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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487600 |
| Transcript ID | LotjaGi3g1v0487600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High-affinity nitrate transporter 2.2; TAIR: AT5G60770.1 nitrate transporter 2.4; Swiss-Prot: sp|Q9FJH8|NRT24_ARATH High affinity nitrate transporter 2.4; TrEMBL-Plants: tr|Q9ARC5|Q9ARC5_LOTJA Membrane transporter; Found in the gene: LotjaGi3g1v0487600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90521978..90524577) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACCCTCATTGCTTCATCATTCACAACTTCATCAACTGCTCCCTTTCTTTCTCTGTTGCATGTTCTGTTTCTGAAGT ACTTTAATTATTACTTCACTCAACAACATTCAACAATGGTTGAGATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTA ACAGGAAGGGAGCAAACCTTCATAGCCACAGTTAATTCCCCATCTGTCCCAACAGACACCACAGCCAAATTCGATTTACC TGTTGATTCAGAACACAAAGCCAAAGTTTTCAAACTGTTCTCATTAGCCAATCCTCACATGAGAACCTTCCACTTATCAT GGATTTCCTTCTTCACCTGTTTTGTCTCTACCTTTGCAGCAGCCCCTCTTGTCCCCATCATCCGAGACAACCTCAATCTC ACCAAAAGCGACATCGGCAACGCCGGTGTCGCTTCTGTCTCCGGCAGCATTTTCTCCAGGCTCACTATGGGTGTAATTTG TGACCTCTTAGGCCCGCGTTACGGCTGCGCCTTCTTGATCATGCTGTCTGCACCAACTGTGTTCTGCATGTCATTTGTGA ATGATGCTGCAGGCTACATTGTGGTTCGGTTCATGATCGGGTTCTCATTGGCCACGTTTGTTTCGTGCCAGTACTGGATG AGCACCATGTTTAACACTAAGATTATTGGGCTTGTTAATGGAACTGCAGCTGGGTGGGGTAATATGGGTGGTGGGGCCAC TCAGCTCATCATGCCTATTGTCTATGAATTGATCAGGAGAGCGGGGTCCACTCCCTTCACTGCTTGGAGGATTGCCTTCT TCATCCCTGGTTTCATGCATGTATTCATGGGGATCCTTGTCTTAACCCTTGGCCAAGACTTGCCTGATGGCAACCTCAGT GCCCTCCAGAAGAAGGGTGATGTTGCTAAAGACAAATTCTCCAAGGTAATTGTCTACTTCTTAATTGCGGCTGCGCTTGC CGCAGCATCACAAAATTTCAAGCAAAACAAATGCGGGTTGATGCCACTGCAATTACAGTCCCAATGTCGATGCGATGACT CCATAATCCGTTATTTCGGCCTCAATTGAGATTGCGGACCGCAATTTAAAAACTATCATTTACATACACTTTTAATTAGT GCTCTTATGACTAATTAATTTAATTGCACTATTGATTTTGTGTTCAGGTGTTATGGTATGCCATAACAAATTACAGGACA TGGATCTTTGCACTTCTCTATGGATACTCTATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGA CAGGTTAGTTTAGCTCAAAACCTGTTTGATAAAAAGACATAAGCCTTCATTTCAATTTTTATTAAAAAAATTCATGGACT AATTAATTAACTAATTTGTACAAATTAAACAGGTTTAATCTGAAGCTGCACACAGCTGGAATCATAGCTGCTTCATTTGG AATGGCAAATCTTGTTGCTCGCCCCTTTGGCGGATATGTATCTGATGTTGCAGCGCGGTTGTTTGGTATGAGAGGAAGAC TGTGGACCCTGTGGATCCTCCAAACACTTGGAGGAGTGTTCTGTATATGGCTTGGGCGTGCGAATTCGCTTCCAATTGCT GTGTTGGCCATGATCCTTTTCTCAGTTGGAGCTCAAGCTGCTTGTGGTGCAACATTTGGAATCATTCCTTTCATCTCAAG AAGGTCTTTGGGGATCATTTCAGGTCTAACCGGTGCAGGTGGAAACTTCGGTTCTGGTTTGACACAATTGGTATTCTTTT CAACTTCAAGATTCTCCACAGCTGCAGGATTGTCATGGATGGGTGTGATGATTGTGGGATGCACTCTCCCCGTGACACTT GTTCACTTCCCACAGTGGGGAAGCATGTTCCTCCCTCCTTCAAAAGACATCCACAAGTCCAGTGAAGAACACTATTACAC TGCTGAATGGGACGAGGAAGAGAGGAAGAAGGGGTTACACTCACAAAGTCTCAAGTTTGCAGAGAATAGTCGCTCTGAGA GAGGCAAGCGTATTTCCTCTGCACCAACACCTCCAAACACAACCCCTACGCATGTCTAGTTTTAAGGCCACTTCATCTAT CAAGCGGATTCTCAAGAAAAAGTCATTTTCATGGCTCTGTTGTAGCTTCTGCTACATGTGAAAACACCATAAATAATGAG TTAAAATGTTAATGGATTCCCTGGCTGAATAAGGTATCTTAAAACTGTAAAAGCTCTTGCGCTTAGAACTTTGGAGTATT GTTTTACACCATTCAAATTCCTAAATACATAGGATTTGGTGTATTTTTCTACATATATAAGGACATAATATGTGTATTGT GAGAGTTCTCACATGTTGGTTTTGCCATAGTAAAAAACCGCCACCATATTTTATGACTGAAACAAAATATGTATGTTGGC CGTTCATTTTCCAATAAGAAATTGGCTTAATTAAGTTTTTGTTCCTATGTCTGGTTTTCGTCCCTCGTCGGCGTAAGTAT GGGGCTGATTCCCAGTTTTTGTACAAATGTTTGTTCGGGTCCCTTCGGCCGCCTGGGTCAACGCTGGAGCTCCGGGAAAC CCATGTGGCATTGTCACGCCATTTAATTAATGAGCATTAG
CDS sequence (LotjaGi3g1v0487600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAGATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGAAGGGAGCAAACCTTCATAGCCACAGTTAA TTCCCCATCTGTCCCAACAGACACCACAGCCAAATTCGATTTACCTGTTGATTCAGAACACAAAGCCAAAGTTTTCAAAC TGTTCTCATTAGCCAATCCTCACATGAGAACCTTCCACTTATCATGGATTTCCTTCTTCACCTGTTTTGTCTCTACCTTT GCAGCAGCCCCTCTTGTCCCCATCATCCGAGACAACCTCAATCTCACCAAAAGCGACATCGGCAACGCCGGTGTCGCTTC TGTCTCCGGCAGCATTTTCTCCAGGCTCACTATGGGTGTAATTTGTGACCTCTTAGGCCCGCGTTACGGCTGCGCCTTCT TGATCATGCTGTCTGCACCAACTGTGTTCTGCATGTCATTTGTGAATGATGCTGCAGGCTACATTGTGGTTCGGTTCATG ATCGGGTTCTCATTGGCCACGTTTGTTTCGTGCCAGTACTGGATGAGCACCATGTTTAACACTAAGATTATTGGGCTTGT TAATGGAACTGCAGCTGGGTGGGGTAATATGGGTGGTGGGGCCACTCAGCTCATCATGCCTATTGTCTATGAATTGATCA GGAGAGCGGGGTCCACTCCCTTCACTGCTTGGAGGATTGCCTTCTTCATCCCTGGTTTCATGCATGTATTCATGGGGATC CTTGTCTTAACCCTTGGCCAAGACTTGCCTGATGGCAACCTCAGTGCCCTCCAGAAGAAGGGTGATGTTGCTAAAGACAA ATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATCTTTGCACTTCTCTATGGATACTCTATGGGAG TTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTGAAGCTGCACACAGCTGGAATCATA GCTGCTTCATTTGGAATGGCAAATCTTGTTGCTCGCCCCTTTGGCGGATATGTATCTGATGTTGCAGCGCGGTTGTTTGG TATGAGAGGAAGACTGTGGACCCTGTGGATCCTCCAAACACTTGGAGGAGTGTTCTGTATATGGCTTGGGCGTGCGAATT CGCTTCCAATTGCTGTGTTGGCCATGATCCTTTTCTCAGTTGGAGCTCAAGCTGCTTGTGGTGCAACATTTGGAATCATT CCTTTCATCTCAAGAAGGTCTTTGGGGATCATTTCAGGTCTAACCGGTGCAGGTGGAAACTTCGGTTCTGGTTTGACACA ATTGGTATTCTTTTCAACTTCAAGATTCTCCACAGCTGCAGGATTGTCATGGATGGGTGTGATGATTGTGGGATGCACTC TCCCCGTGACACTTGTTCACTTCCCACAGTGGGGAAGCATGTTCCTCCCTCCTTCAAAAGACATCCACAAGTCCAGTGAA GAACACTATTACACTGCTGAATGGGACGAGGAAGAGAGGAAGAAGGGGTTACACTCACAAAGTCTCAAGTTTGCAGAGAA TAGTCGCTCTGAGAGAGGCAAGCGTATTTCCTCTGCACCAACACCTCCAAACACAACCCCTACGCATGTCTAG
Protein sequence (LotjaGi3g1v0487600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEIEGSPGSSMHGVTGREQTFIATVNSPSVPTDTTAKFDLPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTF AAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFM IGFSLATFVSCQYWMSTMFNTKIIGLVNGTAAGWGNMGGGATQLIMPIVYELIRRAGSTPFTAWRIAFFIPGFMHVFMGI LVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGII AASFGMANLVARPFGGYVSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSVGAQAACGATFGII PFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSRFSTAAGLSWMGVMIVGCTLPVTLVHFPQWGSMFLPPSKDIHKSSE EHYYTAEWDEEERKKGLHSQSLKFAENSRSERGKRISSAPTPPNTTPTHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 529 | 529 | 0.0 | – | |
| PANTHER | 1 | 529 | 529 | 0.0 | – | |
| Phobius | 1 | 66 | 66 | - | – | |
| Gene3D | 47 | 246 | 200 | 2.8E-30 | – | |
| SUPERFAMILY | 59 | 459 | 401 | 5.1E-52 | ||
| ProSiteProfiles | 64 | 458 | 395 | 10.165 | ||
| CDD | 65 | 458 | 394 | 2.76705E-140 | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 67 | 89 | 23 | - | – | |
| Pfam | 69 | 425 | 357 | 1.4E-20 | ||
| Phobius | 90 | 100 | 11 | - | – | |
| Phobius | 101 | 122 | 22 | - | – | |
| Phobius | 123 | 128 | 6 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 129 | 148 | 20 | - | – | |
| Phobius | 149 | 153 | 5 | - | – | |
| Phobius | 154 | 174 | 21 | - | – | |
| TMHMM | 154 | 176 | 23 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| Phobius | 186 | 206 | 21 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 207 | 225 | 19 | - | – | |
| Phobius | 226 | 250 | 25 | - | – | |
| TMHMM | 226 | 245 | 20 | - | – | |
| Phobius | 251 | 270 | 20 | - | – | |
| Gene3D | 264 | 465 | 202 | 5.5E-28 | – | |
| Phobius | 271 | 290 | 20 | - | – | |
| TMHMM | 271 | 293 | 23 | - | – | |
| Phobius | 291 | 309 | 19 | - | – | |
| Phobius | 310 | 331 | 22 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 332 | 351 | 20 | - | – | |
| TMHMM | 351 | 370 | 20 | - | – | |
| Phobius | 352 | 371 | 20 | - | – | |
| Phobius | 372 | 376 | 5 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 377 | 403 | 27 | - | – | |
| Phobius | 404 | 409 | 6 | - | – | |
| TMHMM | 409 | 431 | 23 | - | – | |
| Phobius | 410 | 430 | 21 | - | – | |
| Phobius | 431 | 441 | 11 | - | – | |
| TMHMM | 438 | 460 | 23 | - | – | |
| Phobius | 442 | 461 | 20 | - | – | |
| Phobius | 462 | 530 | 69 | - | – | |
| MobiDBLite | 490 | 513 | 24 | - | – | |
| MobiDBLite | 490 | 530 | 41 | - | – | |
| MobiDBLite | 514 | 530 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0487600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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