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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0492900 |
| Transcript ID | LotjaGi3g1v0492900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trafficking protein particle complex subunit 4; TAIR: AT5G02280.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4; TrEMBL-Plants: tr|I3SNC8|I3SNC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91107733..91110014) extracted from Lotus japonicus Gifu genome v1.2.
TTATTGCGTAAAGTACTGTATTCTGGTTATAAAATTCCTTGTTAAACTCTATCTTCATCTTTATTTCAGATTCTGGTAAA GGCTTTTGGAATGGCAGCTATTTACAGTCTTTACATCATCAACAAGTCTGGTGGATTGATCTACTATAAGGTTTGGCCAT TCTAAGTTCTTTTTCCTTTGCTCACTGCTGTGGACTATGAATTCTTTTTCTTTATTTTTTTGCGGAAGAAAAATGTTCTA TTCTGTTTCCTGGAAATTTGTATCCGTTATGCACGTGCCTTAGCAAGAAAATAAGGTCTGAAGGTGTGTACAAAAGGAAT AAATAGCAAGGGGTTGGTCGGTTAGCTATAATCAGTTAAACTGGCAGTTAGATAGTTAGGAGTTAAATAGCGGGAATTGT ACAGCTGTAAGGGGCATTTAGGATAATCAGTAGTTAACTAAGTCTCTCAGTTCTAACTTCTAAGGGGCGATTGTAAGGAG GGTTTTGTGCCTTGTTAGCAGAAATAACAGAGTTCTTCCTCTCTTTCTCTCATCTTCGGTCTTTCTCATCCTTTGTATCC TGGACATTACACAGTCCCAAAATTGAAACCTTTTCACCTCACAAGTTACAACATTCAACATTTTCGCCACACGCTGGTTG CTCCTTTAATGTGGTTGTTGCTTGTGGGTCTTTTCTATATTGGTTCCATATTAATTATCCTAACTGTTTCTCTATTTAAT TATATATTGTCTTGTGCTCTTTTCATTACCATATTTCTACTTGAATCCTAGGGCTGATATCTCCCTTTATCTCCCCATCA TTTTGTATGATGAGCCAAAGAAACTTAAAACATGAGACTTGTGGTTGTAGTATTGTATGTTCTTCAGTTTAAATGAGACC TCGATTAAATAGCCTCTCCAAAAACTTGGGTTTTGACAAATCACAATTCTATAATATATACAGGCAACCCTGCTTAATGA GTTGCAGCAATGCTTTTTTCTTTCCCTTTACCAATAGAAAGTTGATATAGAATTATATTAAAACTTTTTGATATTTAGGA TTATGGATCTGCTGGACGAATGGATACCAATGATACGTTACGGGTGGCTAGTTTATGGCATTCCATGCATGCCATCTCTC AGCAGTTATCACCTGTTTCAGGTTGTGCAGGAATTGAGCTACTCCAAGCTGACACATTTGATCTCCATTGCTTCCAATCA CTGACAGGTATTGTTTTAACTAAATTCGTAATTATTATCGTAGCCTTTCAAATTCAAACTGAAGTGTGAATAAAATAAAG AATGAAGGCCAAACATCCTATACATGTTACTGCTTATTTCTAGCAGTACCAACATTTATTTCTTACTCGCATTAGTATGT AGCCTTGCAATTACTGTACTGTGGCGAGATTTTTGAAAAGAAGGTCTAGTGATATGAAATTATAAATATTTCAGTTCTAG ATTTATTCTCTTGCTCATTTAAGACTCTTTGATAATTTACCTGTAGAATCATGTTCGTGATATCTTCCAGGATTTTATAT GCTATGCTAAGTTCCATTGAGGTATAGCTGCTAATAATAATTTGGCATGGTATAAAATATTATTAAAAAAAATTACATCA AGTTTTGCAAGTAGGCTGGGACATAAAATTTAGAATGAAAATTCATCATTAGGTTGAAAGGAGGCTGGACGTAAATGATT TTCTATGTACTATCATTTATCAGATATTAAGCCCTCACTGACCACTGCTAGTTTTTCCCCATGTCCTATTGTTGAATTCC TTATTGAGATTCAAGAAGATTATTGTATTTACAGGCACATGATATGCAATTTTAATAGTCTCTGTAAAGATGGCATATGC TTATTCTAATTTGAATGATGATGAACTTGATAGTTGAAATATTTCTAGATGTTTGGCTGCTCTTGCGTTTAAATTTTAAT TGCATAGTGTGATCCATAAAGCTTTTGTAGTTATTTATTTGTTTGTTTTGATTACTTGTCAACCTAGTGTCTGTTTGGAA ATTCTTCTATAATTGATTCTAAAGTCAAAATCAATGATTTCCTGTCCCTAACCATGCCTTATGAAATAATTGTTCTCTTC CACAGGGACAAAGTTTTTTGTGGTCTCTGAGCCTGGAACTCAACAAATGGAAAGTTTATTGAAATTCGTATATGAATTAT ACACGGATTATGTTTTGAAGAACCCCTTCTATGAGATGGAGATGCCTATTCGTTGTGAGCTCTTCGATATCAACCTAACT CAAGCAGTACAAAAAGATCGTGTTGCATTGTTGGCCCGATGA
CDS sequence (LotjaGi3g1v0492900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTATTTACAGTCTTTACATCATCAACAAGTCTGGTGGATTGATCTACTATAAGGATTATGGATCTGCTGGACG AATGGATACCAATGATACGTTACGGGTGGCTAGTTTATGGCATTCCATGCATGCCATCTCTCAGCAGTTATCACCTGTTT CAGGTTGTGCAGGAATTGAGCTACTCCAAGCTGACACATTTGATCTCCATTGCTTCCAATCACTGACAGGGACAAAGTTT TTTGTGGTCTCTGAGCCTGGAACTCAACAAATGGAAAGTTTATTGAAATTCGTATATGAATTATACACGGATTATGTTTT GAAGAACCCCTTCTATGAGATGGAGATGCCTATTCGTTGTGAGCTCTTCGATATCAACCTAACTCAAGCAGTACAAAAAG ATCGTGTTGCATTGTTGGCCCGATGA
Protein sequence (LotjaGi3g1v0492900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAIYSLYIINKSGGLIYYKDYGSAGRMDTNDTLRVASLWHSMHAISQQLSPVSGCAGIELLQADTFDLHCFQSLTGTKF FVVSEPGTQQMESLLKFVYELYTDYVLKNPFYEMEMPIRCELFDINLTQAVQKDRVALLAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 141 | 141 | 3.4E-98 | – | |
| PANTHER | 1 | 141 | 141 | 3.4E-98 | ||
| SUPERFAMILY | 1 | 133 | 133 | 2.29E-39 | ||
| Gene3D | 2 | 135 | 134 | 7.0E-53 | – | |
| SMART | 4 | 134 | 131 | 4.5E-69 | ||
| Pfam | 4 | 133 | 130 | 4.3E-53 | ||
| CDD | 5 | 130 | 126 | 2.39476E-84 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | TRAPP complex | A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active. |
Expression pattern of LotjaGi3g1v0492900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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