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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0475300 |
| Transcript ID | LotjaGi3g1v0475300.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT5G22360.1 vesicle-associated membrane protein 714; Swiss-Prot: sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714; TrEMBL-Plants: tr|B7FI29|B7FI29_MEDTR Synaptobrevin-like protein; Found in the gene: LotjaGi3g1v0475300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89205202..89205611) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGA CAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTGTGAGTAA ATTTTCTTTGATATGCTGAATATAAATAATATATATTTCAAAAGTATTCATTTTAGATATGGGGTACCTGAAGTTGTTTA TATTTATCTTGGAATGCAACAATGGGCTTATTGCTCTTCTATCCTTGTCTTGACTTGATGTTTTTTTGGTCTTTGACAGC GCATTATTGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTG CAGATCCTAA
CDS sequence (LotjaGi3g1v0475300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTCGTTGATAAGACAGCAACAATGCAAGA CAATTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCGCTATGGATGAAAAATTTCAAGCTCCTCGCATTAT TGACATGCTTGATTGTTCTCATTCTTTACTTCATAATCGCTGCTTGTTGCGGAGGCATCACTCTACCATCCTGCAGATCC TAA
Protein sequence (LotjaGi3g1v0475300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDNIEKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFIIAACCGGITLPSCRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 70 | 70 | 2.6E-21 | – | |
| Pfam | 1 | 71 | 71 | 9.4E-26 | ||
| CDD | 1 | 44 | 44 | 6.16798E-21 | – | |
| ProSiteProfiles | 1 | 46 | 46 | 14.701 | ||
| PANTHER | 1 | 71 | 71 | 1.3E-27 | – | |
| SUPERFAMILY | 1 | 48 | 48 | 1.57E-15 | – | |
| Phobius | 1 | 49 | 49 | - | – | |
| PANTHER | 1 | 71 | 71 | 1.3E-27 | – | |
| ProSitePatterns | 4 | 23 | 20 | - | ||
| PRINTS | 11 | 30 | 20 | 5.0E-6 | ||
| PRINTS | 47 | 66 | 20 | 5.0E-6 | ||
| Phobius | 50 | 75 | 26 | - | – | |
| TMHMM | 50 | 75 | 26 | - | – | |
| Phobius | 76 | 80 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi3g1v0475300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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