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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0480000 |
| Transcript ID | LotjaGi3g1v0480000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT2G27760.1 tRNAisopentenyltransferase 2; Swiss-Prot: sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2; TrEMBL-Plants: tr|I3SM43|I3SM43_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0480000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89707558..89712121) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGTGCATAAAAAACAGGCCCAATAGTAATACTATTGCGATTTTGAAAAAAAAAATGTATTACTATAGTCAGCGAGTA GCGATGAGCGAAAGAGAGTGAAAGAAAGAAGAAGCGATGGCGACGGAGGACACTGTATCATCAAACCCTAACCATGGAGA AAAACGACCAAAAGTGGTGGTTATAACAGGCCCCACCGGTTCCGGGAAGTCGAGGCTCGCCGTCGATTTAGCCTCCCACT TCCCCGTCGAAGTCATCAACGCCGATTCCATGCAGGTCTACAGTGGTCTCGATGTTCTCACCAACAAAATCCCCATATCC GAGCAAAACGGTACCACCCTACTCTCCCCTCAACCTCTTCCATTTTCTCAAAATCAATCTCACTTCGTTCGTCGTTGTTG CAGGAGTGCCGCACCATCTCCTCGGAACCGTATCCCCAACCGTCGAATTCACCGCCAAAACCTTTCGCGATTCTGCTATT CCTGTAACTCTCAAACCTGATCAAAGATTTTTCTGAATTTTTTCGGTATTTTAGTTAATATTTTTTTTGTTTTCGTATTT TTTCAGATCATTGATGCTATATTGGCTCGCAACCACTTACCAGTTATAGTTGGGGGCACCAATTACTATATCCAGGTGAG GGTTTTGAATCATGGTGATAGCATCTATGTGCATTCCTCCATGTTCTTCCAGTTTTTTAATCATGCACACATAATGTACT TTCTCTGTTTCTTAGGGTGTGTTTGGAAAATATTATTCGAGATTATGTTAATAGTGTAGCCACTTGGTTAAGCTTATGAA AGTTACATATACCCATAAGCTTTTTAAAGTTAATTTTGATAAGGAAGAGTGCTGTTTATTTTGATATGAAATGTAAGAAT TAAAATTTACGCAGTACATGGTCTTTGTTTTCCGGCAATTGGAATTTTAATGCTTAACCATTTTTTCCCCCGCAAATAAC CAATGCTTTGATGCCATCTGATTATTCTTACATTTCGTTGATCCGGCCTGCTATTCGTATTAAATAGCAATGCTGTTTGA TTGCTTCTCTGATAAATTTATGAATAAGCGCTTGTACGGTTACACTATCTGTAGTCTTCTCTGCTTCTGAGTTCATTTCA ACAAATTTCTGAATAAATGCTTATGCAATAAGTGCTTATTGATATAACCTCTTAAGCTATTTAATTATTTATTCGAATGC ATCCTTACTCTGATTGTATGTTTCAAGGCGTTGCTGGGGCTTTCGTTTTATTTCTCATATTTTTGCTCTATTTTCTGTTA TGTTCTTCAGGCTCTTGTGAGTCAGTTTCTCTTAGATGAATCGATGGATGATATGAATGATAGCTGTTGTTTGGGTGATC TACCTGGTAAATTGTTATTTGGTTCTCTGATTTTATTTTTTCTCCTGTTCGAGTAATTTTTACTTAGCATCTTATATTGC TTATAATTATGTAGGTGTCATGTGGTCTGATAACAGCTTCATTGCGGAAAGTGACAGTTCAAACGATTTTAATTATGATC TACTTAAAGATATTGATCCAATTGCAGCAAATAGAATCCATCCAAATAATCATAGAAAGGTTGGAGTTTAATTTCATTAT TTATTATTCATGTGACATGTACATAGGGCCATCTTTCTTATACAGTTAAGACTTGCTGTAAGAGTTAAATATATGCAACA ATTCCGTGATTTATTCCTGTTTTAGTTATGCGCATGACACCGTTTTCTGTGTTTGGGCGAGGGATGAAAAGTGAGCGGGT TACTTTTATATGTGACAATGATTACCAACTTAACCATTAGTATTTAGTAACCCTCTCCTTCACACACACACATAGAAAGA ATTTAAAAGTTCTGGGACGCTGTAATGCTGTATCTCCACTAGAAGCATTGCCCTTTTTAATTAATTTGTAAACTTTTAAA TTATATGAAATGCTTAACTGGGGATGCACTTGTTTTTTTTTTGTTTTAGATAAATCAATATATTAGTTTGTACGCTCGCA CTGGTGTTCTTCCGAGCAAAGTTTTTCAAGGAGAGGCGGCAGAGGTTTGTAATCTTTGACATTCATGGACTTATTGCAAA TTCAACATAATCTCTTTTCCCTTAGTCCATGTGACTTATCATGCTTTTCCTCAATTTATGGTCTTCATAATTGATTGCTT CCACAATTCACTAATCACTCTTATGTGGATTACTTATTGACAAACAACACAAATAGAAGAGGGATGTTCAATTGTTCATG TGTTTTATTGCAACATGTCTGTTAATTCTCTCCTTTTTTTTCTTGTGTTTCAAATGATATTGGTCTTGCTTGTGGCAGGG CAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGCGTGGACGCATCTCTCCCTGTATTGGACAG ATATGTAGAGCAGAGAGTAGATTGCATGATGGATGCTGGATTACTCAATGAAGTCTATGACATTTACAATTTGAATGCAG ATTATAGCAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTTTGTTCTCAAGGACATC TATGAAAGAGAGAAGGAGTTGACCGGAGGATCCACCATAGAGAAGCGTGAGACATTGTCTAATGGTAATCTGATGGAGTG GTTAAGATCTTACTCTGATGCTAAATCCATGATTCTTATGGAAGAAGCAATTGAAAAAGTGAAGGTTAATACCCGGAGAC TTGTTCGCCGTCAGGTAAAAATAATTTATCATTTGTTCGTGACTTTCTTGAGCATTCCAAACAGAACATTTATTTTGGCC AGATATGCAAGCTAGCTGAAAATTTGTCATTTTTCTGATTAATCTTCTCACAACATGTATATAAAATTAGCCATGAGATG CTTCATATGTATTCTGATAGAATTGATGAAATAACTTCTGTTAGTTGTGAACAGCGTTTATACATCAAACTGATGGAACT CCATTCTCTGTACAATATCAAGATATATTTGTTTTAGCCGTAAGATTTCTAGCATTTTGCTATAGACCATGTTAACTTGA ATAGACAATAATATAGTTGATCAAATATTCATTGATGACAATTGCTAAGCCCTTCTCTACTTAGTAGATTGTAATCCAGA AATTTAAAGTCAAAGATTTATGTGGAAGCTTTGTTCATTACAGAAGAGGATGCTCAATCGACTGCAAATGCTGTTTGGTT GGAACATACACTCTGTTGATTCCACAGAATCAATATCAAGTAAGCTGTCTTAGACTCTTAGTCTTGTTCCTGTATATTTG TTGCGTTTATTGTAATCAATTAACTTTTTGAAGTATCCTGTAATTAATAATTATATTGATTTGGATATTTTTTTGTAGGT AAATCAGATGATGTTTGGAAAGGTCAAGTGGTTGAATCTAGCATGAAGATAGTTAACTCATTCCTGAGTGAGAATGGAAG CATGTCATCCACCTGTAGCATGTCAAATGACACTGGGATGAAAATAGTCCAAAGGGACCTCTGGACTCAATACACATGCA AGGTCTGCTATGATTTAGAATTCACTTGGCAGGATACATTGGCCCCTTTCTGATCACAAAAGAAAAATTCTGCATTGTTC TGATTACTGACCTTTGACCACCCTTCATTCACACCTTTATTCAAGAAAGGGGAAATGCCAGAATGGGGTGATTTTATGGA TAGATCTAGAGCGCAACACAATGCTTTTAGTCTTGGTGCAATTCTGCAACAAAAATTGCAAACAATTCACTAAAACATTT AAATGGAGACAATTTTTTAATGGTTTATTTATATATACTAGCAGTGTTAACATTTACATGGATACTTGATCTTATCTTGT CATGTTTCTTTTTTGCTATTTTCTTATTTTAAATTATTAGTAATGTGGCAAAAATGATGAATTCTGGTTGGATAACCTTT GTGTTTGACAGGCCTGTGGTGATCGGGTGCTTAGAGGATTACATGAATGGGAGCAACACAGACAAGGCCGTGGGCATCGA AAACGTATCTCTAGTCTCAAGAGGAAGTCACAAGGTCTTAATTTCTATGAAACAGAAGCGGGAGCATTCTAAGGGGATGA ATAGCTGGATACCGCTGGATACCTCACTCTAGTAGTAATGAAAGATTTGGTTGATGCTATTATTGATGGCTTGTCATCGA GTGAATTATTTTTGTATGATTTTTGCTTGCATGTGTTGGAATTAATTTTTGAGGAGTGCTAGCAATAGTCTCATTAATTT GTTGAAATTCACCCGAGTCTCATATTTTTAGTGGACTACACTTGAATTTTAACTAATTAATGAAGAGTGTTGAATAGTGT TGCTAGTATTTTTCTTGATTTTTTGTTAGAGTTAGGTTTTGGGTCCTTTGGATGTCATTATAGTTCCGAAATCATTTCTG AATTGTTGTAATTGCTGCGTTGACCCTTGCAGTTTTAATTTTATGGGTGATCCTTGCGGTTGCAGACTAGCTTTGCCTTT TTATAACAATTTCTAATGAATATCGAACACGTTCTTAAGAATGTCCAATGAAAATGAGAGATCCTTATTATTGAGATAAA AAAT
CDS sequence (LotjaGi3g1v0480000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGGAGGACACTGTATCATCAAACCCTAACCATGGAGAAAAACGACCAAAAGTGGTGGTTATAACAGGCCCCAC CGGTTCCGGGAAGTCGAGGCTCGCCGTCGATTTAGCCTCCCACTTCCCCGTCGAAGTCATCAACGCCGATTCCATGCAGG TCTACAGTGGTCTCGATGTTCTCACCAACAAAATCCCCATATCCGAGCAAAACGGAGTGCCGCACCATCTCCTCGGAACC GTATCCCCAACCGTCGAATTCACCGCCAAAACCTTTCGCGATTCTGCTATTCCTATCATTGATGCTATATTGGCTCGCAA CCACTTACCAGTTATAGTTGGGGGCACCAATTACTATATCCAGGCTCTTGTGAGTCAGTTTCTCTTAGATGAATCGATGG ATGATATGAATGATAGCTGTTGTTTGGGTGATCTACCTGGTGTCATGTGGTCTGATAACAGCTTCATTGCGGAAAGTGAC AGTTCAAACGATTTTAATTATGATCTACTTAAAGATATTGATCCAATTGCAGCAAATAGAATCCATCCAAATAATCATAG AAAGATAAATCAATATATTAGTTTGTACGCTCGCACTGGTGTTCTTCCGAGCAAAGTTTTTCAAGGAGAGGCGGCAGAGG GCAGAAGTGGGGTCAAGTTGATAACTTAA
Protein sequence (LotjaGi3g1v0480000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEDTVSSNPNHGEKRPKVVVITGPTGSGKSRLAVDLASHFPVEVINADSMQVYSGLDVLTNKIPISEQNGVPHHLLGT VSPTVEFTAKTFRDSAIPIIDAILARNHLPVIVGGTNYYIQALVSQFLLDESMDDMNDSCCLGDLPGVMWSDNSFIAESD SSNDFNYDLLKDIDPIAANRIHPNNHRKINQYISLYARTGVLPSKVFQGEAAEGRSGVKLIT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 15 | 216 | 202 | 1.5E-104 | – | |
| PANTHER | 15 | 216 | 202 | 1.5E-104 | ||
| Gene3D | 18 | 142 | 125 | 2.3E-49 | – | |
| SUPERFAMILY | 18 | 127 | 110 | 4.49E-12 | ||
| TIGRFAM | 20 | 211 | 192 | 2.6E-45 | ||
| Pfam | 53 | 204 | 152 | 2.1E-32 | ||
| Gene3D | 149 | 211 | 63 | 7.2E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi3g1v0480000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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