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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0490400 |
| Transcript ID | LotjaGi3g1v0490400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIA large subunit; TAIR: AT1G07480.1 Transcription factor IIA, alpha/beta subunit; Swiss-Prot: sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit; TrEMBL-Plants: tr|V7BZ67|V7BZ67_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0490400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90851729..90858908) extracted from Lotus japonicus Gifu genome v1.2.
GCACATGTCGCCACGTAGACCCGTGAATATAATCGGATGCAAACCTATTTATATTCCATCCTTTATTCTGCGTTTTCTGG TCCGCCCCTTCCCCATCTTCGCACTCTCCTTTTCTATCCCCTCATCATCACTGCAAAATCCTCCCCCCAAACCCTAATCA AACCACTGAACTCGCCGATTCCCAACCCACCGTCATGGCGGCTTCCACCACCAGCCAGGTCTACGTTCAGGTCATCGACG ACGTCGTCAACAAGGTTCGCGATGAGTTCGTCAACAACGCCGGTCCCGGCGACGAAGTCCTCAAGGAGCTTCAATCTGTA ATTTCCCACTCTCATTTCCCAAATTTATTATCATATCATGAAATTCATGTCGAAATTGATATAATCAATGACTCGGTTTG CATCAACTCTTCTCCGTTTTGAGAATCTAGGGCTTCGATCTGTGCATTTACGCGCTTTCCTTTCTGTCGAAAATCGTGAC AGTGCTGTGTTGAATTTTTGTCTTTTTTGATGATTTGTGTAGATTTGGGAATCGAAGATGATTCAAGCTGGTGTGTTTCT TGGTCCAATAGAAAGGTCTGGCACTGTTAAGCCAGTGCAAGGTGGTCCGATTACGCCGGTGCATGATCTTAATGTGCCTT ATACTGAGGAGTATGAAACCCCCACTGCTGAAATGCTTTTCCCCCCTGTGAGTTTTAGTCCTGAATTATCAATTTTTATA AGTTATCTCTGCCAGACTTGTTAATAGCACTATAGCGGCGCAATAGCCTACAGTGTAGCGCCCTAGGGGTTCACCGCTAC TCCACTATTCACCGCTATAGCGCCGCAATAGCGCTTGAAATAGCGTTTTTTGGGCTTGCCGCTATGCTATCCGCCATTAA CAACAATGATCTATGCTTTAACTTGTTTTAATGAATTTGAAATGTTGGATTGTTGATATGGGCTTTTGAATGTACAGACC CCGGCACAAACACCTATTCAAACCCCTTTGCCAGGAACTGTGGATAGCTCTATGTATAACATTCCTACTGGACCTAGTGA TTACCCATCTTCTGGGAATGATTCTGGAGCCAATGTGGAGATTAAAGGTGGAAGACCCGGTCTGTACATGGTAAATCATT TTGTGACTCACTGACTCCAATATAATGGATTGCTGGTATATTTTCTTCTTAATGTATCAAGTAGCTGTCTGGCTCAGTTG ATCGTCACGGTATTTTCCTGTTTAGATGTGTGTTTCTGTGTTTATTGATCTTGTATATTTAATCTTGTGCAGCAACCTCC TTCTCCATGGATGAACCCAAGGCCTTCTCTTGATGTCAATGTTGGTGAGTCCCATTTGAATTTAAAACATAAGTTTTGAA TAAAATGGCTTTGCAGTAATGACTGTGTCTATTACTTTAGCTTATGTGGAAGGGCGGGACGAGGCAGACAGAGGAAATCC CAATCAACCCCTGACACAGGTAAGCAACTAGGTGAAGTCTATTAGAAAAATTGTCTATTTTCAAATTTGAATGAACCTTA TGGTAGAGTTTATCTATGCCATTCCTTGGAATTATCTTGAATTTCCACTCTGACATGAAAAGAGGTAACACACTATCAAA GTAACATTTAGATATTATTGATTTTTGGGGAAACATCCAGGACTTCTTCACAATGTCCTCAGGGAAGCGAAAACGTGATG AAGTTGCTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGAGATGCCAGATCCCGGAATTTTGAA ATTGAAGTATGTTCTTTCTTCATATTGTCAATGTCAAGTTGATATTTTTTGAATTCATATTAGCATGATGCTTGCATATT GTTTGGAGTGGTTTTTTACATGATAAAATATTTTTCATCATTGTCACCCCTTATGTTTTTATTGTAAATGAGCTCATGGT ATATGACGGAAGGCCTTTCCTTCAGAAGGAGACGGCACGGGGATGTAAAGAGCTATGCTATGGGCTGATCTTTTCATACT GACTTCAAATCTATGGGCCTATCCTTTTTTTATCAATTTGTTTTAGGGGCCGGATAGAGAATGAAATGCAGAAAAGAGAA GAGTTTCATATAGGAATATAAGATATTTGCATGTTCTCTGTCAAAAGAAAAAGCTTGACTTTAAGGTTCACACAGTCTTA ATGTTGTCCCAGCTCGGGAAGTGGTGGGTGTGGTTGGGAGGGGATGGGGACATGTGGATCAAAGCAAGTCTGGCCATCTC TACCTGATATACATTGCATTTTTTGAAAAGTGGGCAAGATAATTATTCGACCAACTGTTGTAAAAATGGCTTTCATTTGA AAACATGTCAGATTGTGATTCTCAACTGCTGTAAGCGCTATCTCCCTGACTTGCAGCCTGTATATTTGCTTAGATGGCCA TGTTACCGTATAAGTCACCAGTGTTGTCAAATAGTAGATATCGCGGCGCCATAGCATAACGCTATGAGGGCTCACCTCTA CCCGCTATTTTATGCTATTTTCCGCTTTGAGGGATTGATATAGTGGATTTTTGGCTTTCCGCCATCCGCGATTAACAACA CTGGGTCACGGGCTTCTTTATCTGCCCAATATTGTAAATAGTTCTTTAGGGTCCTATGAATGTAGGGATTGCTAAACTCC TCCACGCTTTCTTAAGATTTGGAGGTTAGCAACCTTCACATTTTGTTTTTGACTAAAAACCAGATTTTCTATTTCTTAAA ACAGTATTACAGTAATGGATGGTCATGTCATTTTATTTTATTTTCCTTTCTGTACTGTAAGATGTCAGAAAGGAACAAAG CAATTAAATTATGAGAATGCAAAAGAAATAGAATCCTTCAGCTGGAGAGAAAGTTAATTGCTAGCCTAATTAGGTTAGAG TAAATCACGTTTTAAGACTTTAAATAATATTAGTGGAAAAAGTTTTAAAATTGAATGTTTTGAAAATATTTGGAAAAAAG TTAATGTACATGCATTTATTTGTCTGACAATTTGTTGAGGGAAATGTTTATTCAGTTACTGAACTGTGGAAAATGAAACT TTCAGCTGTATGGAGGGGGCATCTCCATTGGTGCAGGTCACCCTACTTCTAAAGAGAAAATGCCAGCACATTTGGAGAGG CCAGCTTCTCGGATTCCTCAACATGATGGACCAATTCCCTATGATGATGATGTGCTTTCTACCCCAAATGTGAGTAGTGA ATATTTTTCCTCCTTCTTGCATCCATACAAGCTTGTGATGAAATACTTTGCCTTTTGTTCTTTACCCTGGCCTAATGATA TGCATTTGTACATTCTTCACTGATTCTTTTTGTTTCTAGTTTCCCTGTTTTCCCCCCTACATCTATTTTTTTTTTGGTAA AAGTGTATTAAACCCTTACATATTGGATCTTTTGTAAATAGTCACCGAGTCTTTTAATTTTGGCAATTACTAATCCCTTG AAATTTGAAAATGTTTTGATAGCTGCTTTGTTTTTCTTGCTCTTTTCTTAGCCAATAATTCAGTATGAATATGAACTCAA AACTAACTTCTCTTATATTGAAAATTTTCAACACAATACTCATGTTGCTTGCTTATCTCAAAATGTTTATACACATAATC CAAAATTTTAAAAAAATGAGTCATTTCTTTGACTACAAATTAACTCCTATTTATTGATACTTTTTTTAATTTTCTATCAA AGGAGGTTAATTGCGAAATTAACAGTTAATGGGGTCTATTTGCCAAAGCACAAAAGTTATGTGCATTATTCCCTAATATT TTGGTAGGCAGGCAGTGTTGCACCTTTTTGGTGCATAAGTTGTATTCACACTCTCATGCTTGGATTTTAAAATTTGGGAC AAATCTTATCATTCATACTTTTGTGTTATTTCTTGTTGAATAAAATTGAAAATGACCTTTAGCTGTGTCTTTTGGTAGAG TGGTAGACTATTTGTAAGTACTAGCTATACTAAATTAATGATTTTATATACTTACATTTGCGTGAGTCCTTTCATTTTGT TGTTACATTTGGAGGTTCAAGCACTTGGTAGGGAAGGGGAAAGGTGGCTTGGTTGTGGATATCAAAATTCTGATACCAAA TCAAGTCCAATTCTTATTTGGGTTGGTGCAGATTGAGCTACAAGCTCGTTTGCACACAGACCCCTGTTTAATTCAGTGTA ATCATGAGTTTTCCCCTCCCTCCCTCATCCCTGTTTATCATTGTAGATAACAGAAAGACTATAGCTCTAATTCTGAGGAA ATATGCAACATTTAAGGGATTTAATGAATTTAGGTGAGTTCTTGAGATTCTTTAAATGGTTTGAATAAGTGAAGAAGGAT ATTGCAACATCTTCAATAACACAGAACCTGAACTAGTTGCATGTTCAACAAATTTTATGCAATGGTTCAGCCCTACTTTT AATGACTGAAAGCTCTAATTGATTGGGTGGCATGATATGTAGCAATCCCCCCTTCCCCAACTCCCAATACACACACAAGG AAAAAAGATTGGGTGGTATAATGCCAACATCAATAATTTTGTGCATGCTAGTATTTTATCTTTTAGAAATTTGAGATTTA ATTGCAACAGTGTTTCATTTGATAGTTTTTTTTGTGCATTCCAAATCACCAATCTCATTGTTTTTATTTTTACTTGCTTG CAGATATATAATTATGGGGGAACGTTCACTGAAGACTACAACATTGCGAACACACCAGCACCTCCTGGTAACTTGAGAAT ATGGGATATGTTACTTATGCATGTGGTTCATCATATTTGTATTTACCACAGATGTTTCTGATGCATATTTTCACCTTATT TATTAGAAGTACCAGCCAGTACTCCTGCCCTTGTTGCGCAAAATGAGGTTGATGAAGAAGATGATGATGATGATGAGCCC CCACTAAATGAAAATGATGATGATGATTTTGATGATTTAGATCAGGGAGAGGATCAGAATACACAACATCTTGTTCTGGC CCAGTTTGACAAAGTAGCAACCTCTCCATTTTCTGTGAATTACATATTGAGTGTTATCACAATGTGATATAGTAATATAT TTTAATGGCTCATGGTTGGAGAATCATTTCTTGAGACTAATGGATCTCTCACAACACCTTTAGGTGACGCGAACCAAGAG CAGATGGAAGTGCACACTAAAGGATGGTATCATGCACATAAACAATAAGGATATTCTCTTCAACAAGGTTTGTTAGTTGT GAAGGAGAGCAATGATATGTACTTATCCTTTGATTTCAGCTTATCGAATTTTTGCGATGGCTGATACCATGCTCTTCTGC AGGCGAATGGAGAATTTGACTTCTGACTTTGTCGGGGACTGGTCTGCCATTTAGTGGGAGTGCTTTGGTGAAGCATAATT CAGACTTGCCATTGTGTTTCGTAATCTTTCTTTGATTATAATTGTTAATTACTAAGTTAAAGCTTGAGGAAGAGGAAAGT CCTTAATACTTTCTGAGTTTCGACCTTGTTATATTGATGTTGGTGATGTACATAAAGGAAAAGTATGAGCAAATTTTGGC CTTTACCTGGATAGGGCACTCTGAGGCATTTCCTAAAGTTCGCCATTTGTTTACCTGGATAGCTAGAGTTTTATTAGCTC TGTATACTTGGTCAGTTTGTTTTTCATTCGGGACCTTATGATATTTTAGATAGTTTAAATTACCGTGTTCTCCTTATTAG CTTTTGAGCCTTAGTAAAGAACGGCGATAATGATTTCTGAAACTGACAGAAAATAAAAAAAATTAGATTGATATATAAAG ATTGGAGAATTCTACAATGGCAGCGGCTTGTCATTTCTTGCTAGGGCGTTTCTACTGCCTGGTGTTATTTTCTTATTTGT TTTTTGGTAAATGGATTGTGCAAAAGAAAGAAAGAGTAGAATTTTTCGTTCGTTCTTTCTTAAAGCTGCTTTATAATGTA ATGCCCTTTCTAGACCTCATTTGTATGAGTGAATCGCTATAGTTGGAGTGTTTTGGTTTTGTATCTGCAGTATTTTGGTG AAAAGCTACTGATGTACACTATTCTCCTCCGTTAGGTGATTGTGCAACAAATTTTCAAATACATCGTTGTGTTTGAATTT CTATTAAGCTCAATGTCAATTTAAGTTACACGTTTGTGAGTTTGAGATCTTTGAAATCACTCTCGCATTAATGCAAGACA AACAGCCTTTAAGATATACATCTTGTTATACAAATTTGTAAGTGTAATGTTTGGCTTGAATGTAATTGAAACTTAACTAA GCCACTAAAGATATTTGCAATTATTTCACTAAAAACAAATAGTGGGGGGAGAGCAGAAGCTCCCTCCACTTCTTTTTAAA AAAAAAAATTAATTTCTGAACCAACGTGTAGAAAGGAATGTCGCAGTTGTACAGGCTTGGGATTTGGAACTTTCCTCTGC AACTTTCTGTCAATACCTCAGAAGAAAAATCTGATTTTTTTTACTGGGTATTGTTCACAATAACACATTGTTTTTGCAAG AAGCTGCACAAAGATGAAGGCTCTGGAAATGGAGCCATAGCTGGATGTTTCCACCCTGTATTTGGAGTATTGGATTTGGA GGATGAACTCCAACCCTCATTGCCACCACTATTCTGTGCATTTGGATTTTGTTCAACAGTCTCTGCATACAGAATTTGTG GGGATATGACAAGTGGGGATAATAGAGGAATTGCATTTGAAGCCTCTCCAAAAGGGTTAGAGGGTCTCTCACTGAGAACT TTATCAATCTCAAGAGAAGCTGGAGCATGCTTCTGAAGCCTTGTAGGGCACCCTCCTGCTCTGCCTTTTGTTCTTATCAA GCTAGCTTTGTCCTCCATTTTTACAAAAAAGAAAAGCTTCTTTTTATTCTTAGAAAATTGATTGCACTAATTTGCAGGAA GTATGTTTAATGTAATTGGAAAAGGTTCATTCAAATGAGATAACAATTTGAATCAATGATCTTGTTTCATATAGGCATAT CCTAATGTAGTTGCAACTTGAATGGATTTTGAAAGGAATGGTACAGAGGACAAGACAGAGGAGGAGGTAACAAGAATAAC TTTCCATAGGAATCGGAGAAGAGGGTTTCAAATTTTATTGGTTCCTAGGTTTTGTAGGATGACTTGTCTCTAATCCCATT ATTTGCGGAGTCAACGGCTATGGTTTTTTCAGTTTGTTGTTACTATGATTTTGTTCTCAC
CDS sequence (LotjaGi3g1v0490400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTTCCACCACCAGCCAGGTCTACGTTCAGGTCATCGACGACGTCGTCAACAAGGTTCGCGATGAGTTCGTCAA CAACGCCGGTCCCGGCGACGAAGTCCTCAAGGAGCTTCAATCTATTTGGGAATCGAAGATGATTCAAGCTGGTGTGTTTC TTGGTCCAATAGAAAGGTCTGGCACTGTTAAGCCAGTGCAAGGTGGTCCGATTACGCCGGTGCATGATCTTAATGTGCCT TATACTGAGGAGTATGAAACCCCCACTGCTGAAATGCTTTTCCCCCCTACCCCGGCACAAACACCTATTCAAACCCCTTT GCCAGGAACTGTGGATAGCTCTATGTATAACATTCCTACTGGACCTAGTGATTACCCATCTTCTGGGAATGATTCTGGAG CCAATGTGGAGATTAAAGGTGGAAGACCCGGTCTGTACATGCAACCTCCTTCTCCATGGATGAACCCAAGGCCTTCTCTT GATGTCAATGTTGCTTATGTGGAAGGGCGGGACGAGGCAGACAGAGGAAATCCCAATCAACCCCTGACACAGGACTTCTT CACAATGTCCTCAGGGAAGCGAAAACGTGATGAAGTTGCTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATG GAGCTGGAGATGCCAGATCCCGGAATTTTGAAATTGAACTGTATGGAGGGGGCATCTCCATTGGTGCAGGTCACCCTACT TCTAAAGAGAAAATGCCAGCACATTTGGAGAGGCCAGCTTCTCGGATTCCTCAACATGATGGACCAATTCCCTATGATGA TGATGTGCTTTCTACCCCAAATATATATAATTATGGGGGAACGTTCACTGAAGACTACAACATTGCGAACACACCAGCAC CTCCTGAAGTACCAGCCAGTACTCCTGCCCTTGTTGCGCAAAATGAGGTTGATGAAGAAGATGATGATGATGATGAGCCC CCACTAAATGAAAATGATGATGATGATTTTGATGATTTAGATCAGGGAGAGGATCAGAATACACAACATCTTGTTCTGGC CCAGTTTGACAAAGTGACGCGAACCAAGAGCAGATGGAAGTGCACACTAAAGGATGGTATCATGCACATAAACAATAAGG ATATTCTCTTCAACAAGGCGAATGGAGAATTTGACTTCTGA
Protein sequence (LotjaGi3g1v0490400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASTTSQVYVQVIDDVVNKVRDEFVNNAGPGDEVLKELQSIWESKMIQAGVFLGPIERSGTVKPVQGGPITPVHDLNVP YTEEYETPTAEMLFPPTPAQTPIQTPLPGTVDSSMYNIPTGPSDYPSSGNDSGANVEIKGGRPGLYMQPPSPWMNPRPSL DVNVAYVEGRDEADRGNPNQPLTQDFFTMSSGKRKRDEVASQYNAGGYIPQQDGAGDARSRNFEIELYGGGISIGAGHPT SKEKMPAHLERPASRIPQHDGPIPYDDDVLSTPNIYNYGGTFTEDYNIANTPAPPEVPASTPALVAQNEVDEEDDDDDEP PLNENDDDDFDDLDQGEDQNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKANGEFDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 386 | 386 | 2.8E-133 | – | |
| PANTHER | 1 | 386 | 386 | 2.8E-133 | ||
| Gene3D | 1 | 55 | 55 | 2.4E-17 | – | |
| SUPERFAMILY | 5 | 47 | 43 | 4.71E-10 | – | |
| SMART | 8 | 386 | 379 | 4.5E-88 | ||
| Pfam | 9 | 201 | 193 | 9.1E-13 | ||
| Pfam | 182 | 385 | 204 | 1.9E-30 | ||
| MobiDBLite | 309 | 336 | 28 | - | – | |
| MobiDBLite | 309 | 335 | 27 | - | – | |
| Gene3D | 329 | 386 | 58 | 2.7E-25 | ||
| SUPERFAMILY | 330 | 386 | 57 | 8.11E-22 | ||
| CDD | 341 | 386 | 46 | 1.45856E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi3g1v0490400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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