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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0495200 |
| Transcript ID | LotjaGi3g1v0495200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT3G20820.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q00874|DR100_ARATH DNA damage-repair/toleration protein DRT100; TrEMBL-Plants: tr|B7FNF6|B7FNF6_MEDTR LRR receptor-like kinase family protein; Found in the gene: LotjaGi3g1v0495200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91328339..91329899) extracted from Lotus japonicus Gifu genome v1.2.
GTGCCTTTCTGCATTTCCATGTTCCCTCCCTTCATACTCGCAAATTAGTCAACACAGCATCTCATCTCGTTCAATGGGGG TAGTTCGAGTTCCATTCCTGCCACTAACGGCGCTGTTAGTGTTACTCCTCACCGTCACCTCCACCGTCCACTCATGCCCG CCGTCCGATCTGGCTGCCCTTCATGCCTTCAGGTCATCCCTCCGTGAGCCTCATAACGGCGTGCTCAACTCTTGGACTGG CACCGACTGCTGCGCCAACTGGTTCGGCATCGCCTGCGACAAGAACACCCGCCATGTCTCTGAAATCAACCTCCGCGCCG GCTCCGTCGACACCACCTTCGAGCAAGCCCACGAGCCCGCCTACATGGCCGGCCACATCTCCCCGGAGATCTGCAAGCTC ACTCAGCTCTCTAGCCTCACCATCACCGACTGGCAGGGAATCTCCGGCGAGATCCCCGGATGTGTCTCCTCCCTCACCTT CCTCCGCATCATCGATCTCACCGGAAACCGCATCTCCGGCGCGCTCCCCGCCAACATTGGCAAACTCCGGCAGCTCACCC GGCTGAGCATCGCCGACAACCTTATTGCTGGAAATATCCCGCCGTCGCTAACCTACGCCACCAGGCTCACGCATATCGAC CTCCGCAACAATAAGATCTCCGGGCCCATTCCGCAAAGCCTGGGGCGGCTTCGGATGTTGAGCCACGTTGGGCTCAGCGG GAACCAGTTAACCGGGCCCATCCCAAGCTCAATTTCAGAGATTCCCCGTCTCGCGGATTTAGATCTGTCTCAAAACCAGC TATCCGGTCCAATTCCAGAGCCGTTGGGCCGGATGGCAGTTTTATCGACACTAAAATTCGATATGAACAAGCTCTCGGGT ACGATCCCTGCAAGCTTGTTGGTCTCGGAGATTAGTGACTTGAACTTGAGCCATAACATGTTGGAGGGTGAGATACCCAA CGCTTTTGGGGCCAAGACTTATTTCACGTCAATGGATTTTTCCTACAATAATCTCAAGGGTCCTATACCCAAATCCATAT CTTCTTCTTCCTACATTGGGTACTTGGACTTTAGCCACAACCATCTCTGCGGCCCAATTCCCAGTGGAGATTACTTGGAT CATGTTGATGCGTCGTCATTTGCTTCCAACGATTGCCTCTGTGAAAAGCCACTCAAAGTTTGTTAAATTAGTGCCACGTC AGCAAATGACTAAACCCCACCCAGTTTTTTCTTAATCCTCAATGTGTTTTTGTTGTTATGTTAATTTTTTATATTTGTCC TCTTTTTGTTTTCTGTATTTCATTTTTTTATAAATAAAATAGAAGGTTCCTACCATCCTTTATATGCTCATGCACATGCA CTGATGCACATTGTCAGTTTATGATTTAATTTATTTGAATTTTTTCCTATAATCCCGAGCCATTCACTTGCTTCAAAGTT GAAAACTAAAATCAGGATATGGTGATCAAAGGTTTGTCCAGCATGCATCCACCGTATGTTCAGGTGATGTATTGATACGT TAACATGTAATGATTTTATATGAATTTGAAAATATATTAAA
CDS sequence (LotjaGi3g1v0495200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTAGTTCGAGTTCCATTCCTGCCACTAACGGCGCTGTTAGTGTTACTCCTCACCGTCACCTCCACCGTCCACTC ATGCCCGCCGTCCGATCTGGCTGCCCTTCATGCCTTCAGGTCATCCCTCCGTGAGCCTCATAACGGCGTGCTCAACTCTT GGACTGGCACCGACTGCTGCGCCAACTGGTTCGGCATCGCCTGCGACAAGAACACCCGCCATGTCTCTGAAATCAACCTC CGCGCCGGCTCCGTCGACACCACCTTCGAGCAAGCCCACGAGCCCGCCTACATGGCCGGCCACATCTCCCCGGAGATCTG CAAGCTCACTCAGCTCTCTAGCCTCACCATCACCGACTGGCAGGGAATCTCCGGCGAGATCCCCGGATGTGTCTCCTCCC TCACCTTCCTCCGCATCATCGATCTCACCGGAAACCGCATCTCCGGCGCGCTCCCCGCCAACATTGGCAAACTCCGGCAG CTCACCCGGCTGAGCATCGCCGACAACCTTATTGCTGGAAATATCCCGCCGTCGCTAACCTACGCCACCAGGCTCACGCA TATCGACCTCCGCAACAATAAGATCTCCGGGCCCATTCCGCAAAGCCTGGGGCGGCTTCGGATGTTGAGCCACGTTGGGC TCAGCGGGAACCAGTTAACCGGGCCCATCCCAAGCTCAATTTCAGAGATTCCCCGTCTCGCGGATTTAGATCTGTCTCAA AACCAGCTATCCGGTCCAATTCCAGAGCCGTTGGGCCGGATGGCAGTTTTATCGACACTAAAATTCGATATGAACAAGCT CTCGGGTACGATCCCTGCAAGCTTGTTGGTCTCGGAGATTAGTGACTTGAACTTGAGCCATAACATGTTGGAGGGTGAGA TACCCAACGCTTTTGGGGCCAAGACTTATTTCACGTCAATGGATTTTTCCTACAATAATCTCAAGGGTCCTATACCCAAA TCCATATCTTCTTCTTCCTACATTGGGTACTTGGACTTTAGCCACAACCATCTCTGCGGCCCAATTCCCAGTGGAGATTA CTTGGATCATGTTGATGCGTCGTCATTTGCTTCCAACGATTGCCTCTGTGAAAAGCCACTCAAAGTTTGTTAA
Protein sequence (LotjaGi3g1v0495200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVVRVPFLPLTALLVLLLTVTSTVHSCPPSDLAALHAFRSSLREPHNGVLNSWTGTDCCANWFGIACDKNTRHVSEINL RAGSVDTTFEQAHEPAYMAGHISPEICKLTQLSSLTITDWQGISGEIPGCVSSLTFLRIIDLTGNRISGALPANIGKLRQ LTRLSIADNLIAGNIPPSLTYATRLTHIDLRNNKISGPIPQSLGRLRMLSHVGLSGNQLTGPIPSSISEIPRLADLDLSQ NQLSGPIPEPLGRMAVLSTLKFDMNKLSGTIPASLLVSEISDLNLSHNMLEGEIPNAFGAKTYFTSMDFSYNNLKGPIPK SISSSSYIGYLDFSHNHLCGPIPSGDYLDHVDASSFASNDCLCEKPLKVC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| PANTHER | 8 | 370 | 363 | 3.1E-170 | – | |
| PANTHER | 8 | 370 | 363 | 3.1E-170 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Gene3D | 25 | 94 | 70 | 7.0E-9 | ||
| SUPERFAMILY | 27 | 368 | 342 | 9.3E-61 | – | |
| Phobius | 28 | 370 | 343 | - | – | |
| Pfam | 30 | 69 | 40 | 2.9E-10 | ||
| Gene3D | 96 | 370 | 275 | 7.3E-81 | ||
| Pfam | 159 | 219 | 61 | 2.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0495200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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