATCTCTTCTATTGATTGCACATATTATGTAAATACATTTCAGCAATTGAAGCGGAAGAATGAAGCAGCTGATTTT GAAGCTGATTCAGGTGATAGGATGAATCCTGGGTCCACTGAAGCAGCTATTAGTCCTTTTCAAACACCTTTATCAGGAAA GATGGGGAAGGGAGGCAAATCCTCTAGGCTAACAAAATGCATCAAATCTGCAACTCAAACCCCAGGACCAAATATTGGTG AATATTACCTTACAAAATTGTTTCAGTAGGCTTCTCGTTTATTGTTTCAGTAAAACATTCAGAGAAAATTAAGATAGTCT GATCTTTTTGTTGCCAATTAGATTGCTATGAACTAATATTCACCACCTTTCCTTTACCTGTAATTTTTAAGCAGTCAAAG TCATACATGATTTCTATAAATTTGGCAGGTTCTCCTTCAGCTAATAACCTCACTCCTGCTGGTTCATGTCGTTACGACAG CTCTTTGGGTATGACGACATTGCTCTGATTTATTGTTGATCATCAATTGTATTGTTATGAAATTCTTTATATAGGGTAAA TTACACATTACACACTTGTAGTTTCACCTGTTATCAGATTGCGTCATTTTTTTTCCTTTCTGTCTCTTAAGTCTTAACCC CTGAACTATGGTTTAAGTTCATTCTATGAAAGAAATGGTTTTAGTTGAAAACATTGATTTTTCAGTTAAATTTAATGTTT ATTTTACATACTTCTCCCTTGTGGCTTAACATTTTCTCAACTTCACTCCTTTAGGGGGCAGGTTGAGAAATATTAAACTT CCATTAAAATTAATTTAAAAGTTCACATTTTTCAAATTAAATCAAAGTTGAGGGGGATACGTGACAGAAATATCTTAAAA AATGGTGAAACCAATGGAGGTAAAGTGTAATTCAACCTTTCTATATGCGTTTCACTGGCAAAATAAGTCTGTATACATTT TCTCTTTTAAATATCCTATATATGATTTTCTTAGAATAAACAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACA AGCAGAGGATGGTATGCTTGATCTGAATAAAGCGGCTGAGACATTAGAGGTGAATATATTTACTTTAGGTCTAAAGATTT CATGCTGAAAAGTTTGATAACTTGAAAGTACTTTTTGCTCTACAGGTACAAAAGAGGAGGATATATGATATAACAAATGT TCTTGAAGGGATTGGGCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAGTAGGAATGCTTTCTATATAACTGTC ATTGTTGTCATATTTGTTATCTGAAGTGTTGAAACACTTTTACCTATTCGTTGTTGATTGGTCAGGGGTCTGGATGTTTC AAGACCAGGGCAGGGTGATGACAGTTTTGGTAGTTTACAGGTTAGGAATGATTCAATTTTCTGCTTGGAATTCATGTGGA GATGACTTTCTTTGGATGATATAAAGATTGATGATAGGTTGAATACATGATTTCTTGTCATGACTTCACTCTGAAGCTAG GTTGTCAATTAAATTATTTTATGTGAGAGCTTGCGAATTTTTTTTTTATTTTGATTTGGTAGAAATAAATGTATATACTT TCATATCAGTTATCATGTAATTTGCTTTGCATTTAGCTTTATATAATTTATTGCATATAAACTTTCAAGAAAGGTATATT TATTCCTTAAATATGTTGGCATGTGATTTATTTTTGTCTCATCTGCAGACAGAAGTTGAAAATTTAACAATAGAGGAGCG CCAGTTAGATGAACAAATAAGGTTTGCGTGCCATGTCTTCACTGATTCTTCTTTATCATGAAGTTCTAATGCTTGTCTGT TGTCTATTTAAAGTTTAAGTTTTGAAACTATTGCAGAGAGATGCAAGAGCGACTACGGGATCTTAGTGAAGATGAAAACA ATGAGAAGTAATATTTGTTTTACCTTTAACCATTGGGTCATTTGCCGCATTTTTTTCTATAACCTTATTTGATGTGTTTT TCTTTAATCAATTTTCACCTTCATAGGTTGCTTTTTGTCACTGAGGAAGATATAAAGAAATTGCCCGGCTTCCAGGTTGG TTTCCTTATCTTGCATTTTAGTAAATATTTTTATAGGGCAATTCTATTTTCTTTGCATATTAACTATAAAACTTATTTTG AATGTTGGCTGATGACCTTGTCTTTCTACTGCTAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACTACTTTG GAGGTCCCTGATCCTGATGAGGTAATTTGAGAGTGCATGAAGAATTGTATACAAGTTTTTAATATTGCATGCATCTTTCT CACATCAAGTTCCTCTTCTACTAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGTACAATGGGCCC AATAGATGTTTACCTTGTTAGGTGTGCCTGCTTTATTTGTATTTTTTTTTTGGGGGGGGGGGGGGGGGGTTCTGAAATCA TTTACTTCGAGGGTTATTCTGTTATTGCAATGGCATGGTCACATGACAGTGCCAGGTGAAGCAGTGATGCTTGAAGGTTG CAGTACATACTAAAGTTGAATTCTGACTGATCTTCCCTTTTCTTCTCTGCTGTTGTAGCCAATTTGAAGAAAAGTTTGAG GAGATTAATGGTGGAAATGTTGTATCAAATGTTCCATCAAGTCCAGAGTTCAACCAACATCAACCAACTGTGGTTCCAGA TAGAGGAAAGGACATAGAAGTGCAGGGACAGGATGGCCAGGGGGCTAGTTCGGGTTTTACTACCTCTCAAGATTTCGAGA GTGGGATGATGAAGATTGTTCCTTCAGATGTTGCTGTAAGTATCACCTCAGTCTGCATGATATTTTTTTATGGATTTGCA AAGATTACTTCTGTGCTGAGAATACATATATCAAATTGTGAGGATAGATTAGAGGGTATCTTATGGTACCCATAAGCTGG AGGGTGTTTATAATTATATATCAAATTATTTACACAAATCAATTGTTGCATATTTCTTATTTAATTTGATTACATAGTGT TTCCTGTTTCTTTCTTGTAACCATGGAATTATTGTTGTTTCTGATTTAAGAACTGAAAGCAAAAGTCTTGGAGCTCATTT GAAACTATTTTCCCCCCTTTGCAGAGTGATGCTGATTACTGGCTTATATCAGAGGCCGATGTTAGCATAACTGACATGTG GAGCTCAGAACGTATTCTTTCTTGGACTCCTTAACCTCCATTTTATTCTTCTTATTACTCACTCACACACACAACACACG TACACAATAGGAAGGAAGGGGTTTGAGAGTTCCATGTTTTGTTGATAATTTGAAACTTTTCTTGATGCAGTTACAGCTGG GGTTGAATGGAATACACTGGACACACTTCAAGATGTAATGACTCGTGAGCAAACTACAACCCCAAGTCATCATTCGAACG TCAGTGAAGTGGCTTCTGCATCAAACCCTACTGGAGGTTGAAGTTTCCAATGGATATTGTGAATCTGAAGGGTAAGTGAT GTTCTTTTTTCAACTGAGAACCTATGACATCCGACCCTTCCTTGTTGTATCCTCTTCAACATACTCCTAGAGGTTGGATT GAAGGTTTCATGAAGATGCTTTCTGAAGCTTCCTCCAAGAAGTTCGTCCGAGGAACCGAGTGGCCAGTTAACTGGCTCAT TGTACAGTTAATATAACATGTGGGGGGGGGGGGGGGGGGGGGAGAATTGCTGTGGCTTAGGTGAACCCATCTTTGTATAT TATGTAAATCTTGACTTTCTAGAGAACTTGTAGCAACCAATAAAAATGCAAATTGAAATAGACATTTTCTCAGGCAATGT CTTCATAAGTCATAACCAGTTCAATGCATGCGATACAGATACTTGTTGCTCAAATTATTGTTTATCATCAACCATAATGA TAGGCCCCTAAATAGAGAATGGGCTGAGACAATTAATCCTGAGACAATTAATCCAAGGCCCAAGGTATGGCACGTGCATG TGAGGAGAGGAAAGGAAGGAAGCATCCAGAAGAAGAGTGAGCTGGCAGTGTGAGAAAGGGTGCTAGGAAGAGTTAGTTAC GGGAATTAGGGGAATTGGTGTATAAAGGGGATTCTGTTAGTAGGGGAGAGGTATCTGAGAATATTGTGCTTGTAAGAGTG AATAGAGAAATGCCTTCTCTATAGGAGCTTAGCTCTGGAGTAGTAGTGATACTATTGTAATTGTCCTTTTCCATTAATTC AATCAAACGATTCCCAGTTTTCTTTTCATTTCCTCTTTACTGTTTCTTTGGTTCCCATCAAATTGGTCCGACCTGCCGGA T
CDS sequence (LotjaGi3g1v0472800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGGCAAACGACCTCCCCCTGCCGCCGCCGACCCGCCGGACCAGATCATGCACTCCATGAAGCGTCAGCTCCCCTT CGTAGCAGCAGCTTCCGGTGATTACCATCGCTTCACCCCTGACCGCCGCCGGAACCCTGACCAAGTCGCCGAAGCCATCG TCGTCAAGACTCCACAATTGAAGCGGAAGAATGAAGCAGCTGATTTTGAAGCTGATTCAGGTGATAGGATGAATCCTGGG TCCACTGAAGCAGCTATTAGTCCTTTTCAAACACCTTTATCAGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGCTAAC AAAATGCATCAAATCTGCAACTCAAACCCCAGGACCAAATATTGGTTCTCCTTCAGCTAATAACCTCACTCCTGCTGGTT CATGTCGTTACGACAGCTCTTTGGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATGCTT GATCTGAATAAAGCGGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGG GCTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAGGGTCTGGATGTTTCAAGACCAGGGCAGGGTGATGACAGTT TTGGTAGTTTACAGACAGAAGTTGAAAATTTAACAATAGAGGAGCGCCAGTTAGATGAACAAATAAGAGAGATGCAAGAG CGACTACGGGATCTTAGTGAAGATGAAAACAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAAATTGCCCGG CTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACTACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTG ATTATCCACAGAGGAGATACAGGATAGTCCTGAGAAGTACAATGGGCCCAATAGATGTTTACCTTGTTAGCCAATTTGAA GAAAAGTTTGAGGAGATTAATGGTGGAAATGTTGTATCAAATGTTCCATCAAGTCCAGAGTTCAACCAACATCAACCAAC TGTGGTTCCAGATAGAGGAAAGGACATAGAAGTGCAGGGACAGGATGGCCAGGGGGCTAGTTCGGGTTTTACTACCTCTC AAGATTTCGAGAGTGGGATGATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTTATATCAGAGGCC GATGTTAGCATAACTGACATGTGGAGCTCAGAACTTACAGCTGGGGTTGAATGGAATACACTGGACACACTTCAAGATGT AATGACTCGTGAGCAAACTACAACCCCAAGTCATCATTCGAACGTCAGTGAAGTGGCTTCTGCATCAAACCCTACTGGAG GTTGA
Protein sequence (LotjaGi3g1v0472800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGKRPPPAAADPPDQIMHSMKRQLPFVAAASGDYHRFTPDRRRNPDQVAEAIVVKTPQLKRKNEAADFEADSGDRMNPG STEAAISPFQTPLSGKMGKGGKSSRLTKCIKSATQTPGPNIGSPSANNLTPAGSCRYDSSLGLLTKKFINLIKQAEDGML DLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQGDDSFGSLQTEVENLTIEERQLDEQIREMQE RLRDLSEDENNEKLLFVTEEDIKKLPGFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFE EKFEEINGGNVVSNVPSSPEFNQHQPTVVPDRGKDIEVQGQDGQGASSGFTTSQDFESGMMKIVPSDVASDADYWLISEA DVSITDMWSSELTAGVEWNTLDTLQDVMTREQTTTPSHHSNVSEVASASNPTGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 438 | 423 | 6.7E-203 | – | |
| PANTHER | 16 | 438 | 423 | 6.7E-203 | ||
| MobiDBLite | 83 | 104 | 22 | - | – | |
| Gene3D | 130 | 203 | 74 | 1.5E-29 | ||
| SUPERFAMILY | 136 | 199 | 64 | 2.9E-17 | ||
| SMART | 136 | 201 | 66 | 2.4E-34 | ||
| Pfam | 138 | 201 | 64 | 1.7E-24 | ||
| Coils | 152 | 172 | 21 | - | – | |
| CDD | 212 | 318 | 107 | 1.24578E-48 | ||
| SUPERFAMILY | 215 | 318 | 104 | 8.11E-33 | ||
| Pfam | 217 | 316 | 100 | 1.5E-34 | ||
| Coils | 217 | 255 | 39 | - | – | |
| MobiDBLite | 353 | 374 | 22 | - | – | |
| MobiDBLite | 429 | 454 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0472800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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