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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0480000 |
| Transcript ID | LotjaGi3g1v0480000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT2G27760.1 tRNAisopentenyltransferase 2; Swiss-Prot: sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2; TrEMBL-Plants: tr|I3SM43|I3SM43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89707484..89712192) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTAGGTGATCCATTTTATGTACTTTATCCTCATTTACATGATTTAAGTGCATTGAAGAAAAAATCTTGATGTAAGT GCATAAAAAACAGGCCCAATAGTAATACTATTGCGATTTTGAAAAAAAAAATGTATTACTATAGTCAGCGAGTAGCGATG AGCGAAAGAGAGTGAAAGAAAGAAGAAGCGATGGCGACGGAGGACACTGTATCATCAAACCCTAACCATGGAGAAAAACG ACCAAAAGTGGTGGTTATAACAGGCCCCACCGGTTCCGGGAAGTCGAGGCTCGCCGTCGATTTAGCCTCCCACTTCCCCG TCGAAGTCATCAACGCCGATTCCATGCAGGTCTACAGTGGTCTCGATGTTCTCACCAACAAAATCCCCATATCCGAGCAA AACGGTACCACCCTACTCTCCCCTCAACCTCTTCCATTTTCTCAAAATCAATCTCACTTCGTTCGTCGTTGTTGCAGGAG TGCCGCACCATCTCCTCGGAACCGTATCCCCAACCGTCGAATTCACCGCCAAAACCTTTCGCGATTCTGCTATTCCTGTA ACTCTCAAACCTGATCAAAGATTTTTCTGAATTTTTTCGGTATTTTAGTTAATATTTTTTTTGTTTTCGTATTTTTTCAG ATCATTGATGCTATATTGGCTCGCAACCACTTACCAGTTATAGTTGGGGGCACCAATTACTATATCCAGGTGAGGGTTTT GAATCATGGTGATAGCATCTATGTGCATTCCTCCATGTTCTTCCAGTTTTTTAATCATGCACACATAATGTACTTTCTCT GTTTCTTAGGGTGTGTTTGGAAAATATTATTCGAGATTATGTTAATAGTGTAGCCACTTGGTTAAGCTTATGAAAGTTAC ATATACCCATAAGCTTTTTAAAGTTAATTTTGATAAGGAAGAGTGCTGTTTATTTTGATATGAAATGTAAGAATTAAAAT TTACGCAGTACATGGTCTTTGTTTTCCGGCAATTGGAATTTTAATGCTTAACCATTTTTTCCCCCGCAAATAACCAATGC TTTGATGCCATCTGATTATTCTTACATTTCGTTGATCCGGCCTGCTATTCGTATTAAATAGCAATGCTGTTTGATTGCTT CTCTGATAAATTTATGAATAAGCGCTTGTACGGTTACACTATCTGTAGTCTTCTCTGCTTCTGAGTTCATTTCAACAAAT TTCTGAATAAATGCTTATGCAATAAGTGCTTATTGATATAACCTCTTAAGCTATTTAATTATTTATTCGAATGCATCCTT ACTCTGATTGTATGTTTCAAGGCGTTGCTGGGGCTTTCGTTTTATTTCTCATATTTTTGCTCTATTTTCTGTTATGTTCT TCAGGCTCTTGTGAGTCAGTTTCTCTTAGATGAATCGATGGATGATATGAATGATAGCTGTTGTTTGGGTGATCTACCTG GTAAATTGTTATTTGGTTCTCTGATTTTATTTTTTCTCCTGTTCGAGTAATTTTTACTTAGCATCTTATATTGCTTATAA TTATGTAGGTGTCATGTGGTCTGATAACAGCTTCATTGCGGAAAGTGACAGTTCAAACGATTTTAATTATGATCTACTTA AAGATATTGATCCAATTGCAGCAAATAGAATCCATCCAAATAATCATAGAAAGGTTGGAGTTTAATTTCATTATTTATTA TTCATGTGACATGTACATAGGGCCATCTTTCTTATACAGTTAAGACTTGCTGTAAGAGTTAAATATATGCAACAATTCCG TGATTTATTCCTGTTTTAGTTATGCGCATGACACCGTTTTCTGTGTTTGGGCGAGGGATGAAAAGTGAGCGGGTTACTTT TATATGTGACAATGATTACCAACTTAACCATTAGTATTTAGTAACCCTCTCCTTCACACACACACATAGAAAGAATTTAA AAGTTCTGGGACGCTGTAATGCTGTATCTCCACTAGAAGCATTGCCCTTTTTAATTAATTTGTAAACTTTTAAATTATAT GAAATGCTTAACTGGGGATGCACTTGTTTTTTTTTTGTTTTAGATAAATCAATATATTAGTTTGTACGCTCGCACTGGTG TTCTTCCGAGCAAAGTTTTTCAAGGAGAGGCGGCAGAGGTTTGTAATCTTTGACATTCATGGACTTATTGCAAATTCAAC ATAATCTCTTTTCCCTTAGTCCATGTGACTTATCATGCTTTTCCTCAATTTATGGTCTTCATAATTGATTGCTTCCACAA TTCACTAATCACTCTTATGTGGATTACTTATTGACAAACAACACAAATAGAAGAGGGATGTTCAATTGTTCATGTGTTTT ATTGCAACATGTCTGTTAATTCTCTCCTTTTTTTTCTTGTGTTTCAAATGATATTGGTCTTGCTTGTGGCAGGGCAGAAG TGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGCGTGGACGCATCTCTCCCTGTATTGGACAGATATGT AGAGCAGAGAGTAGATTGCATGATGGATGCTGGATTACTCAATGAAGTCTATGACATTTACAATTTGAATGCAGATTATA GCAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTTTGTTCTCAAGGACATCTATGAA AGAGAGAAGGAGTTGACCGGAGGATCCACCATAGAGAAGCGTGAGACATTGTCTAATGGTAATCTGATGGAGTGGTTAAG ATCTTACTCTGATGCTAAATCCATGATTCTTATGGAAGAAGCAATTGAAAAAGTGAAGGTTAATACCCGGAGACTTGTTC GCCGTCAGGTAAAAATAATTTATCATTTGTTCGTGACTTTCTTGAGCATTCCAAACAGAACATTTATTTTGGCCAGATAT GCAAGCTAGCTGAAAATTTGTCATTTTTCTGATTAATCTTCTCACAACATGTATATAAAATTAGCCATGAGATGCTTCAT ATGTATTCTGATAGAATTGATGAAATAACTTCTGTTAGTTGTGAACAGCGTTTATACATCAAACTGATGGAACTCCATTC TCTGTACAATATCAAGATATATTTGTTTTAGCCGTAAGATTTCTAGCATTTTGCTATAGACCATGTTAACTTGAATAGAC AATAATATAGTTGATCAAATATTCATTGATGACAATTGCTAAGCCCTTCTCTACTTAGTAGATTGTAATCCAGAAATTTA AAGTCAAAGATTTATGTGGAAGCTTTGTTCATTACAGAAGAGGATGCTCAATCGACTGCAAATGCTGTTTGGTTGGAACA TACACTCTGTTGATTCCACAGAATCAATATCAAGTAAGCTGTCTTAGACTCTTAGTCTTGTTCCTGTATATTTGTTGCGT TTATTGTAATCAATTAACTTTTTGAAGTATCCTGTAATTAATAATTATATTGATTTGGATATTTTTTTGTAGGTAAATCA GATGATGTTTGGAAAGGTCAAGTGGTTGAATCTAGCATGAAGATAGTTAACTCATTCCTGAGTGAGAATGGAAGCATGTC ATCCACCTGTAGCATGTCAAATGACACTGGGATGAAAATAGTCCAAAGGGACCTCTGGACTCAATACACATGCAAGGTCT GCTATGATTTAGAATTCACTTGGCAGGATACATTGGCCCCTTTCTGATCACAAAAGAAAAATTCTGCATTGTTCTGATTA CTGACCTTTGACCACCCTTCATTCACACCTTTATTCAAGAAAGGGGAAATGCCAGAATGGGGTGATTTTATGGATAGATC TAGAGCGCAACACAATGCTTTTAGTCTTGGTGCAATTCTGCAACAAAAATTGCAAACAATTCACTAAAACATTTAAATGG AGACAATTTTTTAATGGTTTATTTATATATACTAGCAGTGTTAACATTTACATGGATACTTGATCTTATCTTGTCATGTT TCTTTTTTGCTATTTTCTTATTTTAAATTATTAGTAATGTGGCAAAAATGATGAATTCTGGTTGGATAACCTTTGTGTTT GACAGGCCTGTGGTGATCGGGTGCTTAGAGGATTACATGAATGGGAGCAACACAGACAAGGCCGTGGGCATCGAAAACGT ATCTCTAGTCTCAAGAGGAAGTCACAAGGTCTTAATTTCTATGAAACAGAAGCGGGAGCATTCTAAGGGGATGAATAGCT GGATACCGCTGGATACCTCACTCTAGTAGTAATGAAAGATTTGGTTGATGCTATTATTGATGGCTTGTCATCGAGTGAAT TATTTTTGTATGATTTTTGCTTGCATGTGTTGGAATTAATTTTTGAGGAGTGCTAGCAATAGTCTCATTAATTTGTTGAA ATTCACCCGAGTCTCATATTTTTAGTGGACTACACTTGAATTTTAACTAATTAATGAAGAGTGTTGAATAGTGTTGCTAG TATTTTTCTTGATTTTTTGTTAGAGTTAGGTTTTGGGTCCTTTGGATGTCATTATAGTTCCGAAATCATTTCTGAATTGT TGTAATTGCTGCGTTGACCCTTGCAGTTTTAATTTTATGGGTGATCCTTGCGGTTGCAGACTAGCTTTGCCTTTTTATAA CAATTTCTAATGAATATCGAACACGTTCTTAAGAATGTCCAATGAAAATGAGAGATCCTTATTATTGAGATAAAAAATGG TATCATTCCAACCATGTTCAATTCAACCTTCAAGTCCAAGACATGAAATTATAACCAAGCATGTTTATT
CDS sequence (LotjaGi3g1v0480000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGGAGGACACTGTATCATCAAACCCTAACCATGGAGAAAAACGACCAAAAGTGGTGGTTATAACAGGCCCCAC CGGTTCCGGGAAGTCGAGGCTCGCCGTCGATTTAGCCTCCCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAGG TCTACAGTGGTCTCGATGTTCTCACCAACAAAATCCCCATATCCGAGCAAAACGGAGTGCCGCACCATCTCCTCGGAACC GTATCCCCAACCGTCGAATTCACCGCCAAAACCTTTCGCGATTCTGCTATTCCTATCATTGATGCTATATTGGCTCGCAA CCACTTACCAGTTATAGTTGGGGGCACCAATTACTATATCCAGGCTCTTGTGAGTCAGTTTCTCTTAGATGAATCGATGG ATGATATGAATGATAGCTGTTGTTTGGGTGATCTACCTGGTGTCATGTGGTCTGATAACAGCTTCATTGCGGAAAGTGAC AGTTCAAACGATTTTAATTATGATCTACTTAAAGATATTGATCCAATTGCAGCAAATAGAATCCATCCAAATAATCATAG AAAGATAAATCAATATATTAGTTTGTACGCTCGCACTGGTGTTCTTCCGAGCAAAGTTTTTCAAGGAGAGGCGGCAGAGA AGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGCGTGGACGCATCTCTCCCTGTATTGGACAGATAT GTAGAGCAGAGAGTAGATTGCATGATGGATGCTGGATTACTCAATGAAGTCTATGACATTTACAATTTGAATGCAGATTA TAGCAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTTTGTTCTCAAGGACATCTATG AAAGAGAGAAGGAGTTGACCGGAGGATCCACCATAGAGAAGCGTGAGACATTGTCTAATGGTAATCTGATGGAGTGGTTA AGATCTTACTCTGATGCTAAATCCATGATTCTTATGGAAGAAGCAATTGAAAAAGTGAAGGTTAATACCCGGAGACTTGT TCGCCGTCAGAAGAGGATGCTCAATCGACTGCAAATGCTGTTTGGTTGGAACATACACTCTGTTGATTCCACAGAATCAA TATCAAGTAAATCAGATGATGTTTGGAAAGGTCAAGTGGTTGAATCTAGCATGAAGATAGTTAACTCATTCCTGAGTGAG AATGGAAGCATGTCATCCACCTGTAGCATGTCAAATGACACTGGGATGAAAATAGTCCAAAGGGACCTCTGGACTCAATA CACATGCAAGGCCTGTGGTGATCGGGTGCTTAGAGGATTACATGAATGGGAGCAACACAGACAAGGCCGTGGGCATCGAA AACGTATCTCTAGTCTCAAGAGGAAGTCACAAGGTCTTAATTTCTATGAAACAGAAGCGGGAGCATTCTAA
Protein sequence (LotjaGi3g1v0480000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEDTVSSNPNHGEKRPKVVVITGPTGSGKSRLAVDLASHFPVEVINADSMQVYSGLDVLTNKIPISEQNGVPHHLLGT VSPTVEFTAKTFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSQFLLDESMDDMNDSCCLGDLPGVMWSDNSFIAESD SSNDFNYDLLKDIDPIAANRIHPNNHRKINQYISLYARTGVLPSKVFQGEAAEKWGQVDNLRYDCCFICVDASLPVLDRY VEQRVDCMMDAGLLNEVYDIYNLNADYSRGLRQAIGVREFEPLLRTFVLKDIYEREKELTGGSTIEKRETLSNGNLMEWL RSYSDAKSMILMEEAIEKVKVNTRRLVRRQKRMLNRLQMLFGWNIHSVDSTESISSKSDDVWKGQVVESSMKIVNSFLSE NGSMSSTCSMSNDTGMKIVQRDLWTQYTCKACGDRVLRGLHEWEQHRQGRGHRKRISSLKRKSQGLNFYETEAGAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 13 | 151 | 139 | 4.0E-48 | – | |
| PANTHER | 15 | 460 | 446 | 2.2E-212 | ||
| PANTHER | 15 | 460 | 446 | 2.2E-212 | – | |
| SUPERFAMILY | 16 | 265 | 250 | 7.25E-13 | ||
| Hamap | 20 | 376 | 357 | 20.266 | ||
| TIGRFAM | 20 | 298 | 279 | 2.0E-56 | ||
| Pfam | 53 | 355 | 303 | 4.7E-49 | ||
| Gene3D | 152 | 211 | 60 | 2.4E-11 | – | |
| Gene3D | 235 | 363 | 129 | 9.2E-27 | – | |
| Gene3D | 422 | 468 | 47 | 1.4E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi3g1v0480000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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