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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0490100 |
| Transcript ID | LotjaGi3g1v0490100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G59600.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600; TrEMBL-Plants: tr|I1LJY8|I1LJY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0490100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90835634..90837818) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAATATTTTTCCTAATGTTAGCTCAAGTGGTAAAATATTTTATCTAATACTAACAACTAACATTTGCCTATAAAAAA ACATGTAAAAATATTACTTGACCAACTAAATACTAAGGATAATTTTACCTAATATTTATCTCATGTTGGCCCCAAATTAA TATTTTTTTTTCACATTGACTGAACACCAAATAAGTTTTACTTATATCCCCACTATTAAGTTACACTGTAGTGTGTACTC TGTATAATGCTATGCGTGCTGTGGCAAGAACGACAACATCTGTTACCATTCCCGCCAAAAATGTCCTCCTCAGCCACCGG TTTTTCCGATCAGAACCCGAATCCTATGCCAAACTCATCGAACTCTACGCTCACGATCGAGCGTTGCACCTCGGCAAGAA GCTCCACGCGCACCTCACCGTCACCGGCTTCACCTCCTTCAACACCATCGCTTCCAACCTCGTAGCCTTCTACGCGTGCT GCGGCCAACTCTCCCTTGCACGGAAACTGTTCGACAGAATTCCCACCACCAATGTCCGCCGTTGGATCGCGCTCATCAGC GCCTGCGCTCGCTGCGGCTTCCACCACCATGCCATCGCCGTGTTCTCCGAGATGCAAGCTATCCAAGCGCTGAAGCCCCA CAATGTTTTCGTCATTCCGAGCGTTCTCAAGGCTTGCGGCCATATCGGCGACCGAGTCGCCGGAGAGCAAGTGCATGGAT TGATTATGAAGTGTTCGTTTGAGCTTGATGCGTTTGTGTCCAGCGCGTTGATTGTTATGTACTCTAAGTGTGGTCGTGTT GAGGATGCGCGCAAGGTGTTTGATGGAATGGCTGTGAAGGACTTGGTTTCGATGAATGCTGTTGTTTCTGGGTATGCTCA ACAAGGGGCTCCGAATGAGGCGCTGGATTTGGTGGAAAGTATGAATTTGGTGGGGATGAGGCCAAATGTGGTAACGTGGA ATGCTTTGATATATGGGTTCTCGCATAAAGGTGATCGAGGAATGGTCTCGGTGATTTTTAACTTGATGATTGCAGCTGGG ATTGAGCCTGATGTGGTGTCGTGGACTTCTGTTATATCTGGTCTTGTGCAGAACTTTTGTATTGAGGAAGCATTTGGTAC CTTTAAGCAAATGTTGGGTCATGGATTCTGTCCAACTTCTGCTACTATCAGCACCCTTCTTCCTGCTTGTGCTACTGCAG CGAGGGTGAAGCTTGGAAAGGAGATTCATGGCTATGCTTTTGTGATTGGGGTGGAGGAAGATTTGTATGTAAGGAGTGCT CTGGTTGACATGTATGCTAAATGTGGGTTCATTTCTGAAGCGAGGACTCTGTTTCGCAAGATGCCGGAGAAGAACACGGT TACTTGGAACTCTATCATTTTTGGTTACGCGAATCATGGGTATTGCGAGGAAGCTATTGAGCTCTTCAATCAGATGGAAT TAGAAGGGGAAGCTAAATTGGATCACTTAACTTTCACGGCAGCTCTCACAGCATGCAGCCATGCTGGAGATATTGAACTT GGGCAGAGGCTGTTCGAGATCATGCAAGAAAAATACAGTATTGAGCCACGGCTGGAGCATTATGCATGCATGGTGGATCT GCTTGGTCGAGCGGGGAAGGTGGAAGATGCATATTGTATGATCAAGACCATGCCTGTTGAACCTGATTTGTTTGTTTGGG GTGCTTTACTGGCGGCTTGCAGGAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTAAGCATTTGTTGGAACTAGAG CCTGAGAGTGCTGGGAACCGTCTTCTGTTGTCCAGCCTGTATGCTGATTCTGGCAGATGGGGAAAGGTTGAGAAGATCAA GAAGATGCTGAAGAAGGGAAAACTCAGAAAACTTCAAGGATTGAGTTGGATAGATAATGTATAATAATATGGTAGGTAGC CAAGTAGGTAAATGATTCTTTCTGGCTGGAGGTCTCTTTGCACTTTGCTTCGTTTTTTGGGTTAGTCAGGTCATGGGTTT TTCTTCAAAAAGAAGGGGATGGCAAAACCTGTAGAAACAATTTGGGATATATATTGTTTTCTGTTCCTCATCAGTCATCA GTCAATAGTTCGGTAATCTTTTGACAAGTGAAATTGGGCATAAAGAAAATCTCAAGTGCGTTTGGATTCTTATTGAAATT AAAACTGATCTACATTAAACTCAAC
CDS sequence (LotjaGi3g1v0490100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGCTGTGGCAAGAACGACAACATCTGTTACCATTCCCGCCAAAAATGTCCTCCTCAGCCACCGGTTTTTCCGATC AGAACCCGAATCCTATGCCAAACTCATCGAACTCTACGCTCACGATCGAGCGTTGCACCTCGGCAAGAAGCTCCACGCGC ACCTCACCGTCACCGGCTTCACCTCCTTCAACACCATCGCTTCCAACCTCGTAGCCTTCTACGCGTGCTGCGGCCAACTC TCCCTTGCACGGAAACTGTTCGACAGAATTCCCACCACCAATGTCCGCCGTTGGATCGCGCTCATCAGCGCCTGCGCTCG CTGCGGCTTCCACCACCATGCCATCGCCGTGTTCTCCGAGATGCAAGCTATCCAAGCGCTGAAGCCCCACAATGTTTTCG TCATTCCGAGCGTTCTCAAGGCTTGCGGCCATATCGGCGACCGAGTCGCCGGAGAGCAAGTGCATGGATTGATTATGAAG TGTTCGTTTGAGCTTGATGCGTTTGTGTCCAGCGCGTTGATTGTTATGTACTCTAAGTGTGGTCGTGTTGAGGATGCGCG CAAGGTGTTTGATGGAATGGCTGTGAAGGACTTGGTTTCGATGAATGCTGTTGTTTCTGGGTATGCTCAACAAGGGGCTC CGAATGAGGCGCTGGATTTGGTGGAAAGTATGAATTTGGTGGGGATGAGGCCAAATGTGGTAACGTGGAATGCTTTGATA TATGGGTTCTCGCATAAAGGTGATCGAGGAATGGTCTCGGTGATTTTTAACTTGATGATTGCAGCTGGGATTGAGCCTGA TGTGGTGTCGTGGACTTCTGTTATATCTGGTCTTGTGCAGAACTTTTGTATTGAGGAAGCATTTGGTACCTTTAAGCAAA TGTTGGGTCATGGATTCTGTCCAACTTCTGCTACTATCAGCACCCTTCTTCCTGCTTGTGCTACTGCAGCGAGGGTGAAG CTTGGAAAGGAGATTCATGGCTATGCTTTTGTGATTGGGGTGGAGGAAGATTTGTATGTAAGGAGTGCTCTGGTTGACAT GTATGCTAAATGTGGGTTCATTTCTGAAGCGAGGACTCTGTTTCGCAAGATGCCGGAGAAGAACACGGTTACTTGGAACT CTATCATTTTTGGTTACGCGAATCATGGGTATTGCGAGGAAGCTATTGAGCTCTTCAATCAGATGGAATTAGAAGGGGAA GCTAAATTGGATCACTTAACTTTCACGGCAGCTCTCACAGCATGCAGCCATGCTGGAGATATTGAACTTGGGCAGAGGCT GTTCGAGATCATGCAAGAAAAATACAGTATTGAGCCACGGCTGGAGCATTATGCATGCATGGTGGATCTGCTTGGTCGAG CGGGGAAGGTGGAAGATGCATATTGTATGATCAAGACCATGCCTGTTGAACCTGATTTGTTTGTTTGGGGTGCTTTACTG GCGGCTTGCAGGAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTAAGCATTTGTTGGAACTAGAGCCTGAGAGTGC TGGGAACCGTCTTCTGTTGTCCAGCCTGTATGCTGATTCTGGCAGATGGGGAAAGGTTGAGAAGATCAAGAAGATGCTGA AGAAGGGAAAACTCAGAAAACTTCAAGGATTGAGTTGGATAGATAATGTATAA
Protein sequence (LotjaGi3g1v0490100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAVARTTTSVTIPAKNVLLSHRFFRSEPESYAKLIELYAHDRALHLGKKLHAHLTVTGFTSFNTIASNLVAFYACCGQL SLARKLFDRIPTTNVRRWIALISACARCGFHHHAIAVFSEMQAIQALKPHNVFVIPSVLKACGHIGDRVAGEQVHGLIMK CSFELDAFVSSALIVMYSKCGRVEDARKVFDGMAVKDLVSMNAVVSGYAQQGAPNEALDLVESMNLVGMRPNVVTWNALI YGFSHKGDRGMVSVIFNLMIAAGIEPDVVSWTSVISGLVQNFCIEEAFGTFKQMLGHGFCPTSATISTLLPACATAARVK LGKEIHGYAFVIGVEEDLYVRSALVDMYAKCGFISEARTLFRKMPEKNTVTWNSIIFGYANHGYCEEAIELFNQMELEGE AKLDHLTFTAALTACSHAGDIELGQRLFEIMQEKYSIEPRLEHYACMVDLLGRAGKVEDAYCMIKTMPVEPDLFVWGALL AACRNHGHVELAEVAAKHLLELEPESAGNRLLLSSLYADSGRWGKVEKIKKMLKKGKLRKLQGLSWIDNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 147 | 124 | 7.8E-109 | – | |
| ProSiteProfiles | 28 | 62 | 35 | 5.799 | ||
| ProSiteProfiles | 94 | 124 | 31 | 7.881 | ||
| Pfam | 98 | 122 | 25 | 9.3E-4 | ||
| Gene3D | 100 | 229 | 130 | 6.6E-25 | ||
| ProSiteProfiles | 131 | 165 | 35 | 5.163 | ||
| PANTHER | 136 | 268 | 133 | 7.8E-109 | – | |
| ProSiteProfiles | 166 | 196 | 31 | 8.407 | ||
| Pfam | 171 | 194 | 24 | 0.0043 | ||
| TIGRFAM | 172 | 197 | 26 | 0.0027 | ||
| ProSiteProfiles | 197 | 231 | 35 | 10.665 | ||
| Pfam | 199 | 224 | 26 | 0.0037 | ||
| Gene3D | 230 | 326 | 97 | 2.0E-22 | ||
| Pfam | 231 | 279 | 49 | 1.9E-10 | ||
| ProSiteProfiles | 232 | 266 | 35 | 10.216 | ||
| TIGRFAM | 234 | 268 | 35 | 7.9E-6 | ||
| ProSiteProfiles | 267 | 301 | 35 | 10.6 | ||
| PANTHER | 268 | 325 | 58 | 7.8E-109 | – | |
| TIGRFAM | 269 | 302 | 34 | 1.7E-6 | ||
| PANTHER | 320 | 532 | 213 | 7.8E-109 | – | |
| SUPERFAMILY | 336 | 507 | 172 | 2.33E-5 | ||
| ProSiteProfiles | 337 | 367 | 31 | 8.703 | ||
| Gene3D | 341 | 548 | 208 | 9.1E-39 | ||
| Pfam | 367 | 415 | 49 | 2.1E-9 | ||
| ProSiteProfiles | 368 | 402 | 35 | 10.972 | ||
| TIGRFAM | 370 | 399 | 30 | 6.2E-6 | ||
| ProSiteProfiles | 404 | 434 | 31 | 8.144 | ||
| ProSiteProfiles | 440 | 470 | 31 | 6.533 | ||
| Pfam | 444 | 467 | 24 | 0.56 | ||
| ProSiteProfiles | 472 | 506 | 35 | 6.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0490100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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