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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0478100 |
| Transcript ID | LotjaGi3g1v0478100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly [ADP]-ribose] polymerase; TAIR: AT5G22470.1 poly ADP-ribose polymerase 3; Swiss-Prot: sp|Q1SGF1|PARP3_MEDTR Putative poly [ADP]-ribose] polymerase 3; TrEMBL-Plants: tr|G7JIG7|G7JIG7_MEDTR Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi3g1v0478100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89459119..89461273) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTAATTTGGGGCAGCTACTGTGTCATGCAACTGATTATGGTCCCAGAGAATCGTTTGCACCTCTACTTTAAAAAGGG TAGAGTTGGAGATGATCCAAAAGCAGAGGAGCGAGTAGAAGAGCATGAGAATGTTGACAATGCTGTTAAGGAGTTTGTAA GGCTCTTTGAGGAAATAACAGGAAATGAATTTGAATCATGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTT TACCCTATTGACATGGTACATATCTATTCCCTCCCATGGTGATTTATATGTCACTTCTCTTTCAGCTAACAAGTAATCCT ATGGTATTGCATAGGATGATGGAGTTGAAGTTAGACATGGAGCACTTGGACTTAGGCAGCTAGGAATAGCAGCAACACAT TGCAAACTTGAGCCTATGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGGGATATATAAGTGAGTAAAATCATAAAA TCTTAACACAAACTTGTATGAATTTAAAGATCCAAAATAACCTTGCATTGAATTCAGGTATGCATTGATGGAGATGGGTT ATGATTCACCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTATGTACATGGCAACACTTCATTTT TTAATTCAAGTTATATAATTCAGAAAGACTGACAATATTAACTCTCTCAGGTGAGGAAGTCTTGTTAGAATTCATAGAGA AGGTGAAGTCATTGAAAGAGACTGGGCCAAAGGCTGAGGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACACTGATG CACTCCACAAGGCCTTTCATTTTTAGGGATTATCAGGAGATTGCAGATCATGTAAGCCCCAAATAATCACCACCTATGTT GTTTCAACCACTTATGACTGAGACTTTTCCCTGGTTTTCCAGGCTGCTGCTGCCTTGGAGAGTGTTCGAGACATAACCCT TGCTTCTCACCTCATAGGAGATATGAGTGGCTCTACCATTGATGACCCATTGTCAGACACATATAGTAAATTGGGTTGCT CAATTTCTCCCTTGGAGAAAAATTCAGATGATTATGAGATGATTGTGAAGTACCTTGAAAAAACTTATGAACCAGTCAAA GTTGGTGACTGTGTAAGATTAGAACTCTACTCTTCCGATGTTTTGAGTGAATGTGAATATCTTGAATGTTTTTCAATGTT CCTATGAATTTCAGGAATATGGGGTGTCAGTTGAAAATATTTTTGCTGTGGAACCAAGTGCTGGTCCTTCCTATGAAGAC ATAGTCAAGATGCCAAATAAGGTTCTTCTATGGTGTGGTAAGACACTAGATCATTCTCCACATTGTACAAAAGTAGGATT GTGATTTTCTTGGTTCTTCTCAATAATCACACAAAATTCTATGATTATGTTATGCAAGGATCACGAAGCTCAAATCTTCT GAGGCACTTGCACAAGGGGTTCTTGCCAGCAATATGCTCGCTACCAGTTCCGGGTTATATGGTATCAAGAAATACAAAAT GATAATTTCTTCTATTCTAATGATAGTGATTCTATTTTCTCATTGCTTTTTATGTGATTTTGTCATCAGTTTGGCAAAGC TATTGTTTGCTCCGATGCTGCAGCAGAGGCTGCTAGGTATGGTTTCACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTT TGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAAGCCCACCAGAGGTAGCCGCTTGTAGAGTTGTTGTGTCC ATTCTTATTTTATCTCTTACAATTGTTATACTGACATGGTTTGAAAATGATTTAGGATACAACACCTTTGGAGGAAAAGA AGCTTGGAGTGAAGGGGTTGGGGAAGAAGAAAACAGATGAATCAGAACATTTTGTTTGGAAAGATGACATAAAAGTCCCT TGTGGACGAATAATTCCATCAGAGCATGAAGATAGCCCCCTGGAATATAATGAATATGCTGTCTACGATCCTAAGCAGGT ATAACCTTTATCTTAAAGTTTGAGCTACATTTTCAATTGAGAGAAACACTTCTCGTTGATCTCCACAATTTTGTTTTGCA TTGCAGGTACGTATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAAGGCACTGTGATGGACACAGCAGAGTGA
CDS sequence (LotjaGi3g1v0478100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACTGATTATGGTCCCAGAGAATCGTTTGCACCTCTACTTTAAAAAGGGTAGAGTTGGAGATGATCCAAAAGCAGA GGAGCGAGTAGAAGAGCATGAGAATGTTGACAATGCTGTTAAGGAGTTTGTAAGGCTCTTTGAGGAAATAACAGGAAATG AATTTGAATCATGGGAAAGAGAGAAGAAGTTCCAGAAGAAGCCATTGAAGTTTTACCCTATTGACATGGATGATGGAGTT GAAGTTAGACATGGAGCACTTGGACTTAGGCAGCTAGGAATAGCAGCAACACATTGCAAACTTGAGCCTATGGTTGCAAA TTTTATGAAGGTTTTGTGCAGCCAGGGGATATATAAGTATGCATTGATGGAGATGGGTTATGATTCACCAGACCTTCCAA TAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTCTTGTTAGAATTCATAGAGAAGGTGAAGTCATTGAAA GAGACTGGGCCAAAGGCTGAGGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACACTGATGCACTCCACAAGGCCTTT CATTTTTAGGGATTATCAGGAGATTGCAGATCATGCTGCTGCTGCCTTGGAGAGTGTTCGAGACATAACCCTTGCTTCTC ACCTCATAGGAGATATGAGTGGCTCTACCATTGATGACCCATTGTCAGACACATATAGTAAATTGGGTTGCTCAATTTCT CCCTTGGAGAAAAATTCAGATGATTATGAGATGATTGTGAAGTACCTTGAAAAAACTTATGAACCAGTCAAAGTTGGTGA CTGTGAATATGGGGTGTCAGTTGAAAATATTTTTGCTGTGGAACCAAGTGCTGGTCCTTCCTATGAAGACATAGTCAAGA TGCCAAATAAGGTTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTCTGAGGCACTTGCACAAGGGGTTCTTGCCAGCA ATATGCTCGCTACCAGTTCCGGGTTATATGTTTGGCAAAGCTATTGTTTGCTCCGATGCTGCAGCAGAGGCTGCTAGGTA TGGTTTCACTGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGA AAAGCCCACCAGAGGATACAACACCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGGTTGGGGAAGAAGAAAACAGATGAA TCAGAACATTTTGTTTGGAAAGATGACATAAAAGTCCCTTGTGGACGAATAATTCCATCAGAGCATGAAGATAGCCCCCT GGAATATAATGAATATGCTGTCTACGATCCTAAGCAGGTACGTATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAAG GCACTGTGATGGACACAGCAGAGTGA
Protein sequence (LotjaGi3g1v0478100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQLIMVPENRLHLYFKKGRVGDDPKAEERVEEHENVDNAVKEFVRLFEEITGNEFESWEREKKFQKKPLKFYPIDMDDGV EVRHGALGLRQLGIAATHCKLEPMVANFMKVLCSQGIYKYALMEMGYDSPDLPIGMVTNLHLKRCEEVLLEFIEKVKSLK ETGPKAEAVWSDFSQRWFTLMHSTRPFIFRDYQEIADHAAAALESVRDITLASHLIGDMSGSTIDDPLSDTYSKLGCSIS PLEKNSDDYEMIVKYLEKTYEPVKVGDCEYGVSVENIFAVEPSAGPSYEDIVKMPNKVLLWCGSRSSNLLRHLHKGFLPA ICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTTPLEEKKLGVKGLGKKKTDE SEHFVWKDDIKVPCGRIIPSEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKGTVMDTAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 457 | 457 | 9.4E-277 | – | |
| Gene3D | 1 | 86 | 86 | 5.0E-14 | ||
| SMART | 1 | 65 | 65 | 3.0E-5 | ||
| Pfam | 1 | 60 | 60 | 1.8E-6 | ||
| SUPERFAMILY | 1 | 76 | 76 | 1.11E-12 | ||
| PANTHER | 1 | 457 | 457 | 9.4E-277 | – | |
| CDD | 98 | 449 | 352 | 2.77607E-118 | – | |
| ProSiteProfiles | 98 | 217 | 120 | 19.349 | ||
| SUPERFAMILY | 98 | 236 | 139 | 2.09E-30 | ||
| Pfam | 99 | 232 | 134 | 2.2E-19 | ||
| Gene3D | 101 | 449 | 349 | 4.7E-76 | – | |
| Gene3D | 114 | 223 | 110 | 4.7E-76 | ||
| Coils | 142 | 162 | 21 | - | – | |
| ProSiteProfiles | 226 | 457 | 232 | 68.326 | ||
| SUPERFAMILY | 235 | 452 | 218 | 2.88E-49 | – | |
| Pfam | 246 | 449 | 204 | 2.1E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | NAD+ ADP-ribosyltransferase activity | Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor. | ||
| Biological process | Protein ADP-ribosylation | The transfer, from NAD, of ADP-ribose to protein amino acids. |
Expression pattern of LotjaGi3g1v0478100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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