Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0495500 |
| Transcript ID | LotjaGi3g1v0495500.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91371317..91380179) extracted from Lotus japonicus Gifu genome v1.2.
ACGTGGGACCCAGCTACCATCACCTATCTTGAAGCCTATTGGTCCTTTCAGTATATCACGGATCACGATCCGTGGCTTCC ACTTCGAAACCACTCCATCCGTCGATTACCCCACTCATCGACGGTCATAAAATAACCACAATCCACCAAAATTTCACAAC CCAAAAAAACTTCAAAATTCCCGCTCCCACATTGAAATATTTTCACAAATCTCCACCCTATAAATAATCTCCATCTGTAA CTTCCTCTTCACCACACAAACACATTTCAATTTCAATTTCAATTTCAATTTCAATTTCAATTTCAATTTCAATTTCAATC CCTTTGCAATTTTCACCAGTTACGTTTCCAGATCCAGATGGCTCGTACAAAGCAAACCGCCAGAAAATCCACCGGAGGCA AGGCGCCGAGGAAGCAGCTAGCAACCAAGGCCGCCCGCAAATCTGCCCCTGCCACCGGCGGCGTGAAGAAGCCCCACCGT TTCAGACCTGGAACCGTCGCTCTGAGGGAGATCCGTAAGTACCAGAAGAGCACTGAGCTTCTCATCAGGAAGCTTCCATT CCAGAGGCTGGTCAGAGAGATCGCTCAGGATTTCAAGACCGATCTCCGATTCCAGAGCAGCGCCGTCTCCGCTCTGCAAG AGGCTGCCGAGGCGTACCTGGTTGGGCTTTTTGAGGATACCAACCTCTGTGCGATTCATGCTAAGAGGGTGACCATCATG CCGAAGGATATTCAGCTTGCTCGTAGGATTAGGGGTGAAAGGGCTTAGGGTTTGTTGAAGAAAAATTTGGGGAAACAATG TTGATTAAATTCCTAGGGTTTATCTTCTATTGTAATTTGATCCGAATGCGAAATGTCTTGTTTCATTGCAATTCGTTGTA GATCTTATTTTCCCATCAATTCAAGAACTGTGCAATCAAATGCAACACCGTCTGTTCAAATTGGCAATCACTCATTACAG AAAACATAGAACATTAGAGATCTATTTTGGATTTTTTTTATCAAATTTATTGCTGAATGAAAACATTGATTTAAGATGCT CCATTTACATGAAGAGCTCTAAAACTTAAAATAATTGCAGATGTTGTGTGTTTTAATGAATCACCAAATTGTTGAGTATT TGAAGTGTTTTTCACATTTTGAGAAGGGTGAATATCATGTATTTCTCATCATTTTTTATTGCAATTCTTTCAATGAGTAT AATTGGAATGCAACATTCAGTGAATAATTGTGGTTTTGAATAGATGTGTTTTAATGCTTTGTCTCTTTATGTGTTTTTTT TTGTGAGCTTTGCTAGCTTGGTATTGAAGCATGACAGTCGTCCAAGTCCCTCGGAAGAGGAATATGGTGGCTGATGTAAT GGCTAAAATTATTATTACAGAGAACTAGGCATGGCATCGGGTAGGGTCGGGTGCGGGTTTCACCCTGCCCAAACCCGAAC CCGAAATGACAAACCCGAACCCGAACCCGAACCCAAACAAGTTTCGGGTACACTCCCACACCCACACCCACACCCGATGG GTTTCGGGTTTCCACACCCGAACCCGAAACCCGTTGAGAACATGTACCATTTATTTTTGTAACCAACATGTACAGCTCAA TAAACTACATTTTGGAAAAGAAAAAAAGCTAATAAGTAATTGTTCTCATTTCCCACCCTTGGTTCATAAATAGGCATGCA ACAAAGTTAACAATGACTAATATAGGACCTGGATAATTGGATATGAGGCTATTTATGTAAATTGAGGCATATAATCGGGT TTCGGGTAGGGTTCGGGTGCGGGTTTAACCAAACCCGAACCCGAACCCGAACATAGGTTTTATAATCGGGTAAAACCCGA ACCCGAACCCAAACCCAGTCAACTCGGGTTTCACCCGTCAAACCGGGTCGGGTCGGGTCGGGTACCCGCGGGTTCGGGCC CCACTGCCATGCCTACAGAGAACTGGGATTGGAAGGAATGGAACATCCTGCTGTTGAATGTGGTTCCTTTGCTTTGTCAG GATATAGTTGTTTAGTTTTGTTCTTGTTTATTTTCTTATTGTACCAAAAAAAAAATAGTCTAGGCTTGATGGGCAGGGCC AAATAAAATGACATAAAAACATGAGTTGCATTATCAAAATTAAAGTTTGATGAAGATTTGGTCAAACCTAGTCATCTACT ATTTGACCAAAAAAAAAATCCTAACCATCTACTTTGTGTGAAATTCAATTTTCTATTATTAATTTTATTTTTTATTAATT ATGAACATTTTAAAATACATATGAAAATCAAAAGATAGGAGTGATAACCAAATATTTATTAATTACTTTTTCTGTGTTTT TAATCAGTCAACATAAAACTAAAAAAGAAGTCTATTGAATTAAAATATAAGAATTCTTAATTTCTTAATTTCAGCCTGTA TTGAAAGAGAATGGTTCCTTACATATTATCATTATTGTAATTCGGTTTAATTTCAATTACGAAAATATATAGTTTTTTTT GAATTTAATTAAAATAAGTAGATATCATATCAATATTAAAAAAACAATTTATATTCAAAAAATCAAAATATAAAATTGAA TCCTTATTTTTCGAAAAAATTAACTGTTAAATTGATTTAAAATAAAAGGTGAGAATATAATTTAGAAAAAATCAAAGTAC AATGATTAATGATGGTAAGAATTCATACAAAAATATCACATAATAATAAATATTTATTTGACAATTAAATTTGGGGAAAA TTAACAATTGTTATTCCATTTAAAGATCAAATTATTAATCCACCACTTATTTCTTATTTTGTATCTATTAACTTTTCAAC CTATTGATATTTGATAAAAAGATATTAAACCTGACTTAAAAATATATATTTATTCAAAAAATCAAAATTAAAAATTGAAA AAATATTAACTATTTAATGAAATTAAAATAAAAATTTAAAACATATTTTTCAGAAAGAAATCTTGGAAAATTAATCATCC TTTTTTTTTGATACATCGAAAAATAAAATTAGCCATCCTTTAAACGTAAACAAAAAATAGCTCGTAACAATTAATATTTA ATTTTAAGATTGAATAATTATTGTTTTGAATAAATGCGGAATAATAGGCTTAGGTGTGGCGGTCTATCCCAAAAAGCACG ATAACTCAATTAAGATTTGGTTAGATTAGCACTTGTCAAAAATTGACATTTATCAAAAGTCTCCATAATTAAGTATCCAT ATTGTTTAATAGAGTGCATCCAGTCAAAACTATTCTTATAAAGAATGGAGAAGAGCTTCAGCTCTGCTAGGGTTTCCCTA ACCCAAACAAGCTCGATGGTGGCTGGTGGTGAAGAGGGGCAAGATCCAGCGGCAGGAGACGAAGAGGCGGATGGTGACGA TGAGGCATAGGGAAGCCCGCTCTTGGCTCTAAATGCAGACGACTCTAAATTGAAAAGGGGGAGATTAGAGACTGAGACGA GTGACTCGCCGAACATTACAACGCTATTTGCTAACAACATAGAAGAGGGGGTGGGGTATCATCATCTTCGGGGGCTTTTT TCCCTCTTTGGGAGGGTCTCGCTGGTCTTCGTTCAACGAAATCAGAAGCTTGGAAGGCGATCTCGATTCGGGTTCGTTCG TTTTCTCTTTAAGAAGCATGCGACTCATCTATCTGTGCTCTTGATGGCCTCAAGGTGGGTGAGGCAGCTCTAGCGGTGGC TCAGACCAAGTTCTCGAAAGCTCCCTCTGGTACTCGGGGGCTTCGCACAGTATGTCTTCTCTTGCTTTGGTAGCCGGAGA TTTGGAGAAGGTAATGGGGTTGACCGAGGGTGCTATATTGGAGAAAGGCTTCTTGTTGCCTTTCTTTTCCCTGAAATTTC CCCTTGCTCCTTTTATGATTGGCAGACGTAGCCACTTCTTATTATTTCCTCCTTGTAATGGTGCGTTTGCTTTTTCTGCT GGAGCTTGGAGCGTGTTTCTCTCTTGATGTTTTGTAACCGTTTTCCTTGTTTTCCTCCTTTGCCCAGGTGCTGCTCCTTT TGTTTCTTGGTTTCTGTTACCTGCTTTATTTAGTTTCTTATTTTGTTTCTCTTGTATATTGGTTGGAGTATCCATTTGTA CTCCCATTAATATCATTTGGCTTATCTAAATAAAAAACGAGGAGCCCTCTTCATCCCCTGAAGTCCTCTCCGGAGAGTTC TGCGGCACTTGCCCTTCTTCCTTCTTCAGCGAGTGACTAAGTTGGACAAGTTGTTGTGGATGGAAACTGTGGGATGGAGA AGAACAACTTTTCCTCTGTTTTCACGGATGGGTTAAGCACCCTCGGCGGCGAGCCCTTGTCCGGCGTTCTGTCCCAACCA TCCTCACCTATATTTGCTATGAAACTTCCTAGGCCAAGGGGTAGGTCCAAAAAGGTTGGGGCTAGGGAATGCGAGAAGAA GGGTTTGCCTTCGTCGTGTTCTAGTTCGGTGTCTTTGGTTGCGGGCGACGCAGAGGCATTTGGGAAAGAACAGATGGTTC TTCCACATGAGCTGTCTAATCCTTATGGCATTTTGACTCGGGCAAGGAACGTCGTTCTGATGGGGAAATGCATAAGGATG TGTTTTGATTGCGCAAACGCCATAGCCCATAATGCGATTACAACCTAGATCTTGGCTACAAGACCTTCGTTGTGCTTGCA GATGGAGGATCAGGTTCTTGTAGTTTTTTATGGTTTATTGGTTGGATTGGGGTAGATCGTTTTTATGGTCTTAGTTGGGT TTTGTTGGTTGTTTGGCTTTATCTAGTTGGGCTTGCATAGGCTTTGGGGGCAATTTTTTTGCCGCCTCCCCGGGCGCGGG ATTTTCTCTTGGCGTTTTTTTTTGGCTCTTTCTAGGTTGCTTCTTTTTTGATCATTTGAGGAGGGTGTATATCTTGCATA TTTTCTCATCACTTGATTAATACATATTTCTATTTCTCAAAACAAAGTATTAACATGTTAAAATACATATAAAAATATAT TGGAGTAATTAAAAAATATTTAATAAATAGTTTTCTTTTTGTGAATTTTAAAATCAATCAATAAATATCTTTTATTAATA GATAACATTACGCAACATATGATCACGTAAGTGCATGTTTCATATTATGGAGAAGATCTTCTTGACATTCTTGGCATTTT GAGCGTACCTGAGATGTTCATCTTTGACATATTCCCCATGAAGTTAATTCTTTTACTAGAGTTGATGCGATTCTAATGTA TAGTTTAAGTGATGTTTAATGGATTCTTTACGCTTTGCTAGGGCTTTCTTTACTCTTGCTTTCACCGGAGCTGTTGGACT TCTTCGTCCCTTTAGTGGACGAGTATAGGCTTTTTTAGTGATGTGGAAGGCCAAGAGGATGGGTAATGTTTCCCTCTATT CATTGACAGTGTCTTTGACTCAGTTTCTTACCATCATATTAGGTACATGTTCAACTAGCATGGGAAGTTGTCTAGGGTTT TTATCCATCCGCATTAGTGGTTAGGAAGGAAATTGCGGTTTGGCTTTATTCGTTTCAATTCCAGGATGGTTGTGGGTTTT GCTATTAAGTCACTTGATGAGCTTAGGGTTGAAGGCGGGTCCTTGAGGGTGTCTTGGGCCAAGTTCCCTCAAAGGAGTGG TTCAGGTAGTTCCTCTAGGTTTCCTTCTTTGTAGGATAATTCAAGAAGAAAAGAGCTCCATTTTGAGAAGGTCTAGATAA AATCACCAGAAGGGGAGCGACGAACGCACTGTCGCGGGTGCGTGTCAAAGTATTTATGCTTTGAATGTGGTACAAGGTAT TGAACACCAGGATCGATCTCACGAGGACTTGATGAAGTATTAATTGAGATTAGAGTATAACAAAAGCAAATAAAAATGGG GTTTGGTTGATTATCAAGAAGAAACATATGATTGAAGTATCAGATAAAAGAAAACGTTAGCCCTCAGATTATAACATTCA AGTGCAACAAACCTTCATTGGTTATAAGAGATTAATTCAGCTTTTTGACAAGCCTTTGAGTTGAATTCCAACTTACAATC GTGAGATGAAAATCCTGATTCTCCACTGAACAATCGTTCAGAATATGATTCGTTCAAGTTGAGAAGCTTGGCGATCGCCG CTTCAAAGTACAAGAACTGTCTATGCCCACGGAATCCTCGAAGCTAACAACCGATCTGCATTAGAGATATGTGTTCTTAG AGAACGAATTCACGATCGCTTCATCGTCTCATCACCAGTTAAAGAATCCTCTAACTGACTCAACTTGCTTGGATAATAAC AATTAAAACACAATATTACTTGAATCCAAAATATTATTGAAAGCAAGAATTAAAGAACATAAATCAGCTTGAATAAAAAG ATGAAATATATTAAGAACGAAACCTCAGGTTTGCAAACACAAGAATATTAAAAATCCTAAGACTAGCTAAGGAGTTTAGC AACTCATACTTGAAAAGAGGGAGAGATGAGGTGAGGTCCTAAAAAGAGCCTCTACTAGCCTATTTATAATAATATATAAA CTTGTCAATCAAGTAACAATCCTTGCTATCTAAATCTTTCCAAAATCTTTTATAAATCTTCACAAAATCAGGCCCACAGA GAGGAGTAAAATGCTGAATACTTAGGCATTCACGGGACCCATACGAAGGCTGAAACTTCAATCAAGGTAACATTAAATTT GTAACTCTTTAAGTCAGCTTCACGGGCCTTTAAGCGGATCCTAATTCAGAGTTTTGTAGCCTAAGATATGATCATTTAAA TGCAGACTGTTCCAGACTCGCAAGATTAGCGACAATAACTTTGCAAGGGAATTATAACCGAGTTAGAGGCTGATTCTTGA AATTAGATGAACATGAAAGTTGTAGGGCTTCAAGTTATCTTTCCCACGACATATTACACGCCCATTCGGATCACTATAAC TTCAGATTCACATAAACTAAAAGTGTAGAATTAAGCACATTTCTATGAATAATCCAAATAAGCATTAATGGTCAAAATAT GACTAAGACATAAGAATTAAGCACAAAGATATATAATGAAGCTTAAAAATACACACATAAAGTGCATCAATTATGCGCTT ATCGGGGAGAATCCATTTGCGTGTCTATGGTGAGATGTCCTGCTAGGGGTTCGAAGAGATCGATGTGTTGCCCCCTTCTT GGTGGAATATGATTGTATGATCTCAAATATATCTCATGGTGGTGTTCTGGAACCACGTTTGTCGGTGGAAGCTTTATTCC CTAAGGGCGTTTGGTAGATAGACATCTCAAAATATTCCCGGAAATGTGAGGTTGGGAAAGTAACATTCCCATGTTTGGTA GAAGTTTAAATTTTTTTATTCCCGGGTATGAAAGATTCTAGGTAAGTAAATTACACATGATTTTTTGAATCTCATTCCCA TCTTAAAGAAGGGGAATCTTACATTCCCATGGGAATGAAAGTTATTTTCCACTAACTCTCTATTCCACTACTTATTTTCT ATTTTTATATTTTTTTCTATTAAATGATTTTGAAAAACATTCCCGGGAATAACGTATACTAACCAAACACATTTTTCATT TTACCAGGGAATGACTTTGCTGGTAATGAGATTCCTGGGAAACAACATTCCTGGGCATATTTTTGTAAAACTTGTAACAA ACGCCCTCTAAAGCGTTTTCGTTTTCCTGTTGCGTTTGATGATGAGAGGTTGTTGAGCTCGGAAAATGAAGAAGCGAAAG TGGAGTTGGAGAGCTCTGACCATCTCTCTTCATTAATATGGGTTGATAATGGTGGGAAGCGTTTAAGAGGTTTTAATGAT AATGTCTCTAATGATTCCTTTATTTCAAGGCTTATTTTTAGGGATGGAGCGGTTTTAATGATAGATAATAATGAGATTTT AATTTCTAAATTTTCAATTATGGCACCTCTTGGAACGTGAAGTAATTGGTGGGCCTGGTTTTCTTGTCTTTTCCAGCTCC ACTTTGGTTGCATAAAAAAATAAAAGAGAAAAATGTATCATGTGACAAAAAATGCAGTAAGAGAGGTAAAAAGAAAAAAA AAGTGTAGAAATGAGATGAGAGAGAAAGTGAGGTGTGGGTGACTCATTAGTCTTATCCAAACCTACTGACCTTTAGATTT TAATTACTACATCATCACAATCATGTCATTTAATATAATGATCCGTGGCTTCTGATGAGAGAACATTATGTCCGTTGATT ATCAACTCATCAACGGTTATTTGAGTTCAAAATTTTCACCAAAACGGAAAAAATTACAACACCTGAAATGTTGTACACAA ACCTTCACCTTATAAATACTCCTCATCTGCTATTCACTCTTCACTACCAAGCTTTCGCTTCTAACTTCTGAGTCTTTTGA AGTTTTTGAACGACAAGTTTTCTGACCCAAATGGCTCGTACCAAGCAGACTGCACTGAAATCCACCGGAGGAAAGACGCC GAGGGTGAGCCTGGCGACCGTCGCCGCCCGCAAATCTGCCCCGCCCACCGAAAGAGTGAAGAAGCCCCACCGTTACAGGC CTGGCACTGTTGCTCTGAGGGAGATCCGCAAGTACCAGAAGAGCACTAACCTTCTCATCCCGAAGCTTCCATTCCAGAGG CTGGTCAAGGAGATCGCTCTAAACTTCAAGGCTGATTTCCGCTTCCAGAGCAGCGCCGTCTGGGCTCTTCAAGAGGCCGC AGAGGCGTATTTGACGGGCTTGTTCCAAGACACCAACCTCTGTGCCATTCATGCTAAGAGGGTGACAATCATGCCCAAGG ACATTCAACTAGCCCGCAGGATTAGAGGCGAGAGGCCTTAGGGTTTATTGTAGTAAAACTGAGGGAAACCATGTTGGTTT CCTTGAGTTTATCTTTTATTGTTATTCAATCAAGAATAATTATGCCATCAAATATAAACTTGT
CDS sequence (LotjaGi3g1v0495500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTACCAAGCAGACTGCACTGAAATCCACCGGAGGAAAGACGCCGAGGGTGAGCCTGGCGACCGTCGCCGCCCG CAAATCTGCCCCGCCCACCGAAAGAGTGAAGAAGCCCCACCGTTACAGGCCTGGCACTGTTGCTCTGAGGGAGATCCGCA AGTACCAGAAGAGCACTAACCTTCTCATCCCGAAGCTTCCATTCCAGAGGCTGGTCAAGGAGATCGCTCTAAACTTCAAG GCTGATTTCCGCTTCCAGAGCAGCGCCGTCTGGGCTCTTCAAGAGGCCGCAGAGGCGTATTTGACGGGCTTGTTCCAAGA CACCAACCTCTGTGCCATTCATGCTAAGAGGGTGACAATCATGCCCAAGGACATTCAACTAGCCCGCAGGATTAGAGGCG AGAGGCCTTAG
Protein sequence (LotjaGi3g1v0495500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTALKSTGGKTPRVSLATVAARKSAPPTERVKKPHRYRPGTVALREIRKYQKSTNLLIPKLPFQRLVKEIALNFK ADFRFQSSAVWALQEAAEAYLTGLFQDTNLCAIHAKRVTIMPKDIQLARRIRGERP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 5.7E-89 | – | |
| PANTHER | 1 | 135 | 135 | 5.7E-89 | ||
| Pfam | 1 | 132 | 132 | 6.2E-49 | ||
| Gene3D | 2 | 136 | 135 | 1.4E-71 | ||
| SUPERFAMILY | 2 | 133 | 132 | 1.61E-52 | ||
| PRINTS | 3 | 17 | 15 | 7.7E-74 | ||
| PRINTS | 17 | 31 | 15 | 7.7E-74 | ||
| PRINTS | 34 | 55 | 22 | 7.7E-74 | ||
| SMART | 34 | 136 | 103 | 6.5E-68 | ||
| PRINTS | 58 | 75 | 18 | 7.7E-74 | ||
| ProSitePatterns | 67 | 75 | 9 | - | ||
| PRINTS | 80 | 98 | 19 | 7.7E-74 | ||
| PRINTS | 98 | 114 | 17 | 7.7E-74 | ||
| PRINTS | 114 | 135 | 22 | 7.7E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0495500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…